Matthias BENOIT Chargé de Recherche à INRAE

Identifiants chercheurs

IdHAL :

matthias-benoit

ORCID :

0000-0002-3958-3173

IdRef :

184398665

Présentation

My research program aims at understanding the genetic and epigenetic mechanisms involved in plant-microbe symbioses. Using development, genetics, genomics, epigenomics, and gene editing approaches, I explore the contribution of structural and epigenetic variation to nodule development in legumes, focusing on providing innovative methods and tools for improving nitrogen-fixing symbioses.

Publications

Article dans une revue (24)

Solanum pan-genetics reveals paralogues as contingencies in crop engineering Matthias Benoit,Katharine Jenike,James Satterlee,Srividya Ramakrishnan,Iacopo Gentileet al. Nature, 2025, ⟨10.1038/s41586-025-08619-6⟩ Article dans une revue hal-04998577v1
Epigenetic control during root development and symbiosis María Eugenia Zanetti,Flavio Blanco,Milagros Ferrari,Federico Ariel,Matthias Benoitet al. Plant Physiology, 2024, 196, pp.697-710. ⟨10.1093/plphys/kiae333⟩ Article dans une revue hal-04646016v1
Convergent evolution of plant prickles by repeated gene co-option over deep time James Satterlee,David Alonso,Pietro Gramazio,Katharine Jenike,Jia Heet al. Science, 2024, 385 (6708), pp.eado1663. ⟨10.1126/science.ado1663⟩ Article dans une revue hal-04818802v1
Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome Jia He,Michael Alonge,Srividya Ramakrishnan,Matthias Benoit,Sebastian Soyket al. The Plant cell, 2023, 35, pp.351-368. ⟨10.1093/plcell/koac305⟩ Article dans une revue hal-03853646v1
Four to the floor: Active DNA demethylation defines somatic epigenetic patterns and impacts quantitative traits Matthias Benoit The Plant cell, 2022, 34 (4), pp.1149 - 1150. ⟨10.1093/plcell/koac003⟩ Article dans une revue hal-04171747v1
Hot ‘n cold: Applying the cis-regulatory code to predict heat and cold stress response in maize Matthias Benoit The Plant cell, 2021, 34 (1), pp.497 - 498. ⟨10.1093/plcell/koab269⟩ Article dans une revue hal-04171746v1
From non-self to self: stepwise mutations in transcription factors promote the transition to self-pollination in tomato Matthias Benoit The Plant cell, 2021, 33 (10), pp.3183 - 3184. ⟨10.1093/plcell/koab200⟩ Article dans une revue hal-04171741v1
The right dose: molecular compensation maintains rRNA homeostasis upon reduction of ribosomal gene dosage in Arabidopsis Matthias Benoit The Plant cell, 2021, 33 (4), pp.1089-1090. ⟨10.1093/plcell/koab019⟩ Article dans une revue hal-04171740v1
Dissecting cis-regulatory control of quantitative trait variation in a plant stem cell circuit Xingang Wang,Lyndsey Aguirre,Daniel Rodríguez-Leal,Anat Hendelman,Matthias Benoitet al. Nature Plants, 2021, 7 (4), pp.419 - 427. ⟨10.1038/s41477-021-00898-x⟩ Article dans une revue hal-04171669v1
Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato Michael Alonge,Xingang Wang,Matthias Benoit,Sebastian Soyk,Lara Pereiraet al. Cell, 2020, 182 (1), pp.145-161.e23. ⟨10.1016/j.cell.2020.05.021⟩ Article dans une revue hal-02927024v1
In the Transcripts: Long-Read Transcriptomics Enables a Novel Type of Transposable Element Annotation in Plants Matthias Benoit The Plant cell, 2020, 32 (9), pp.2661 - 2662. ⟨10.1105/tpc.20.00523⟩ Article dans une revue hal-04171728v1
On the Importance of Variation: A High-Resolution Map of Copy Number Variants in Arabidopsis Matthias Benoit The Plant cell, 2020, 32 (6), pp.1771 - 1772. ⟨10.1105/tpc.20.00257⟩ Article dans une revue hal-04171705v1
Glyphosate Resistance Decoded: The Reference Sequence of the Extrachromosomal DNA Replicon in Amaranth Matthias Benoit The Plant cell, 2020, 32 (7), pp.2059 - 2060. ⟨10.1105/tpc.20.00339⟩ Article dans une revue hal-04171708v1
The Great Escape: How a Plant DNA Virus Hijacks an Imprinted Host Gene to Avoid Silencing Matthias Benoit The Plant cell, 2020, 32 (10), pp.3051 - 3052. ⟨10.1105/tpc.20.00631⟩ Article dans une revue hal-04171732v1
Shooting for the STARRs: A Modified STARR-seq Assay for Rapid Identification and Evaluation of Plant Regulatory Sequences in Tobacco Leaves Matthias Benoit The Plant cell, 2020, 32 (7), pp.2057 - 2058. ⟨10.1105/tpc.20.00392⟩ Article dans une revue hal-04171724v1
New Horizons for Dissecting Epistasis in Crop Quantitative Trait Variation Sebastian Soyk,Matthias Benoit,Zachary B Lippman Annual Review of Genetics, 2020, 54 (1), pp.287-307. ⟨10.1146/annurev-genet-050720-⟩ Article dans une revue hal-04171651v1
Slice and Dice: DCL2 Mediates the Production of 22-Nucleotide siRNAs that Influence Trait Variation in Soybean Matthias Benoit The Plant cell, 2020, 32 (12), pp.3646 - 3647. ⟨10.1105/tpc.20.00884⟩ Article dans une revue hal-04171735v1
Sensitive detection of pre-integration intermediates of LTR retrotransposons in crop plants Jungnam Cho,Matthias Benoit,Marco Catoni,Hajk-Georg Drost,Anna Brestovitskyet al. Nature Plants, 2019, 5 (1), pp.26-33. ⟨10.1038/s41477-018-0320-9⟩ Article dans une revue hal-04171191v1
Environmental and epigenetic regulation of Rider retrotransposons in tomato Matthias Benoit,Hajk-Georg Drost,Marco Catoni,Quentin Gouil,Sara Lopez-Gomollonet al. PLoS Genetics, 2019, 15 (9), pp.e1008370. ⟨10.1371/journal.pgen.1008370⟩ Article dans une revue hal-04171612v1
Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development Matthias Benoit,Lauriane Simon,Sophie Desset,Céline Duc,Sylviane Cotterellet al. New Phytologist, 2018, ⟨10.1111/nph.15248⟩ Article dans une revue hal-01919943v1
Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development Matthias Benoit,Lauriane Simon,Sophie Desset,Céline Duc,Sylviane Cotterellet al. New Phytologist, 2018, 221 (1), pp.385 - 398. ⟨10.1111/nph.15248⟩ Article dans une revue hal-04170933v1
The LINC complex contributes to heterochromatin organisation and transcriptional gene silencing in plants Axel Poulet,Ceíine Duc,Maxime Voisin,Sophie Desset,Sylvie Tutoiset al. Journal of Cell Science, 2017, 130 (3), pp.590-601. ⟨10.1242/jcs.194712⟩ Article dans une revue inserm-01629338v1
Arabidopsis ATRX Modulates H3.3 Occupancy and Fine-Tunes Gene Expression Céline Duc,Matthias Benoit,Gwénaëlle Détourné,Lauriane Simon,Axel Pouletet al. The Plant cell, 2017, 29 (7), pp.1773 - 1793. ⟨10.1105/tpc.16.00877⟩ Article dans une revue hal-01919975v1
The histone chaperone complex HIR maintains nucleosome occupancy and counterbalances impaired histone deposition in CAF-1 complex mutants Céline Duc,Matthias Benoit,Samuel Le Goff,Lauriane Simon,Axel Pouletet al. The Plant Journal, 2015, 81 (5), pp.707 - 722. ⟨10.1111/tpj.12758⟩ Article dans une revue hal-01919996v1

Communication dans un congrès (6)

Impact of structural and epigenetic variation on quantitative traits during tomato improvement Matthias Benoit Fous de la tomate, May 2023, Sophia Antipolis, France Communication dans un congrès hal-05162548v1
Epigenetic mechanisms regulate transcription of symbiotic islands during nodule development Arnaud Biasotto-Carrere,Agnès Lepage,Andreas Niebel,Matthias Benoit European Nitrogen Fixation Conference, Aug 2023, Naples, Italy Communication dans un congrès hal-05162520v1
Impact of structural and epigenetic variation on quantitative traits during tomato domestication Matthias Benoit,Jason Gardiner,Colette Picard,Xingang Wang,Michael Alongeet al. LXV Annual Congress of the Italian Society of Agricultural Genetics (SIGA), Sep 2022, Piacenza, Italy Communication dans un congrès hal-05162594v1
Contribution of Transposable Elements to Structural Variation and Phenotypic Adaptation in Tomato Matthias Benoit,Michael Alonge,Xingang Wang,Florian Maumus,Hajk-Georg Drostet al. Epigenetic Mechanisms of Crop Adaptation to Climate Change (EPI-CATCH), COST EPI-CATCH, Jul 2021, Virtual conference, United States Communication dans un congrès hal-05163380v1
Contribution of Transposons to Structural Variation and Phenotypic Diversity in Tomato Matthias Benoit,Michael Alonge,Xingang Wang,Florian Maumus,Hajk-Georg Drostet al. EPIPLANT 2021, EPIPLANT GDR, Feb 2021, Virtual conference, France Communication dans un congrès hal-05163401v1
Contribution of Transposons to Structural Variation and Phenotypic Diversity in Tomato Matthias Benoit,Michael Alonge,Xingang Wang,Florian Maumus,Hajk-Georg Drostet al. SOL International Meeting, Nov 2020, Virtual conference, United States Communication dans un congrès hal-05163426v1

Chapitre d'ouvrage (1)

A Predictive Approach to Infer the Activity and Natural Variation of Retrotransposon Families in Plants Matthias Benoit,Hajk-Georg Drost Plant Transposable Elements, 2250, Springer US, pp.1-14, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1134-0_1⟩ Chapitre d'ouvrage hal-04171678v1

Pré-publication, Document de travail (1)

Solanum pan-genomics and pan-genetics reveal paralogs as contingencies in crop engineering Matthias Benoit,Katharine Jenike,James Satterlee,Srividya Ramakrishnan,Iacopo Gentileet al. 2024 Pré-publication, Document de travail hal-04846989v1

Thèse (2)

Histone H3 variants and chaperones in Arabidopsis thaliana heterochromatin dynamics Matthias Benoit Agricultural sciences. Université Blaise Pascal - Clermont-Ferrand II, 2014. English. ⟨NNT : 2014CLF22497⟩ Thèse tel-01252520v1
Histone H3 variants and chaperones in Arabidopsis thaliana heterochromatin dynamics Matthias Benoit Life Sciences [q-bio]. Université Blaise Pascal (Clermont Ferrand 2) (UBP), 2014. English. ⟨NNT : 2014CLF22497⟩ Thèse tel-04170909v1