Mathieu Joron

Publications

Article dans une revue (54)

The genome sequence of the Map, Araschnia levana (Linnaeus, 1758) (Lepidoptera: Nymphalidae) Mathieu Joron,Kay Lucek,Charlotte J Wright,Joana I Meier,Mark L Blaxter Wellcome Open Research, 2025, 10, pp.398. ⟨10.12688/wellcomeopenres.24633.1⟩ Article dans une revue hal-05345630v1
Draft genome and transcriptomic sequence data of three invasive insect species Eric Lombaert,Christophe Klopp,Aurélie Blin,Gwenolah Annonay,Carole Iampietroet al. Peer Community Journal, 2025, 5, pp.e65. ⟨10.24072/pcjournal.568⟩ Article dans une revue hal-05246310v1
The genome sequence of the Alpine Heath, Coenonympha gardetta Hübner, 1819 (Lepidoptera: Nymphalidae) Camille Cornet,Mathieu Joron,Kay Lucek,Charlotte J Wright,Joana I Meieret al. Wellcome Open Research, 2025, 10, pp.403. ⟨10.12688/wellcomeopenres.24645.1⟩ Article dans une revue hal-05345624v1
The genome sequence of the Violet Fritillary, Boloria dia (Linnaeus, 1767) (Lepidoptera: Nymphalidae) Yannick Chittaro,Mathieu Joron,Kay Lucek,Charlotte J Wright,Joana I Meieret al. Wellcome Open Research, 2025, 10, pp.400. ⟨10.12688/wellcomeopenres.24636.1⟩ Article dans une revue hal-05345626v1
Non-random sorting of parental chemical compounds during hybrid speciation Paul Doniol-Valcroze,Lucie Develay Nguyen,Bruno Buatois,Stefan Dötterl,Roman Fuchset al. Journal of Evolutionary Biology, 2025, 38 (5), pp.559-571. ⟨10.1093/jeb/voaf022⟩ Article dans une revue hal-05031513v1
Geographically variable mate preferences shed light on the processes maintaining inversion polymorphism Pierre Lacoste,Mathieu Chouteau,Ludovic Maisonneuve,Rémi Mauxion,Mathieu Joronet al. Evolutionary Journal of the Linnean Society, 2024, 3 (1), pp.kzad007. ⟨10.1093/evolinnean/kzad007⟩ Article dans une revue hal-04762209v1
Montane diversification as a mechanism of speciation in neotropical butterflies Luiza de Moraes Magaldi,Patrícia Eyng Gueratto,Enrique Ortega-Abboud,Thadeu Sobral‐souza,Mathieu Joronet al. Ecology and Evolution, 2024, 14 (7), pp.e11704. ⟨10.1002/ece3.11704⟩ Article dans une revue hal-04792576v1
Strong differences in egg heat tolerance between closely related lowland and alpine butterfly species Paul Doniol-Valcroze,Laurence Després,Mathieu Joron Ecological Entomology, 2024, 49 (4), pp.598-603. ⟨10.1111/een.13323⟩ Article dans une revue hal-04687867v1
Hybrid speciation driven by multilocus introgression of ecological traits Neil Rosser,Fernando Seixas,Lucie Queste,Bruna Cama,Ronald Mori-Pezoet al. Nature, 2024, 628 (8009), pp.811-817. ⟨10.1038/s41586-024-07263-w⟩ Article dans une revue hal-04764304v1
The interplay of local adaptation and gene flow may lead to the formation of supergenes Paul Jay,Thomas G Aubier,Mathieu Joron Molecular Ecology, 2024, 33 (24), pp.e17297. ⟨10.1111/mec.17297⟩ Article dans une revue hal-04792556v1
Exploring polymorphism in a palatable prey: predation risk and frequency dependence in relation to distinct levels of conspicuousness Riccardo Poloni,Marina Dhennin,Johanna Mappes,Mathieu Joron,Ossi Nokelainen Evolution Letters, 2024, 8 (3), pp.406-415. ⟨10.1093/evlett/qrad071⟩ Article dans une revue hal-04792156v1
Chromosome-Level Assembly and Annotation of the Pearly Heath Coenonympha arcania Butterfly Genome Fabrice Legeai,Sandra Romain,Thibaut Capblancq,Paul Doniol-Valcroze,Mathieu Joronet al. Genome Biology and Evolution, 2024, 16 (3), pp.evae055. ⟨10.1093/gbe/evae055⟩ Article dans une revue hal-04530573v1
Subtle Introgression Footprints at the End of the Speciation Continuum in a Clade of &lt;i&gt;Heliconius&lt;/i&gt; Butterflies Quentin Rougemont,Bárbara Huber,Simon H Martin,Annabel Whibley,Catalina Estradaet al. Molecular Biology and Evolution, 2023, 40 (7), pp.msad166. ⟨10.1093/molbev/msad166⟩ Article dans une revue hal-04305745v1
The evolution and ecology of multiple antipredator defences David W Kikuchi,William L Allen,Kevin Arbuckle,Thomas G Aubier,Emmanuelle S Briolatet al. Journal of Evolutionary Biology, 2023, 36 (7), pp.975-991. ⟨10.1111/jeb.14192⟩ Article dans une revue hal-04284804v1
Dominance mechanisms in supergene alleles controlling butterfly wing pattern variation: insights from gene expression in Heliconius numata Héloïse Bastide,Suzanne Saenko,Mathieu Chouteau,Mathieu Joron,Violaine Llaurens Heredity, 2023, 130 (2), pp.92-98. ⟨10.1038/s41437-022-00583-5⟩ Article dans une revue hal-04270914v1
The Impact of Chromosomal Rearrangements in Speciation: From Micro- to Macroevolution Kay Lucek,Mabel D Giménez,Mathieu Joron,Marina Rafajlović,Jeremy B Searleet al. Cold Spring Harbor Perspectives in Biology, 2023, 15 (11), pp.a041447. ⟨10.1101/cshperspect.a041447⟩ Article dans une revue (article de synthèse) hal-04305758v1
Balancing selection at a wing pattern locus is associated with major shifts in genome-wide patterns of diversity and gene flow María Ángeles Rodríguez de Cara,Paul Jay,Quentin Rougemont,Mathieu Chouteau,Annabel Whibleyet al. Peer Community Journal, 2023, 3, pp.e65. ⟨10.24072/pcjournal.298⟩ Article dans une revue hal-04305786v2
The double game of chromosomal inversions in a neotropical butterfly Paul Jay,Mathieu Joron Comptes Rendus. Biologies, 2022, 345 (1), pp.57-73. ⟨10.5802/crbiol.73⟩ Article dans une revue hal-03784594v1
Association mapping of colour variation in a butterfly provides evidence that a supergene locks together a cluster of adaptive loci Paul Jay,Manon Leroy,Yann Le Poul,Annabel Whibley,Mónica Ariaset al. Philosophical Transactions of the Royal Society B: Biological Sciences, 2022, 377 (1856), pp.20210193. ⟨10.1098/rstb.2021.0193⟩ Article dans une revue hal-03784618v1
When Do Opposites Attract? A Model Uncovering the Evolution of Disassortative Mating Ludovic Maisonneuve,Thomas Beneteau,Mathieu Joron,Charline Smadi,Violaine Llaurens The American Naturalist, 2021, pp.000-000. ⟨10.1086/716509⟩ Article dans une revue hal-03375720v2
Publisher Correction: Mutation load at a mimicry supergene sheds new light on the evolution of inversion polymorphisms Paul Jay,Mathieu Chouteau,Annabel Whibley,Héloïse Bastide,Hugues Parrinelloet al. Nature Genetics, 2021, 53 (5), pp.763-763. ⟨10.1038/s41588-021-00810-5⟩ Article dans une revue hal-04909509v1
Evolution and genetic architecture of disassortative mating at a locus under heterozygote advantage Ludovic Maisonneuve,Mathieu Chouteau,Mathieu Joron,Violaine Llaurens Evolution - International Journal of Organic Evolution, 2021, 75 (1), pp.149-165. ⟨10.1111/evo.14129⟩ Article dans une revue hal-03375711v2
Inversion breakpoints and the evolution of supergenes Romain Villoutreix,Diego Ayala,Mathieu Joron,Zachariah Gompert,Jeffrey L Federet al. Molecular Ecology, 2021, 30 (12), pp.2738-2755. ⟨10.1111/mec.15907⟩ Article dans une revue hal-03424522v1
Mutation accumulation in chromosomal inversions maintains wing pattern polymorphism in a butterfly Paul Jay,Mathieu Chouteau,Annabel Whibley,Héloïse Bastide,Violaine Llaurenset al. Nature Genetics, 2021, 53 (3), pp.288-293. ⟨10.1101/736504⟩ Article dans une revue hal-03425009v2
Rampant Genome-Wide Admixture across the Heliconius Radiation Krzysztof M Kozak,Mathieu Joron,W Owen Mcmillan,Chris D Jiggins Genome Biology and Evolution, 2021, 13 (7), pp.evab099. ⟨10.1093/gbe/evab099⟩ Article dans une revue hal-03451709v1
Mutation load at a mimicry supergene sheds new light on the evolution of inversion polymorphisms Paul Jay,Mathieu Chouteau,Annabel Whibley,Héloïse Bastide,Hugues Parrinelloet al. Nature Genetics, 2021, 53 (3), pp.288-293. ⟨10.1038/s41588-020-00771-1⟩ Article dans une revue hal-03375708v1
How do predators generalize warning signals in simple and complex prey communities? Insights from a videogame Mónica Arias,John Davey,Simon Martin,Chris Jiggins,Nicola Nadeauet al. Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1921), pp.20200014. ⟨10.1098/rspb.2020.0014⟩ Article dans une revue hal-02921950v2
Hybridization and transgressive exploration of colour pattern and wing morphology in Heliconius butterflies Claire Mérot,Vincent Debat,Yann Le Poul,Richard Merrill,Russell Naisbitet al. Journal of Evolutionary Biology, 2020, 33 (7), pp.942-956. ⟨10.1111/jeb.13626⟩ Article dans une revue hal-02975525v1
Selective sweeps on novel and introgressed variation shape mimicry loci in a butterfly adaptive radiation Markus Moest,Steven M van Belleghem,Jennifer James,Camilo Salazar,Simon Martinet al. PLoS Biology, 2020, 18 (2), pp.e3000597. ⟨10.1371/journal.pbio.3000597⟩ Article dans une revue hal-03098446v1
Studying genetic antagonisms as drivers of genome evolution Mathieu Joron,Rylan Shearn,Alison E Wright,Sylvain Mousset,Corinne Régiset al. Peer Community In Evolutionary Biology, 2020, ⟨10.24072/pci.evolbiol.100108⟩ Article dans une revue hal-03424539v1
Unravelling the genes forming the wing pattern supergene in the polymorphic butterfly Heliconius numata Suzanne V Saenko,Mathieu Chouteau,Florence Piron-Prunier,Corinne Blugeon,Mathieu Joronet al. EvoDevo, 2019, 10 (1), pp.16. ⟨10.1186/s13227-019-0129-2⟩ Article dans une revue hal-02272908v1
Similar predator aversion for natural prey with diverse toxicity levels Mathieu Chouteau,Jules Dezeure,Thomas N. Sherratt,Violaine Llaurens,Mathieu Joron Animal Behaviour, 2019, 153, pp.49-59. ⟨10.1016/j.anbehav.2019.04.017⟩ Article dans une revue hal-02148400v1
Cryptic speciation associated with geographic and ecological divergence in two Amazonian Heliconius butterflies Neil Rosser,André V. L. Freitas,Blanca Huertas,Mathieu Joron,Gerardo Lamaset al. Zoological Journal of the Linnean Society, 2019, 186 (1), pp.233-249. ⟨10.1093/zoolinnean/zly046⟩ Article dans une revue hal-02324495v1
Coevolution of male and female mate choice can destabilize reproductive isolation Thomas G Aubier,Hanna Kokko,Mathieu Joron Nature Communications, 2019, 10 (1), pp.5122. ⟨10.1038/s41467-019-12860-9⟩ Article dans une revue hal-02363724v1
Genomic architecture and introgression shape a butterfly radiation Nathaniel B Edelman,Paul B Frandsen,Michael Miyagi,Bernardo Clavijo,John Daveyet al. Science, 2019, 366 (6465), pp.594-599. ⟨10.1126/science.aaw2090⟩ Article dans une revue hal-02395414v1
Supergene Evolution Triggered by the Introgression of a Chromosomal Inversion Paul Jay,Annabel Whibley,Lise Frézal,María Ángeles Rodríguez de Cara,Reuben W Nowellet al. Current Biology, 2018, 28 (11), pp.1839-1845.e3. ⟨10.1016/j.cub.2018.04.072⟩ Article dans une revue hal-02324488v1
Polymorphism at a mimicry supergene maintained by opposing frequency-dependent selection pressures Mathieu Chouteau,Violaine Llaurens,Florence Piron-Prunier,Mathieu Joron Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (31), pp.8325-8329. ⟨10.1073/pnas.1702482114⟩ Article dans une revue hal-02324532v1
North Andean origin and diversification of the largest ithomiine butterfly genus Donna Lisa De-Silva,Luísa L. Mota,Nicolas Chazot,Ricardo Mallarino,Karina L. Silva-Brandãoet al. Scientific Reports, 2017, 7, pp.45966. ⟨10.1038/srep45966⟩ Article dans une revue hal-01516776v1
Mimicry among Unequally Defended Prey Should Be Mutualistic When Predators Sample Optimally Thomas G Aubier,Mathieu Joron,Thomas N Sherratt The American Naturalist, 2017, 189 (3), pp.267-282. ⟨10.1086/690121⟩ Article dans une revue hal-02324543v1
Genetic architecture and balancing selection: the life and death of differentiated variants Violaine Llaurens,Annabel Whibley,Mathieu Joron Molecular Ecology, 2017, 26 (9), pp.2430-2448. ⟨10.1111/mec.14051⟩ Article dans une revue hal-02324541v1
What shapes the continuum of reproductive isolation? Lessons from Heliconius butterflies Claire Mérot,Camilo Salazar,Richard M Merrill,Chris D Jiggins,Mathieu Joron Proceedings of the Royal Society B: Biological Sciences, 2017, 284 (1856), pp.20170335. ⟨10.1098/rspb.2017.0335⟩ Article dans une revue hal-02324528v1
Major improvements to the Heliconius melpomene genome assembly used to confirm 10 chromosome fusion events in 6 million years of butterfly evolution John W Davey,Mathieu Chouteau,Sarah L Barker,Luana Maroja,Simon W Baxteret al. G3, 2016, ⟨10.1534/g3.115.023655⟩ Article dans une revue hal-02401864v1
Selection of Valid Reference Genes for Reverse Transcription Quantitative PCR Analysis in Heliconius numata (Lepidoptera: Nymphalidae) Florence Prunier,Mathieu Chouteau,Annabel Whibley,Mathieu Joron,Violaine Llaurens Journal of Insect Science, 2016, ⟨10.1093/jisesa/iew034⟩ Article dans une revue hal-02401822v1
Refining mimicry: phenotypic variation tracking the local optimum Claire Mérot,Yann Le Poul,Marc Thery,Mathieu Joron Journal of Animal Ecology, 2016, ⟨10.1111/1365-2656.12521⟩ Article dans une revue hal-01315117v1
Into the Andes: multiple independent colonizations drive montane diversity in the Neotropical clearwing butterflies Godyridina Nicolas Chazot,Keith R Willmott,Fabien Condamine,Donna Lisa De-Silva,André Freitaset al. Molecular Ecology, 2016, 25 (22), pp.5765-5784. ⟨10.1111/mec.13773⟩ Article dans une revue hal-02401804v1
The gene cortex controls mimicry and crypsis in butterflies and moths Nicola J Nadeau,Carolina Pardo-Diaz,Annabel Whibley,Megan A Supple,Suzanne V Saenkoet al. Nature, 2016, ⟨10.1038/nature17961⟩ Article dans une revue hal-02401812v1
Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling Richard W R Wallbank,Simon Baxter,Carolina Pardo-Diaz,Joseph J Hanly,Simon Martinet al. PLoS Biology, 2016, 14 (1), pp.e1002353. ⟨10.1371/journal.pbio.1002353⟩ Article dans une revue hal-02401881v1
Warning signals are under positive frequency- dependent selection in nature Mathieu Chouteau,Mónica Arias,Mathieu Joron Proceedings of the National Academy of Sciences of the United States of America, 2016, ⟨10.1073/pnas.1519216113⟩ Article dans une revue hal-02401851v1
Beyond magic traits: multimodal mating cues in &lt;em&gt;Heliconius&lt;/em&gt; butterflies Claire Mérot,Brigitte B. Frerot,Ene E. Leppik,Mathieu Joron Evolution - International Journal of Organic Evolution, 2015, 69 (11), pp.2891-2904. ⟨10.1111/evo.12789⟩ Article dans une revue istex hal-02641411v1
Conservatism and novelty in the genetic architecture of adaptation in Heliconius butterflies. B. Huber,A. Whibley,Y. Le Poul,Nicolas Navarro,A. Martinet al. Heredity, 2015, 114 (5), pp.515-524. ⟨10.1038/hdy.2015.22⟩ Article dans une revue hal-01145612v1
Molecular mechanisms of dominance evolution in Müllerian mimicry Violaine Llaurens,Mathieu Joron,Sylvain Billiard Evolution - International Journal of Organic Evolution, 2015, 69, pp.3097-3108. ⟨10.1111/evo.12810⟩ Article dans une revue istex hal-01239558v1
The effect of dominance on polymorphism in Müllerian mimic species Violaine Llaurens,Sylvain Billiard,Mathieu Joron Journal of Theoretical Biology, 2013, 337, pp.101-110. ⟨10.1016/j.jtbi.2013.08.006⟩ Article dans une revue istex hal-01111215v1
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species Kanchon K. Dasmahapatra,James R. Walters,Adriana D. Briscoe,John W. Davey,Annabel Whibleyet al. Nature, 2012, 487 (7405), pp.94 - 98. ⟨10.1038/nature11041⟩ Article dans une revue hal-02652733v1
Variable Selection and the Coexistence of Multiple mimetic forms of the Butterfly Heliconius numata Mathieu Joron,Ian R Wynne,Gerardo Lamas,James Mallet Evolutionary Ecology, 1999, 13 (7-8), pp.721-754. ⟨10.1023/A:1010875213123⟩ Article dans une revue istex halsde-00342850v1

Poster de conférence (2)

MTG-Link: filling gaps in draft genome assemblies with linked read data Anne Guichard,Fabrice Legeai,Arthur Le Bars,Paul Jay,Mathieu Joronet al. Biodiversity Genomics 2020, Oct 2020, Online, France. Poster de conférence hal-03074227v1
MTG-Link: filling gaps in draft genome assemblies with linked read data Anne Guichard,Fabrice Legeai,Arthur Le Bars,Paul Jay,Mathieu Joronet al. JOBIM 2020 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jun 2020, Montpellier, France. Poster de conférence hal-03073966v1

Chapitre d'ouvrage (4)

Structural Variants and Speciation: Multiple Processes at Play Emma L Berdan,Thomas G Aubier,Salvatore Cozzolino,Rui Faria,Jeffrey L Federet al. CL Peichel; R Safran; Å Brännström; D Bolnick & U Dieckmann. Perspectives on Speciation, 17 (4), Cold Spring Harbor Perspectives in Biology, pp.a041446, 2025, ⟨10.1101/cshperspect.a041446⟩ Chapitre d'ouvrage hal-04335155v1
Se ressembler pour se protéger: le mimétisme Mathieu Joron Denis Faure; Dominique Joly; Sylvie Salamitou. 101 secrets du vivant, l’ADN des écosystèmes, CNRS Editions, 2019, 101 secrets du vivant, l’ADN des écosystèmes Chapitre d'ouvrage hal-02401964v1
L’évolution des espèces décryptée par la lecture des chromosomes Dominique Joly,Mathieu Joron Denis Faure; Dominique Joly; Sylvie Salamitou. 101 secrets du vivant, l’ADN des écosystèmes, CNRS Edition, pp.114-116, 2019 Chapitre d'ouvrage hal-02401980v1
Article 30 L’évolution des espèces décryptée par la lecture des chromosomes. Dominique D. Joly,Mathieu Joron 101 secrets de l’ADN. CNRS Éditions, Paris, pp 114-116, pp.114-116, 2019 Chapitre d'ouvrage hal-02370995v1

Pré-publication, Document de travail (7)

Perceptual maps reveal rampant convergence in butterfly wing patterns across the Neotropics Maël Doré,Eddie Pérochon,Thomas G Aubier,Yann Le Poul,Mathieu Joronet al. 2025 Pré-publication, Document de travail hal-05352939v1
Untangling the contribution of adaptive versus non-adaptive processes in the evolution of reproductive isolation between Coenonympha butterflies Thibaut Capblancq,Camille Roux,Frédéric Boyer,Fabrice Legeai,Mathieu Joronet al. 2024 Pré-publication, Document de travail (preprint/prepublication) hal-04850079v1
Positive and negative frequency-dependent selection acting on polymorphism in a palatable moth Riccardo Poloni,Marina Dhennin,Johanna Mappes,Mathieu Joron,Ossi Nokelainen 2023 Pré-publication, Document de travail hal-04310865v1
Admixture can readily lead to the formation of supergenes Paul Jay,Thomas G Aubier,Mathieu Joron 2022 Pré-publication, Document de travail hal-03784689v1
Costs of choosiness can promote reproductive isolation in parapatry Thomas G Aubier,Mathieu Joron 2022 Pré-publication, Document de travail hal-03784676v1
Supergene formation is associated with a major shift in genome-wide patterns of diversity in a butterfly Maria Ángeles R de Cara,Paul Jay,Mathieu Chouteau,Annabel Whibley,Barbara Huberet al. 2021 Pré-publication, Document de travail hal-03454143v1
Genome-wide admixture is common across the Heliconius radiation Krzysztof Kozak,W. Owen Mcmillan,Mathieu Joron,Christopher Jiggins 2021 Pré-publication, Document de travail hal-03101066v1