Maud Fagny Chargée de Recherche INRAE - GQE Le Moulon - IDEEV - Gif-sur-Yvette, France

Identifiants chercheurs

IdHAL :

maud-fagny

ORCID :

0000-0002-7740-2521

IdRef :

189710691

VIAF :

277145003315361300916

ResearcherID :

http://www.researcherid.com/rid/O-5415-2017

Présentation

Publications

Article dans une revue (25)

The Importance of Regulatory Network Structure for Complex Trait Heritability and Evolution Katherine L Stone,John Platig,John Quackenbush,Maud Fagny Molecular Biology and Evolution, 2025, 42 (8), pp.msaf174. ⟨10.1093/molbev/msaf174⟩ Article dans une revue hal-05314722v1
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks Marouen Ben Guebila,Deborah Weighill,Camila Lopes-Ramos,Rebekka Burkholz,Romana Popet al. Nature Methods, 2022, 19 (5), pp.511-513. ⟨10.1038/s41592-022-01479-2⟩ Article dans une revue hal-03694550v1
Connectivity in eQTL networks dictates reproducibility and genomic properties Sheila Gaynor,Maud Fagny,Xihong Lin,John Platig,John Quackenbush Cell Reports Methods, 2022, 2 (5), pp.100218. ⟨10.1016/j.crmeth.2022.100218⟩ Article dans une revue hal-03694556v1
Editorial: Applications and Methods in Genomic Networks Maud Fagny,Kimberly Glass,Marieke Kuijjer Frontiers in Genetics, 2022, 13, pp.936015. ⟨10.3389/fgene.2022.936015⟩ Article dans une revue hal-03694544v1
Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks Maud Fagny,Marieke Lydia Kuijjer,Maike Stam,Johann J. Joets,Olivier Turcet al. Frontiers in Genetics, 2021, 11, ⟨10.3389/fgene.2020.606285⟩ Article dans une revue hal-03152056v1
Polygenic Adaptation: Integrating Population Genetics and Gene Regulatory Networks Maud Fagny,Frederic Austerlitz Trends in Genetics, 2021, 37 (7), pp.631-638. ⟨10.1016/j.tig.2021.03.005⟩ Article dans une revue hal-03100982v1
PUMA: PANDA Using MicroRNA Associations Marieke Kuijjer,Maud Fagny,Alessandro Marin,John Quackenbush,Kimberly Glass Bioinformatics, 2020, 36 (18), pp.4765-4773. ⟨10.1093/bioinformatics/btaa571⟩ Article dans une revue hal-03642316v1
Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues Camila Lopes-Ramos,Cho-Yi Chen,Marieke Kuijjer,Joseph Paulson,Abhijeet Sonawaneet al. Cell Reports, 2020, 31 (12), pp.107795. ⟨10.1016/j.celrep.2020.107795⟩ Article dans une revue hal-03642288v1
Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function Maud Fagny,John Platig,Marieke Lydia Kuijjer,Xihong Lin,John Quackenbush British Journal of Cancer, 2020, 122 (4), pp.569-577. ⟨10.1038/s41416-019-0614-3⟩ Article dans une revue hal-02964020v1
Differential DNA methylation in experienced meditators after an intensive day of mindfulness-based practice: implications for immune-related pathways R. Chaix,M. Fagny,M. Cosin-Tomás,M. Alvarez-López,Laure Lemeeet al. Brain, Behavior, and Immunity, 2019, pp.30879-7. ⟨10.1016/j.bbi.2019.11.003⟩ Article dans une revue hal-02404337v1
Deregulation of microRNA expression in monocytes and CD4+ T lymphocytes from patients with axial spondyloarthritis Olivier Fogel,Andreas Bugge Tinggaard,Maud Fagny,Nelly Sigrist,Elodie Rocheet al. Arthritis Research & Therapy, 2019, 21 (1), pp.1-14. ⟨10.1186/s13075-019-1829-7⟩ Article dans une revue hal-03642295v1
Effects of anti-TNF on MiR expression in monocytes and CD4(+) T-Lymphocytes in spondyloarthritis Olivier Fogel,Maud Fagny,Elodie Roche,Nelly Sigrist,Jean-François Deleuzeet al. Arthritis & rheumatology, 2019, 71 Article dans une revue cea-04457182v1
Histopathological Image QTL Discovery of Immune Infiltration Variants Joseph Barry,Maud Fagny,Joseph Paulson,Hugo J.W.L. Aerts,John Platiget al. iScience, 2018, 5, pp.80-89. ⟨10.1016/j.isci.2018.07.001⟩ Article dans une revue hal-03642302v1
Exploring the genetic basis of human population differences in DNA methylation and their causal impact on immune gene regulation Lucas T Husquin,Maxime Rotival,Maud Fagny,Hélène Quach,Nora Zidaneet al. Genome Biology, 2018, 19, pp.222. ⟨10.1186/s13059-018-1601-3⟩ Article dans une revue hal-02352909v1
Epigenome-wide DNA methylation profiling in Progressive Supranuclear Palsy reveals major changes at DLX1 Axel Weber,Sigrid C. Schwarz,Jorg Tost,Dietrich Trümbach,Pia Winteret al. Nature Communications, 2018, 9, pp.2929. ⟨10.1038/s41467-018-05325-y⟩ Article dans une revue cea-01877684v1
Epigenetic clock analysis in long-term meditators Raphaëlle Chaix,Maria Jesús Alvarez-López,Maud Fagny,Laure Lemee,Béatrice Regnaultet al. Psychoneuroendocrinology, 2017, 85, pp.210-214. ⟨10.1016/j.psyneuen.2017.08.016⟩ Article dans une revue pasteur-02555207v1
Exploring regulation in tissues with eQTL networks Maud Fagny,Joseph Paulson,Marieke Kuijjer,Abhijeet Sonawane,Cho-Yi Chenet al. Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (37), ⟨10.1073/pnas.1707375114⟩ Article dans une revue hal-03642025v1
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data Joseph Paulson,Cho-Yi Chen,Camila Lopes-Ramos,Marieke Kuijjer,John Platiget al. BMC Bioinformatics, 2017, 18 (1), pp.437. ⟨10.1186/s12859-017-1847-x⟩ Article dans une revue hal-03642307v1
Trends in DNA Methylation with Age Replicate Across Diverse Human Populations Shyamalika Gopalan,Oana Carja,Maud Fagny,Etienne Patin,Justin Myricket al. Molecular Biology and Evolution, 2017, 206 (3), pp.1659-1674. ⟨10.1534/genetics.116.195594⟩ Article dans une revue hal-03642039v1
Regulatory network changes between cell lines and their tissues of origin Camila Lopes-Ramos,Joseph Paulson,Cho-Yi Chen,Marieke Kuijjer,Maud Fagnyet al. BMC Genomics, 2017, 18 (1), pp.723. ⟨10.1186/s12864-017-4111-x⟩ Article dans une revue hal-03642306v1
Understanding Tissue-Specific Gene Regulation Abhijeet Rajendra Sonawane,John Platig,Maud Fagny,Cho-Yi Chen,Joseph Nathaniel Paulsonet al. Cell Reports, 2017, 21 (4), pp.1077-1088. ⟨10.1016/j.celrep.2017.10.001⟩ Article dans une revue hal-04272697v1
An epigenetic clock analysis of race/ethnicity, sex, and coronary heart disease Steve Horvath,Michael Gurven,Morgan Levine,Benjamin Trumble,Hillard Kaplanet al. Genome Biology, 2016, 17 (1), pp.171. ⟨10.1186/s13059-016-1030-0⟩ Article dans une revue hal-03642312v1
Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes Matthieu Deschamps,Guillaume Laval,Maud Fagny,Yuval Itan,Laurent Abelet al. American Journal of Human Genetics, 2016, 98 (1), pp.5-21. ⟨10.1016/j.ajhg.2015.11.014⟩ Article dans une revue hal-03642313v1
The epigenomic landscape of African rainforest hunter-gatherers and farmers Maud Fagny,Etienne Patin,Maxime Rotival,Julia L. Macisaac,Timothée Flutreet al. Nature Communications, 2015, 6, 11 p. ⟨10.1038/ncomms10047⟩ Article dans une revue pasteur-01238387v1
Exploring the Occurrence of Classic Selective Sweeps in Humans Using Whole-Genome Sequencing Data Sets Maud Fagny,Etienne Patin,David Enard,Luis Barreiro,Lluis Quintana-Murciet al. Molecular Biology and Evolution, 2014, 31 (7), pp.1850-1868. ⟨10.1093/molbev/msu118⟩ Article dans une revue hal-03642315v1

Communication dans un congrès (14)

The Importance of Regulatory Network Structure for Polygenic Trait Heritability and Evolution Maud Fagny PopGroup 59, Diala Abu Awad; Vincent Castric; Thomas Lesaffre; Camille Roux; Roman Stetsenko, Jan 2026, Lille, France Communication dans un congrès hal-05453388v1
Revisiting the functional features of maize dispensable genes Johann Joets.,Maud Fagny,Kevin Baudry,Maëla Mollion,Olivier Turcet al. PAG32, Jan 2025, San Diego (CA), United States Communication dans un congrès hal-05366305v1
Identifying the contribution of transposable elements to cis-regulatory elements in plants Maud Fagny,Johann Joets,Basile Leduque,Leandro Quadrana,Hadi Quesnevilleet al. IBRC2025, Jul 2025, Monte Verità, Switzerland Communication dans un congrès hal-05227710v1
The adaptation of polygenic traits: from genes to phenotypes, are regulatory networks the missing link? Katherine Stone,John Platig,John Quackenbush,Maud Fagny Euro Evo Devo 2024, Claudius Kratochwil, Jun 2024, Helsinki, Finland Communication dans un congrès hal-04646272v1
Gene regulatory network structure help us understand how polygenic phenotypes adapt Katherine Stone,John Platig,Frederic Austerlitz,John Quackenbush,Maud Fagny Evolution 2024 - Virtual, Mark McPeek, Dartmouth; Tracy Heath, Iowa State University; Mike Whitlock, University of British Columbia; Howard Rundle, University of Ottawa; Brian Hollis, University of South Carolina; Alex Wong, Carleton University; April Wright, Southeastern Louisiana University; Mike Wiser, Michigan State University, Jun 2024, Montréal (Québec), Canada Communication dans un congrès hal-04646291v1
MITE-driven dissemenitation of cis-regulatory elements in the maize genome Klaus Von Grafenstein,Abirami Soundiramourtty,Maud Fagny,Karine Alix,Johann Joetset al. CNET2022, Jul 2022, Gif-sur-Yvette, France Communication dans un congrès hal-04478810v1
Distal cis-regulatory elements regulate tissue-specific water-deficit response Maud Fagny 14th annual RECOMB/ISCB Conference on Regulatory & Systems Genomics with DREAM Challenges RSGDREAM 2022, Nov 2022, online/Las Vegas, Nevada, United States Communication dans un congrès hal-04343921v1
Deciphering tissue-specific regulation and contribution of transposable elements to cis-regulatory sequences Maud Fagny,Marieke L. Kuijjer,Maike Stam,Johann Joets,Olivier Turcet al. UCLLN invited seminars, May 2022, Louvain- la-Neuve, Belgium Communication dans un congrès hal-04351623v1
Deciphering tissue-specific regulation and contribution of transposable elements to cis-regulatory sequences Fagny Maud,Kuijer Marieke L.,Stam Maike,Joets Johann,Turc Olivieret al. Epiplant III, Feb 2021, Online, France Communication dans un congrès hal-04351579v1
Identifying key tissue-specific, biological processes by integrating enhancer information in maize gene regulatory networks Fagny Maud,Kuijjer Marieke L.,Stam Maike,Joets Johann,Turc Olivieret al. 63. Annual Maize Genetics Conference, Mar 2021, Online, United States Communication dans un congrès hal-04478817v1
Identification of key tissue-specific, biological processes through integration of enhancer information in maize gene regulatory networks Maud Fagny,Marieke Kuijjer,Maike Stam,Johann Joets,Olivier Turcet al. LEPSE invited seminars, Oct 2020, Online, France Communication dans un congrès hal-04351597v1
Investigating cancer risk germline mutations using eQTL networks Maud Fagny 2018 RECOMB meeting - satellite RECOMB-Genetics, Itsik Pe’er, Columbia University; Eleazar Eskin, University of California, Los Angeles, Apr 2018, Paris, France Communication dans un congrès hal-04330963v1
Human epigenomic variation is driven by historical and recent changes in habitat and lifestyle Maud Fagny SMBE 2015 Vienna, 2015, Vienne (Austria), Austria Communication dans un congrès hal-04330834v1
Genetic and epigenetic determinants of human adaptation to different lifestyles and modes of subsistence Maud Fagny 2014 HUMAN GENOME MEETING: GENOME VARIATION AND HUMAN HEALTH, Apr 2014, Genève (Suisse), Switzerland Communication dans un congrès hal-04330923v1

Poster de conférence (6)

Gene regulatory network structure help us understand how complex phenotypes adapt Katherine Stone,John Platig,Frederic Austerlitz,John Quackenbush,Maud Fagny Evolution 2024, Jul 2024, Montréal (Québec), Canada Poster de conférence hal-04646904v1
Identifying key tissue-specific, biological processes by integrating enhancer information in maize gene regulatory networks Maud Fagny,Marieke L. Kuijjer,Maike Stam,Johann Joets,Olivier Turcet al. Symposium "Signaling through Chromatin" from molecules to ecosystems, Oct 2023, Grenoble, France. Poster de conférence hal-04353449v1
Identifying key tissue-specific, biological processes by integrating enhancer information in maize gene regulatory networks Maud Fagny,Marieke L. Kuijjer,Maike Stam,Johann Joets,Olivier Turcet al. 30. Plant and Animal Genome Conference (PAG 30), Jan 2023, San Diego, United States Poster de conférence hal-04353912v1
Distal cis-regulatory elements regulate tissue-specific water-deficit response Maud Fagny,Johann Joets,Olivier Turc,Claude Welcker,Anthony Venonet al. 14. annual RECOMB/ISCB Conference on Regulatory & Systems Genomics with DREAM Challenges RSGDREAM 2022, Nov 2022, Online, United States. Poster de conférence hal-04343914v1
Distal cis-regulatory elements regulate tissue-specific water-deficit response Maud Fagny,Olivier Turc,Claude Welcker,Anthony Venon,Harry Belcramet al. CSHL Network Biology Meeting 2021, Mar 2021, New-York, United States. Poster de conférence hal-04347190v1
The role of transposable elements on gene expression regulation in maize and its response to drought Maud Fagny,Véronique Jamilloux,Johann Joets,Clémentine Vitte 22nd national congress on transposable elements, Jul 2019, Lyon, France Poster de conférence hal-04330779v1

Pré-publication, Document de travail (4)

Complex Traits Heritability is Highly Clustered in the eQTL Bipartite Network Katherine Stone,John Platig,John Quackenbush,Maud Fagny 2024 Pré-publication, Document de travail hal-04488556v1
Common DNA sequence variation influences epigenetic aging in African populations Gillian L Meeks,Brooke Scelza,Hana M Asnake,Sean Prall,Etienne Patinet al. 2024 Pré-publication, Document de travail (preprint/prepublication) hal-05289047v1
Identification of key tissue-specific, biological processes by integrating enhancer information in maize gene regulatory networks Maud Fagny,Marieke Lydia Kuijjer,Maike Stam,Johann J. Joets,Olivier Turcet al. 2020 Pré-publication, Document de travail hal-02872027v1
Connectivity of variants in eQTL networks dictates reproducibility and functionality Sheila Gaynor,Maud Fagny,Xihong Lin,John Platig,John Quackenbush 2022 Pré-publication, Document de travail hal-03642299v1

Rapport (1)

MSCA-EF-IF-ST Project PATTERNS: Periodic Technical Report Part B Maud Fagny,Frederic Austerlitz CNRS. 2021 Rapport (rapport contrat/projet) hal-04709589v1

Thèse (1)

L'Homme face à son environnement : une histoire génétique et épigénétique du génome humain Maud Fagny Génétique humaine. Université Pierre et Marie Curie - Paris VI, 2015. Français. ⟨NNT : 2015PA066208⟩ Thèse tel-01234659v1

Cours (3)

Bio0 - Bases de la génétique Maud Fagny Master. Bio 0 - Bases de la génétique, Gif-sur Yvette, France. 2024 Cours hal-04709508v1
Using eQTL networks to decipher the architecture of complex traits Maud Fagny Doctoral. NCMM PhD Course in Multi-Omics, NCMM, Oslo, Norway. 2023 Cours hal-04330996v1
Using eQTL networks to functionally characterize regulatory mutations Maud Fagny Doctoral. NCMM PhD Courses in Multi-Omics, NCMM, Oslo, Norway. 2022 Cours hal-04331011v1