Mélisande Blein-Nicolas

Documents

Publications

	Nonlinear network-based quantitative trait prediction from biological data Mélisande Blein-Nicolas , Emilie Devijver , Mélina Gallopin , Emeline Perthame Journal of the Royal Statistical Society: Series C Applied Statistics, 2024, pp.1-20. ⟨10.1093/jrsssc/qlae012⟩ Journal articles hal-04583513v1
	The nitrate transporter-sensor MtNPF6.8 regulates the branched chain amino acid/pantothenate metabolic pathway in barrel medic (Medicago truncatula Gaertn.) root tip Łukasz Tarkowski , Thibault Clochard , Mélisande Blein-Nicolas , Michel Zivy , Thierry Baillau Plant Physiology and Biochemistry, 2024, 206, pp.108213. ⟨10.1016/j.plaphy.2023.108213⟩ Journal articles hal-04480373v1
	Full native timsTOF PASEF-enabled quantitative proteomics with the i2MassChroQ software package Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer Journal of Proteome Research, inPress, Online ahead of print. ⟨10.1021/acs.jproteome.3c00732⟩ Journal articles hal-04645948v2
	Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides Grégoire Prunier , Mehdi Cherkaoui , Albane Lysiak , Olivier Langella , Mélisande Blein-Nicolas BMC Bioinformatics, 2023, 24 (1), pp.421. ⟨10.1186/s12859-023-05555-y⟩ Journal articles hal-04296170v1
	Plasticity QTLs specifically contribute to the genotype × water availability interaction in maize Yacine Djabali , Renaud Rincent , Marie-Laure Martin , Mélisande Blein-Nicolas TAG Theoretical and Applied Genetics, 2023, 136 (11), pp.228. ⟨10.1007/s00122-023-04458-z⟩ Journal articles hal-04002996v2
	Obituary: Dominique Job (1947-2022) Elisabeth Jamet , Marie-Thérèse Esquerré-Tugayé , Karine Gallardo-Guerrero , Norbert Rolland , Michel Zivy Frontiers in Plant Science, 2023, 14, ⟨10.3389/fpls.2023.1188766⟩ Journal articles hal-04098956v1
	Physical Contact between Torulaspora delbrueckii and Saccharomyces cerevisiae Alters Cell Growth and Molecular Interactions in Grape Must Laura Chasseriaud , Warren Albertin , Mélisande Blein-Nicolas , Thierry Balliau , Michel Zivy Beverages, 2023, 9 (3), pp.81. ⟨10.3390/beverages9030081⟩ Journal articles hal-04233435v1
	Sunflower Hybrids and Inbred Lines Adopt Different Physiological Strategies and Proteome Responses to Cope with Water Deficit Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Adeline Chaubet , Alexandra Duhnen Biomolecules, 2023, 13 (7), pp.1110. ⟨10.3390/biom13071110⟩ Journal articles hal-04161450v1
	Dynamics of Protein Phosphorylation during Arabidopsis Seed Germination Emmanuel Baudouin , Juliette Puyaubert , Patrice Meimoun , Mélisande Blein-Nicolas , Marlène Davanture International Journal of Molecular Sciences, 2022, 23 (13), pp.7059. ⟨10.3390/ijms23137059⟩ Journal articles hal-03705408v1
	A combined test for feature selection on sparse metaproteomics data—an alternative to missing value imputation Sandra Plancade , Magali Berland , Mélisande Blein-Nicolas , Olivier Langella , Ariane Bassignani PeerJ, 2022, 10, pp.e13525. ⟨10.7717/peerj.13525⟩ Journal articles hal-04146583v1
	Proteomic data from leaves of twenty-four sunflower genotypes under water deficit Thierry Balliau , Harold Duruflé , Nicolas Blanchet , Melisande Blein-Nicolas , Nicolas Langlade OCL Oilseeds and fats crops and lipids, 2021, 28, ⟨10.1051/ocl/2020074⟩ Journal articles hal-03139476v1
	Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis Maria Urrutia , Melisande Blein-Nicolas , Sylvain Prigent , Stéphane Bernillon , Catherine Deborde Plant, Cell and Environment, 2021, 44 (5), pp.1504-1521. ⟨10.1111/pce.13993⟩ Journal articles hal-03107184v1
	Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets Ariane Bassignani , Sandra Plancade , Magali Berland , Melisande Blein-Nicolas , Alain Guillot Journal of Proteome Research, 2021, 20 (3), pp.1522-1534. ⟨10.1021/acs.jproteome.0c00669⟩ Journal articles hal-03135575v1
	A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize Melisande Blein-Nicolas , Sandra Sylvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Genome Research, 2020, 30 (11), pp.1593-1604. ⟨10.1101/gr.255224.119⟩ Journal articles hal-03009577v1
	Transcriptomic and proteomic data in developing tomato fruit Isma Belouah , Camille Bénard , Alisandra Denton , Melisande Blein-Nicolas , Thierry Balliau Data in Brief, 2020, 28, pp.1-8. ⟨10.1016/j.dib.2019.105015⟩ Journal articles hal-02539392v1
	Peptide filtering differently affects the performances of XIC-based quantification methods Isma Belouah , Melisande Blein-Nicolas , Thierry Balliau , Yves Gibon , Michel Zivy Journal of Proteomics, 2019, 193, pp.131-141. ⟨10.1016/j.jprot.2018.10.003⟩ Journal articles hal-02327322v1
	Modeling Protein Destiny in Developing Fruit Isma Belouah , Christine Nazaret , Pierre Pétriacq , Sylvain Prigent , Camille Bénard Plant Physiology, 2019, 180 (3), pp.1709-1724. ⟨10.1104/pp.19.00086⟩ Journal articles hal-02327302v1
	Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome Celine Henry , Lucia Haller , Melisande Blein-Nicolas , Michel Zivy , Alexis Canette Frontiers in Microbiology, 2019, 10, pp.1329. ⟨10.3389/fmicb.2019.01329⟩ Journal articles hal-02391885v1
	Evaluation of optimized tube-gel methods of sample preparation for large-scale plant proteomics Thierry Balliau , Melisande Blein-Nicolas , Michel Zivy Proteomes, 2018, 6 (1(6)), ⟨10.3390/proteomes6010006⟩ Journal articles hal-01784903v1
	X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification Olivier Langella , Benoît Valot , Thierry Balliau , Mélisande Blein-Nicolas , Ludovic Bonhomme Journal of Proteome Research, 2017, 16 (2), pp.494-503. ⟨10.1021/acs.jproteome.6b00632⟩ Journal articles hal-01484169v1
	Quantitative proteomics analysis confirmed oxidative metabolism predominates in Streptomyces coelicolor versus glycolytic metabolism in Streptomyces lividans Aaron Millan-Oropeza , Celine Henry , Melisande Blein-Nicolas , Anne Aubert , Fathi Moussa Journal of Proteome Research, 2017, 16 (7), pp.2597-2613. ⟨10.1021/acs.jproteome.7b00163⟩ Journal articles hal-01569508v1
	Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics Melisande Blein-Nicolas , Michel Zivy Biochimica et Biophysica Acta Proteins and Proteomics, 2016, 1864 (8), pp.883 - 895. ⟨10.1016/j.bbapap.2016.02.019⟩ Journal articles hal-01532597v1
	A systems approach to elucidate heterosis of protein abundances in yeast Melisande Blein-Nicolas , Warren Albertin , Telma da Silva , Benoît Valot , Thierry T. Balliau Molecular and Cellular Proteomics, 2015, 14 (8), pp.2056-2071. ⟨10.1074/mcp.M115.048058⟩ Journal articles hal-02636704v1
	Yeast proteome variations reveal different adaptive responses to grape must fermentation Melisande Blein-Nicolas , Warren Albertin , Benoit B. Valot , Philippe Marullo , Delphine Sicard Molecular Biology and Evolution, 2013, 30 (6), pp.1368-1383. ⟨10.1093/molbev/mst050⟩ Journal articles hal-02648058v1
	Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence Amandine Delteil , Melisande Blein-Nicolas , Odile Faivre-Rampant , Amira Guellim , Joan Estevan Molecular Plant Pathology, 2012, 13 (1), pp.72-82. ⟨10.1111/j.1364-3703.2011.00731.x⟩ Journal articles hal-02644647v1
	In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches. Mathias Lorieux , Mélisande Blein , Jaime Lozano , Mathieu Bouniol , Gaétan Droc Plant Biotechnology Journal, 2012, 10 (5), pp.555-68. ⟨10.1111/j.1467-7652.2012.00689.x⟩ Journal articles hal-00821958v1
	Including shared peptides for estimating protein abundances: A significant improvement for quantitative proteomics Melisande Blein-Nicolas , Hao Xu , Dominique de Vienne , Christophe Giraud , Sylvie Huet Proteomics, 2012, 12 (18), pp.2797-2801. ⟨10.1002/pmic.201100660⟩ Journal articles hal-02645398v1
	Oculimacula yallundae lifestyle revisited: relationships between the timing of eyespot symptom appearance, the development of the pathogen and the responses of infected partially resistant wheat plants M. Blein , A. Levrel , J. Lemoine , V. Gautier , M. Chevalier Plant Pathology, 2009, 58 (1), pp.1-11. ⟨10.1111/j.1365-3059.2008.01940.x⟩ Journal articles hal-00730032v1
	A cytomolecular approach to assess the potential of gene transfer from a crop (Triticum turgidum L.) to a wild relative (Aegilops geniculata Roth.) Marta Cifuentes , M. Blein , Elena Benavente TAG Theoretical and Applied Genetics, 2006, 112 (4), pp.657-664. ⟨10.1007/s00122-005-0168-z⟩ Journal articles hal-02659651v1

	Proteomics-based systems approach of maize response to water deficit Melisande Blein-Nicolas , Yacine Djabali , Claude Welcker , Llorenç Cabrera-Bosquet , Stephane Nicolas 5th InPPO Conference, May 2023, Thessalonique, Greece Conference papers hal-04302629v1
	On the fate of lipids and proteins during Chia (Salvia hispanica) germination and seedlings growth Thierry Chardot , Victor Labat , Christelle Louis-Mondésir , Sihem Hentati , Jean-Chrisologue Totozafy Colloque Graines 2023, INRAE, Nov 2023, Versailles, France Conference papers hal-04459323v1
	Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution. Willy Vincent Bienvenut , Olivier Langella , Thierry Balliau , Filippo Rusconi , Marlène Davanture ProteoVilamoura, Spanish, French and Portuguese Proteomics Societies, May 2022, VilaMoura, Portugal Conference papers hal-03815633v1
	Rôles des variations structurales dans la construction des caractères moléculaires et phénotypiques Yacine Djabali , Melisande Blein-Nicolas , Stephane Nicolas Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France Conference papers hal-03878368v1
	Drought response QTLs detected on phenotypic ratios contribute to the genotype x environment interaction. Yacine Djabali , Renaud Rincent , Marie-Laure Martin-Magniette , Melisande Blein-Nicolas XXVth EUCARPIA Maize and Sorghum Conference, May 2022, Belgrade, Serbia Conference papers hal-03879700v1
	Développements pour la protéomique végétale à haut-débit Melisande Blein-Nicolas , Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France Conference papers hal-03878360v1
	Combining phenotypic, metabolome and proteome data to study maize response to a mild nitrogen deficit Maria Urrutia , Melisande Blein-Nicolas , Olivier Fernandez , Stéphane Bernillon , Mickael Maucourt Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France Conference papers hal-03878405v1
	A systems approach of drought tolerance in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera AMAIZING Final Conference, Sep 2021, Visioconférence, France Conference papers hal-03879824v1
	SpecOMS, an open modification search approach challenging high-throughput single amino acid variations identification Luciana de Oliveira , Olivier Langella , Thierry Balliau , Dominique Tessier , Melisande Blein-Nicolas 4th INPPO Conference, Mar 2021, Visioconférence, France Conference papers hal-03879763v1
	A systems approach of drought response in maize Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera-Bosquet , Sandra Negro Séminaire du département des Science de l'Environnement de l'Université de Bordeaux, Nov 2021, Bordeaux, France Conference papers hal-03879809v1
	SpecOMS, an open search approach challenging the identification of peptides showing sequence polymorphism Luciana de Oliveira , Olivier Langella , Thierry Balliau , Dominique Tessier , Melisande Blein-Nicolas Journées du Protéome Vert, Jun 2021, Visioconférence, France Conference papers hal-03879748v1
	A systems approach of drought response in maize Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera , Claude Welcker Journée SPS-CLAND, Sep 2021, Visioconférence, France Conference papers hal-03879816v1
	Multivariate analyses of heterogeneous omics data highlights the emergence of novel molecular and physiological strategies of drought response in sunflower. Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Melisande Blein-Nicolas , Brigitte Mangin Omics Days, Feb 2020, Montpellier, France Conference papers hal-03509300v1
	Systems genetics of drought-related traits in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Evolutionary Systems Biology congress, Feb 2020, Cambridge, United Kingdom Conference papers hal-03879843v1
	Systems genetics of drought tolerance in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Symposium GisBV, Oct 2019, Paris, France Conference papers hal-03879857v1
	Sunflower hybrids and inbred lines adopt different molecular and physiological strategies to respond to water deficit Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Melisande Blein-Nicolas , Adeline Chaubet Green Proteome, Jun 2019, Paris, France Conference papers hal-03509317v1
	Integrating proteomics and genomics into systems genetics to better understand the mechanisms of drought tolerance in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera Journée SFEAP-SFSM, Apr 2019, Paris, France Conference papers hal-03879865v1
	Statistical learning on heterogeneous omics data highlights the molecular basis of heterosis of drought response in sunflower Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Melisande Blein-Nicolas , A Chaubet Plant and Animal Genome XXVII, Jan 2019, San Diego, United States Conference papers hal-02391988v1
	Peptide filtering differently affects the performances of XIC-based quantifcation methods Melisande Blein-Nicolas , Isma Belouah , Thierry Balliau , Yves Gibon , Michel Zivy Journées Protéome Vert, Apr 2018, Paris, France Conference papers hal-03879922v1
	Proteome responses to water deficit in sunflower: genetic variability, heterosis and links with phenotypic traits. Harold Duruflé , Thierry Balliau , Melisande Blein-Nicolas , Nicolas Blanchet , Adeline Chaubet INPPO World Congress, Sep 2018, Padoue, Italy Conference papers hal-03509356v1
	Approaching absolute quantification using label-free shotgun proteomics coupled with external protein standards spiked in yeast extracts Aaron Millan Oropeza , Melisande Blein-Nicolas , Michel Zivy , Véronique Monnet , Celine Henry SFEAP 2018 Congress, Oct 2018, Albi, France. pp.1 Conference papers hal-02349950v1
	GWAS for protein expression under normal and water deficit conditions in maize leaves Melisande Blein-Nicolas , Thierry Balliau , Llorenç Cabrera-Bosquet , Hélène Corti , Claude Welcker Journées du Protéome Vert, Mar 2017, Paris, France Conference papers hal-03879954v1
	WAKomics: large-scale functional analysis of the WAK genes involved in the rice/Magnaporthe oryzae interaction A. Delteil , M. Blein , Corinne Michel , Jean-Benoit J.-B. Morel 8. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France Conference papers hal-02758451v1
	Exploitation de la collection de mutants riz Génoplante pour l'identification de gènes d'intérêt agronomique Mélisande Blein , Chloé Fallet , Nabila Yahiaoui , Veronique V. Chalvon-Poulier , Corinne Michel Biotechnologies végétales et gestion durable des resistances face à des stress biotiques et abiotiques, Jun 2008, Rennes, France. p. 170 Conference papers hal-02821581v1

	Large scale plant protein turnover measurement Willy Vincent Bienvenut , Marie-Hélène Andrieu , Olivier Langella , Thierry Balliau , Sophie Colombie Annual ASMS conference, Jun 2024, Anaheim (CA), United States Conference poster hal-04590280v1
	i2MassChroQ : full native timsTOF PASEF-enabled quantitative proteomics Olivier Langella , Thierry Balliau , Marlène Davanture , Mélisande Blein-Nicolas , Filippo Rusconi EuBIC-MS Winter School 2024, Jan 2024, Winterberg, Germany Conference poster hal-04321638v1
	Merging SpecOMS and X!Tandem identification results using machine learning algorithm in i2MassChroQ Olivier Langella , Thierry Balliau , Marlène Davanture , Filippo Rusconi , Melisande Blein-Nicolas ProteoAix 2023 the 3rd Joint Meeting of Spanish, French, and Portuguese Proteomics Societies, Jun 2023, Aix en Provence, France Conference poster hal-04103233v1
	Evaluation of the efficiency of the SPEED protein extraction protocol on plant samplesEvaluation of the efficiency of the SPEED protein extraction protocol on plant samples Thierry Balliau , Shabnam Huseynova , Marlène Davanture , Melisande Blein-Nicolas ProteoAix, Jun 2023, Aix-en-Provence, France Conference poster hal-04302587v1
	Open Modification Search using SpecOMS and i2MassChroQ Olivier Langella , Luciana de Oliveira , Michel Zivy , Melisande Blein-Nicolas , Dominique Tessier analytics 2022, Sep 2022, Nantes, France Conference poster hal-03735820v1
	Upgrading X!TandemPipeline and MassChroQ for fast and accurate timsTOF native raw data support for quantitative proteomics Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer ProteoVilamoura 2022, May 2022, Vilamoura, Portugal Conference poster hal-03687443v1
	X!TandemPipeline++: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer 70th ASMS Conference on Mass Spectrometry and Allied Topics ( ASMS 2022 ), Jun 2022, Minneapolis, United States. Conference poster hal-03687564v1
	Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance Yacine Djabali , Melisande Blein-Nicolas , Annick Moing , Jorge Duarte , Stéphane Bernillon Analytics 2022, Sep 2022, Nantes, France. Conference poster hal-03879730v1
	Plateforme d'Analyse Protéomique de Paris Sud-Ouest (PAPPSO) Céline Henry , Thierry Balliau , Willy Vincent Bienvenut , Marlène Davanture , Olivier Langella Journées scientifiques Biosphera, Oct 2022, Palaiseau, France Conference poster hal-03878417v1
	Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution Willy Vincent Bienvenut , Liam Le Goffic , Olivier Langella , Thierry Balliau , Melisande Blein-Nicolas Analytics 2022, Sep 2022, Nantes, France Conference poster hal-03773594v1
	i2MassChroQ: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer Analytics 2022, Sep 2022, Nantes, France Conference poster hal-03776788v1
	Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance Yacine Djabali , Mélisande Blein , Annick Moing , Jorge Duarte , Thierry Berton 63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States Conference poster hal-03368764v1
	Sub optimal 15N metabolic labelling in plant to determine protein turnovers: A new look at the isotopic distribution Willy Vincent Bienvenut , Olivier Langella , Thierry Baillau , Filippo Rusconi , Marlène Davanture InPPO meeting, Mar 2021, Vancouvert, Canada Conference poster hal-03683573v1
	Systems genetics of drought-related traits in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Spectrométrie de Masse et Analyse Protéomique (SMAP), Sep 2019, Strasbourg, France. Conference poster hal-03879878v1
	Comparaison des méthodes SP3, STrap, Tube-Gel et digestion liquide pour la préparation d'échantillons végétaux Thierry Balliau , Johanna Bruce , Melisande Blein-Nicolas , Michel Zivy SMAP, Sep 2019, Strasbourg, France Conference poster hal-03879894v1
	Combined metabolomic and proteomic profiling of maize leaf to reveal metabolic responses to cold temperatures Maria Urrutia , Melisande Blein-Nicolas , Stéphane Bernillon , Catherine Deborde , Mickaël Maucourt 11. Journées Scientifiques du RFMF, May 2018, Liège, Belgium. pp.P25, 2018, 11. Journées Scientifiques du RFMF Conference poster hal-03125712v1
	Systems genetics of drought-related traits in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet 60th Annual Maize Genetics Conference, Mar 2018, Paris, France Conference poster hal-03879934v1
	A systems biology approach to study the genetic variability of proteome responses to water deficit in sunflower Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Mélisande Blein-Nicolas , Adeline Chaubet First International Plant Systems Biology meeting, Sep 2018, Roscoff, France. Conference poster hal-03511745v1
	Genome wide association study for protein expression under normal and water deficit conditions in maize leaves Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Spectrométrie de Masse, Métabolomique et Analyse Protéomique (SMMAP) 2017, Oct 2017, Marne-la-Vallée, France. Conference poster hal-03879943v1
	MassChroQ : A versatile tool for mass spectrometry quantification Edlira Nano , Benoit Valot , Olivier Langella , Ludovic Bonhomme , Mélisande Blein Final COST meeting : Plant Proteomics in Europe, 2011, May 2011, Dijon, France Conference poster hal-03663220v1

	A combined test for feature selection on sparse metaproteomics data - alternative to missing value imputation Sandra Plancade , Magali Berland , Mélisande Blein-Nicolas , Olivier Langella , Ariane Bassignani 2021 Preprints, Working Papers, ... hal-03276724v1
	Proteomic data from leaves of twenty-four sunflower genotypes under water deficit Thierry Balliau , Harold Duruflé , Nicolas Blanchet , Melisande Blein-Nicolas , Nicolas B. Langlade 2020 Preprints, Working Papers, ... hal-02544815v1
	Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize M. Blein , Sandra Silvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera Bosquet 2019 Preprints, Working Papers, ... hal-02788569v1

	DMP du projet "PAPPSO Proteomics facility" Mélisande Blein , Olivier Langella , Filippo Rusconi [0] INRAE. 2021 Reports hal-03653233v1

Mélisande Blein-Nicolas

Publications

Nonlinear network-based quantitative trait prediction from biological data

The nitrate transporter-sensor MtNPF6.8 regulates the branched chain amino acid/pantothenate metabolic pathway in barrel medic (Medicago truncatula Gaertn.) root tip

Full native timsTOF PASEF-enabled quantitative proteomics with the i2MassChroQ software package

Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides

Plasticity QTLs specifically contribute to the genotype × water availability interaction in maize

Obituary: Dominique Job (1947-2022)

Physical Contact between Torulaspora delbrueckii and Saccharomyces cerevisiae Alters Cell Growth and Molecular Interactions in Grape Must

Sunflower Hybrids and Inbred Lines Adopt Different Physiological Strategies and Proteome Responses to Cope with Water Deficit

Dynamics of Protein Phosphorylation during Arabidopsis Seed Germination

A combined test for feature selection on sparse metaproteomics data—an alternative to missing value imputation

Proteomic data from leaves of twenty-four sunflower genotypes under water deficit

Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis

Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets

A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize

Transcriptomic and proteomic data in developing tomato fruit

Peptide filtering differently affects the performances of XIC-based quantification methods

Modeling Protein Destiny in Developing Fruit

Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome

Evaluation of optimized tube-gel methods of sample preparation for large-scale plant proteomics

X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification

Quantitative proteomics analysis confirmed oxidative metabolism predominates in Streptomyces coelicolor versus glycolytic metabolism in Streptomyces lividans

Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics

A systems approach to elucidate heterosis of protein abundances in yeast

Yeast proteome variations reveal different adaptive responses to grape must fermentation

Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence

In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches.

Including shared peptides for estimating protein abundances: A significant improvement for quantitative proteomics

Oculimacula yallundae lifestyle revisited: relationships between the timing of eyespot symptom appearance, the development of the pathogen and the responses of infected partially resistant wheat plants

A cytomolecular approach to assess the potential of gene transfer from a crop (Triticum turgidum L.) to a wild relative (Aegilops geniculata Roth.)

Proteomics-based systems approach of maize response to water deficit

On the fate of lipids and proteins during Chia (Salvia hispanica) germination and seedlings growth

Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution.

Rôles des variations structurales dans la construction des caractères moléculaires et phénotypiques

Drought response QTLs detected on phenotypic ratios contribute to the genotype x environment interaction.

Développements pour la protéomique végétale à haut-débit

Combining phenotypic, metabolome and proteome data to study maize response to a mild nitrogen deficit

A systems approach of drought tolerance in maize

SpecOMS, an open modification search approach challenging high-throughput single amino acid variations identification

A systems approach of drought response in maize

SpecOMS, an open search approach challenging the identification of peptides showing sequence polymorphism

A systems approach of drought response in maize

Multivariate analyses of heterogeneous omics data highlights the emergence of novel molecular and physiological strategies of drought response in sunflower.

Systems genetics of drought-related traits in maize

Systems genetics of drought tolerance in maize

Sunflower hybrids and inbred lines adopt different molecular and physiological strategies to respond to water deficit

Integrating proteomics and genomics into systems genetics to better understand the mechanisms of drought tolerance in maize

Statistical learning on heterogeneous omics data highlights the molecular basis of heterosis of drought response in sunflower

Peptide filtering differently affects the performances of XIC-based quantifcation methods

Proteome responses to water deficit in sunflower: genetic variability, heterosis and links with phenotypic traits.

Approaching absolute quantification using label-free shotgun proteomics coupled with external protein standards spiked in yeast extracts

GWAS for protein expression under normal and water deficit conditions in maize leaves

WAKomics: large-scale functional analysis of the WAK genes involved in the rice/Magnaporthe oryzae interaction

Exploitation de la collection de mutants riz Génoplante pour l'identification de gènes d'intérêt agronomique

Large scale plant protein turnover measurement

i2MassChroQ : full native timsTOF PASEF-enabled quantitative proteomics

Merging SpecOMS and X!Tandem identification results using machine learning algorithm in i2MassChroQ

Evaluation of the efficiency of the SPEED protein extraction protocol on plant samplesEvaluation of the efficiency of the SPEED protein extraction protocol on plant samples

Open Modification Search using SpecOMS and i2MassChroQ

Upgrading X!TandemPipeline and MassChroQ for fast and accurate timsTOF native raw data support for quantitative proteomics

X!TandemPipeline++: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Plateforme d'Analyse Protéomique de Paris Sud-Ouest (PAPPSO)

Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution

i2MassChroQ: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Sub optimal 15N metabolic labelling in plant to determine protein turnovers: A new look at the isotopic distribution

Systems genetics of drought-related traits in maize

Comparaison des méthodes SP3, STrap, Tube-Gel et digestion liquide pour la préparation d'échantillons végétaux

Combined metabolomic and proteomic profiling of maize leaf to reveal metabolic responses to cold temperatures

Systems genetics of drought-related traits in maize

A systems biology approach to study the genetic variability of proteome responses to water deficit in sunflower

Genome wide association study for protein expression under normal and water deficit conditions in maize leaves

MassChroQ : A versatile tool for mass spectrometry quantification

A combined test for feature selection on sparse metaproteomics data - alternative to missing value imputation

Proteomic data from leaves of twenty-four sunflower genotypes under water deficit

Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize

DMP du projet "PAPPSO Proteomics facility"