Michael Alaux Research engineer at INRAE

Identifiants chercheurs

IdHAL :

michael-alaux

ORCID :

0000-0001-9356-4072

Publications

Article dans une revue (30)

Wheat historical phenotypic data from European genebanks as an important resource for research and breeding Erwan Le Floch,Anne-Françoise Adam-Blondon,Michael Alaux,Etienne Bardet,Noor Baset al. Scientific Data , In press, ⟨10.1038/s41597-026-06908-x⟩ Article dans une revue (data paper) hal-05549503v1
BrAPI v2: real-world applications for data integration and collaboration in the breeding and genetics community Peter Selby,Rafael Abbeloos,Anne-Francoise Adam-Blondon,Francisco J. Agosto-Pérez,Michael Alauxet al. Database - The journal of Biological Databases and Curation, 2025, 2025, pp.baaf048. ⟨10.1093/database/baaf048⟩ Article dans une revue hal-05290990v1
Mapping bread wheat trait ontologies for semantic interoperability Claire Nédellec,Sophie Aubin,Clara Sauvion,Liliana Ibanescu,Sonia Bravoet al. F1000Research, 2024, pp.1102. ⟨10.12688/f1000research.154860.1⟩ Article dans une revue hal-04717147v1
SyntenyViewer: a comparative genomics-driven translational research tool Raphael Flores,Cécile Huneau,Laura Burlot,Mathilde Lainé,Erik Kimmelet al. Database - The journal of Biological Databases and Curation, 2023, 2023, ⟨10.1093/database/baad027⟩ Article dans une revue hal-04099923v1
Capturing Wheat Phenotypes at the Genome Level Babar Hussain,Bala A Akpınar,Michael Alaux,Ahmed M Algharib,Deepmala Sehgalet al. Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.851079⟩ Article dans une revue hal-03740520v1
Breeding for Economically and Environmentally Sustainable Wheat Varieties: An Integrated Approach from Genomics to Selection Etienne Paux,Stéphane Lafarge,François Balfourier,Jérémy Derory,Gilles Charmetet al. Biology, 2022, 11 (1), pp.1-28. ⟨10.3390/biology11010149⟩ Article dans une revue hal-03529813v1
Meeting the Challenges Facing Wheat Production: The Strategic Research Agenda of the Global Wheat Initiative Peter Langridge,Michael Alaux,Nuno Felipe Almeida,Karim Ammar,Michael Baumet al. Agronomy, 2022, 12 (11), pp.2767. ⟨10.3390/agronomy12112767⟩ Article dans une revue hal-03942478v1
Tracing the ancestry of modern bread wheats Caroline Pont,Thibault Leroy,Michael Seidel,Alessandro Tondelli,Wandrille Ducheminet al. Nature Genetics, 2019, 51 (5), pp.905-911. ⟨10.1038/s41588-019-0393-z⟩ Article dans une revue hal-02154676v1
RepetDB: a unified resource for transposable element references Joëlle Amselem,Guillaume Cornut,Nathalie Choisne,Michael Alaux,Françoise Alfama Depauwet al. Mobile DNA, 2019, 10, pp.1-8. ⟨10.1186/s13100-019-0150-y⟩ Article dans une revue hal-02625212v1
Applying FAIR principles to plant phenotypic data management in GnpIS Cyril Pommier,Célia Michotey,Guillaume Cornut,Pierre Roumet,Eric Duchêneet al. Plant Phenomics, 2019, 2019, pp.1-15. ⟨10.34133/2019/1671403⟩ Article dans une revue hal-02624031v1
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data Michael Alaux,Jane Rogers,Thomas Letellier,Raphaël Flores,Françoise Alfamaet al. Genome Biology, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩ Article dans une revue hal-02278879v1
Shifting the limits in wheat research and breeding using a fully annotated reference genome . International Wheat Genome Sequencing Consortium (iwgsc),Arnaud Bellec,Helene Berges,Sonia Vautrin,Michael Alauxet al. Science, 2018, 361 (6403), pp.7191. ⟨10.1126/science.aar7191⟩ Article dans une revue hal-01885399v1
Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.) Umar Quraishi,Caroline Pont,Qurat-Ul Ain,Raphaël Flores,Laura Burlotet al. Frontiers in Plant Science, 2017, 8, pp.1-12. ⟨10.3389/fpls.2017.01843⟩ Article dans une revue hal-02285542v1
Developing data interoperability using standards: A wheat community use case Esther Dzale Yeumo,Michaël Alaux,Elizabeth Arnaud,Sophie Aubin,Ute Baumannet al. F1000Research, 2017, 6 (1843), pp.1843. ⟨10.12688/f1000research.12234.1⟩ Article dans une revue lirmm-01652022v2
Physical Map of the Short Arm of Bread Wheat Chromosome 3D Kateřina Holušová,Jan Vrána,Barbora Balcárková,Zeev Frenkel,Benoît Darrieret al. PLANT GENOME, 2017, 10 (2), ⟨10.3835/plantgenome2017.03.0021⟩ Article dans une revue hal-01717923v1
Reconciling the evolutionary origin of bread wheat (Triticum aestivum) Moaine El Baidouri,Florent Murat,Maeva Veyssière,Mélanie Molinier,Raphaël-Gauthier Floreset al. New Phytologist, 2016, 213 (3), ⟨10.1111/nph.14113⟩ Article dans une revue hal-01361976v1
Towards an open grapevine information system Anne-Françoise Adam-Blondon,Michael Alaux,Cyril Pommier,D Cantu,Z-M Chenget al. Horticulture research, 2016, 3, pp.16056. ⟨10.1038/hortres.2016.56⟩ Article dans une revue (article de synthèse) hal-01404714v1
TransPLANT resources for triticeae genomic data Manuel Spannagl,Michael M. Alaux,Matthias Lange,Dan M. Bolser,Kai Christian Baderet al. PLANT GENOME, 2016, 9 (1), 13 p. ⟨10.3835/plantgenome2015.06.0038⟩ Article dans une revue hal-02635899v1
High-throughput physical map anchoring via BAC-pool sequencing Katerina Cvikova,Federica Cattonaro,Michael M. Alaux,Nils Stein,Klaus F. X. Mayeret al. BMC Plant Biology, 2015, 15, ⟨10.1186/s12870-015-0429-1⟩ Article dans une revue hal-02630859v1
Structural and Functional Partitioning of Bread Wheat Chromosome 3B Frédéric Choulet,Adriana A. Alberti,Sébastien Theil,Natasha Marie Glover,Valérie Barbeet al. Science, 2014, 345 (6194), ⟨10.1126/science.1249721⟩ Article dans une revue hal-02638189v1
Genome interplay in the grain transcriptome of hexaploid bread wheat Matthias Pfeifer,Karl G. Kugler,Simen R. Sandve,Bujie Zhan,Heidi Rudiet al. Science, 2014, 345 (6194), pp.287-287. ⟨10.1126/science.1250091⟩ Article dans une revue hal-02889033v1
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome . International Wheat Genome Sequencing Consortium (iwgsc),Michael M. Alaux,Françoise F. Alfama-Depauw,Frédéric Choulet,Loïc Coudercet al. Science, 2014, 345 (6194), pp.1251788. ⟨10.1126/science.1251788⟩ Article dans une revue hal-02640843v1
GnpIS: an information system to integrate genetic and genomic data from plants and fungi Delphine D. Steinbach,Michael M. Alaux,Joelle J. Amselem,Nathalie Choisne,Sophie S. Durandet al. Database - The journal of Biological Databases and Curation, 2013, 2013, pp.1-9. ⟨10.1093/database/bat058⟩ Article dans une revue hal-02648084v1
Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes Caroline C. Pont,Florent Murat,Sébastien S. Guizard,Raphaël-Gauthier R.-G. Flores,Séverine S. Foucrieret al. The Plant Journal, 2013, pp.1-29. ⟨10.1111/tpj.12366⟩ Article dans une revue hal-00964421v1
Chado controller: advanced annotation management with a community annotation system Valention Guignon,Gaëtan Droc,Michael M. Alaux,Franc-Christophe Baurens,Olivier Garsmeuret al. Bioinformatics, 2012, 28 (7), pp.1054-1056. ⟨10.1093/bioinformatics/bts046⟩ Article dans une revue hal-02651830v1
TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes. Philippe Leroy,Nicolas Guilhot,Hiroaki Sakai,Aurélien Bernard,Frédéric Chouletet al. Frontiers in Plant Science, 2012, 3, pp.5. ⟨10.3389/fpls.2012.00005⟩ Article dans une revue hal-00753407v1
Cabomba as a model for studies of early angiosperm evolution. Aurelie C M Vialette-Guiraud,Michael Alaux,Fabrice Legeai,Cedric Finet,Pierre Chambrieret al. Annals of Botany, 2011, 108 (4), pp.589-98. ⟨10.1093/aob/mcr088⟩ Article dans une revue hal-00855948v1
Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis Etienne Paux,Fabrice F. Legeai,Nicolas N. Guilhot,Anne-Francoise A.F. Adam-Blondon,Michael M. Alauxet al. Functional and Integrative Genomics, 2008, 8 (1), pp.29-32. ⟨10.1007/s10142-007-0068-1⟩ Article dans une revue istex hal-00964137v1
A Physical Map of the 1-Gigabase Bread Wheat Chromosome 3B Etienne Paux,Pierre Sourdille,Jerome J. Salse,Cyrille C. Saintenac,Frédéric Chouletet al. Science, 2008, 322 (5898), pp.101-104. ⟨10.1126/science.1161847⟩ Article dans une revue hal-00964135v1
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Olivier Jaillon,Jean-Marc Aury,Benjamin Noel,Alberto Policriti,Christian Clepetet al. Nature, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩ Article dans une revue inria-00180136v1

Communication dans un congrès (42)

Preliminary Results from the IWGSC Wheat Diversity Project Joshua C Stein,Kevin Fengler,Victor Llaca,Elodie Belmonte,Vincent Pailleret al. PAG 33, Jan 2026, San diego, United States Communication dans un congrès hal-05518160v1
WheatIS EWG annual meeting 2025 Michael Alaux PAG 32, Jan 2025, San Diego (CA), United States Communication dans un congrès hal-05528849v1
Genetic Resources Data Exchange and Findability for the French Plant Genebanks Using BrAPI Michael Alaux,Anne-Françoise Adam-Blondon,Alice Boizet,Raphael Flores,Nicolas Francillonneet al. PAG 32, Jan 2025, San Diego (CA), United States Communication dans un congrès hal-05528802v1
Find Genomic, Genetic and Phenomic Data for Wheat Using the WheatIS Data Discovery Tool Michael Alaux,Mario Caccamo,Sarah Dyer,David Edwards,Raphaël Floreset al. PAG 32, Jan 2025, San Diego (CA), United States Communication dans un congrès hal-05528830v1
Les services de FAIRification des données à l’URGI : cas d’utilisation par des projets/consortium nationaux et internationaux Michaël Alaux,Anne-Françoise Adam-Blondon,Françoise Alfama,Etienne Bardet,Raphaël Floreset al. Réunion annuelle de l'IFB, Dec 2025, Paris, France Communication dans un congrès hal-05530229v1
Interopérabilité des données en sciences de la vie : contexte, ressources et cas d’utilisation Michaël Alaux,Anne-Françoise Adam-Blondon Assises Nationale des Données Ouvertes de la Recherche, Ministère de l'Enseignement Supérieur, de la Recherche et de l'Espace, Dec 2025, Gif-sur-Yvette, France Communication dans un congrès hal-05514771v1
IWGSC data repository news and overview of the plans for the WheatIS Michael Alaux PAG XXX - Plant and Animal Genome Conference, Jan 2023, San Diego, United States Communication dans un congrès hal-04537219v1
WheatIS EWG annual meeting 2023 Michael Alaux PAG XXX - Plant and Animal Genome Conference, Jan 2023, San Diego, United States Communication dans un congrès hal-04536690v1
Feedback from the wheat community: the case of the WheatIS Michael Alaux Grapedia kickoff meeting, Nov 2022, Online, Spain Communication dans un congrès hal-04536615v1
Beyond COST Action INTEGRAPE: The Grapevine Genomics Encyclopedia Initiative José Tomàs Matus,Anne-Françoise Adam-Blondon,Mario Pezzotti,Camille Rustenholz,Jérome Grimpletet al. XIII. International Symposium on Grapevine Breeding and Genetics, JKI, Jul 2022, Landau, Germany. 1 p Communication dans un congrès hal-05283598v1
WheatIS EWG updates Michael Alaux Wheat Initiative Jamboree, Oct 2022, Carlow, Ireland Communication dans un congrès hal-04536643v1
Developing infrastructures for FAIR data in plant biology Cyril Pommier,Guillaume Cornut,Michael Alaux,Windpouire Esther Dzale Yeumo,Raphaël Floreset al. Gatersleben Research Conference - Applied Bioinformatics for crops (GRC2019), IPK, Mar 2019, Gatersleben, Germany Communication dans un congrès hal-03316569v1
Linking the International Wheat Genome Sequencing Consortium Bread Wheat Reference Genome Sequence to Wheat Genetic and Phenomic Data Michael Alaux PAG XXVII - Plant and Animal Genome Conference, Jan 2019, San Diego, United States Communication dans un congrès hal-04536576v1
Updates on the WheatIS tools Michael Alaux PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States Communication dans un congrès hal-04536526v1
Developing grapevine FAIR Data Cyril Pommier,Eric Duchêne,Thierry Lacombe,Timothée Flutre,Michael Alauxet al. PAG Conference 2018, Jan 2018, San Diego, United States Communication dans un congrès hal-02738117v1
Improving the « FAIRness » of Inra’s data for plant biology and breeding Michael Alaux,Cyril Pommier,Esther Dzale Yeumo,Sophie Durand,Raphaël Floreset al. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.14 slides Communication dans un congrès hal-02790227v1
WheatIS data discovery Michael Alaux PAG XXVII - Plant and Animal Genome Conference, Jan 2019, San Diego, United States Communication dans un congrès hal-04536596v1
BreedWheat GWAS data in GnpIS information system Mathilde Lainé,Thomas Letellier,Raphaël Flores,Nacer Mohellibi,Cyril Pommieret al. Eucarpia Cereal Section - Breeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France Communication dans un congrès hal-02340450v1
The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives Michael Alaux,Jane Rogers,Thomas Letellier,Raphaël Flores,Cyril Pommieret al. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides Communication dans un congrès hal-02788401v1
Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA Sophie Durand,Windpouire Esther Dzale Yeumo,Cyril Pommier,Michael Alaux,Guillaume Cornutet al. 4. International Symposium on Genomics of Plant Genetic Resources, Sep 2017, Giessen, Germany. pp.17 slides Communication dans un congrès hal-02791168v1
The IWGSC Reference genome browser, data mining and beyond Michael Alaux,Thomas Letellier,Françoise Alfama Depauw,Jane Rogers,Frédéric Chouletet al. PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States Communication dans un congrès hal-02788141v1
Making wheat data FAIR Anne-Francoise Adam-Blondon,Michael Alaux e-ROSA Workshop, Wageningen University and Research Centre (WUR). NLD., Jul 2017, Montpellier, France Communication dans un congrès hal-02787766v1
Contribution to a European roadmap for data standardisation in Plant Science at URGI-INRA Cyril Pommier,Michael M. Alaux,Windpouire Esther Dzale Yeumo,Guillaume Cornut,Sophie S. Durandet al. Plant Biology Europe EPSO / FESBP 2016 Congress, Jun 2016, Prague, Czech Republic Communication dans un congrès hal-02794139v1
Sequencing and Analysis of Wheat Chromosome 1B Frédéric Choulet,Hélène Rimbert,Ambre-Aurore Josselin,Benoît Darrier,Pierre Sourdilleet al. Plant and Animal Genome XXIV Conference; IWGSC Standards and Protocoles Workshop, Jan 2016, San Diego, United States Communication dans un congrès hal-02306172v1
IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat Michael Alaux,Thomas Letellier,Françoise Alfama-Depauw,Véronique Jamilloux,Jane Rogerset al. PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States Communication dans un congrès hal-01266518v1
Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpIS.Ephesis and Bii Cyril Pommier,Pawel Krajewski,Thomas Letellier,Hanna Cwiek,Célia Michoteyet al. 23. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States Communication dans un congrès hal-02739236v1
Grape@GnpIS: Overview of the GnpIS grape genomics and genetics integrative resource Nacer Mohellibi,Nathalie Choisne,Aminah A. Keliet,Daphné Verdelet,Françoise Alfamaet al. 23. Plant and Animal Genome (PAG XXIII), Jan 2015, San Diego, United States. pp.24 slides Communication dans un congrès hal-02741780v1
IWGSC sequence repository : how to facilitate pseudomolecule assembly? Michael M. Alaux,Frédéric Choulet,Loïc Couderc,Françoise F. Alfama-Depauw,Véronique Jamillouxet al. PAG XXIII - Plant and Animal Genome Conference, Jan 2015, San Diego, United States Communication dans un congrès hal-02741662v1
A reference sequence of wheat chromosome 3B Frédéric Choulet,Adriana A. Alberti,Sébastien Theil,Natasha Marie Glover,Valérie Barbeet al. 3. Plant Genomics Congress, May 2015, London, United Kingdom Communication dans un congrès hal-02740971v1
IWGSC Sequence repository at URGI: New features and blast tool Michael Alaux,Françoise Alfama Depauw,Loïc Couderc,Véronique Jamilloux,Claire Guercheet al. PAG XXII - Plant and Animal Genome, Jan 2014, San Diego, United States Communication dans un congrès hal-02801480v1
A reference sequence of wheat chromosome 3B Frédéric Choulet,Adriana A. Alberti,Sébastien Theil,Natasha Marie Glover,Valérie Barbeet al. 22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States Communication dans un congrès hal-02742303v1
URGI plant and fungi platform: distributed resources through GMOD tools Joelle J. Amselem,Michael M. Alaux,Nathalie Choisne,Olivier Inizan,Nicolas Lapaluet al. Plant and Animal Genome conference XXII, GMOD session, Jan 2014, San Diego, United States Communication dans un congrès hal-02796293v1
Plant biology open data interoperability in the big data era Anne-Francoise Adam-Blondon,Sophie S. Durand,Erik Kimmel,Raphaël-Gauthier R.-G. Flores,Cyril Pommieret al. Plant Biology Europe EPSO/FEPBS 2014, Jun 2014, Dublin, Germany Communication dans un congrès hal-02801067v1
Information system for phenotype data: trait, trials and genotypes identification and integration Cyril Pommier,Michael M. Alaux,Sophie S. Durand,Raphaël-Gauthier R.-G. Flores,Aminah A. Kelietet al. 22. Conference Plant and Animal Genome, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Jan 2014, San Diego, United States Communication dans un congrès hal-02795958v1
IWGSC Sequence repository : Blast your favorite gene against the wheat survey sequence Michael Alaux,Françoise Alfama-Depauw,Véronique Jamilloux,Raphaël Flores,Daphné Verdeletet al. PAG XXI - Plant and Animal Genome, Jan 2013, San Diego, United States Communication dans un congrès hal-02804578v1
Sequencing and Assembling a Reference Sequence of the 1 Gb Wheat Chromosome 3B Frédéric Choulet,Sébastien Theil,Josquin Daron,Natasha Marie Glover,Nicolas N. Guilhotet al. IWGSC Wheat Genome Sequencing Strategy and Funding Workshop, International Wheat Genome Sequencing Consortium (IWGSC). USA., Apr 2013, Evry, France Communication dans un congrès hal-02747374v1
IWGSC Sequence repository : new data and browsers Michael Alaux,Loïc Couderc,Françoise Alfama Depauw,Véronique Jamilloux,Claire Guercheet al. 12. IWGS (International Wheat Genetics Symposium), Kyoto University [Kyoto] (KU). JPN., Sep 2013, Yokohama, Japan Communication dans un congrès hal-02806070v1
A strategy to assemble a reference sequence of the 1 Gb wheat chromosome 3B Frédéric Choulet,Sébastien Theil,Josquin Daron,Natasha Marie Glover,Nicolas N. Guilhotet al. TGAC/ESF-LESC workshop, Strategies for de novo assemblies of complex crop genomes, Genome Analysis Centre (TGAC). Norwich, GBR., Oct 2012, Norwich, United Kingdom Communication dans un congrès hal-02809032v1
Towards a reference sequence of the 1 Gb wheat chromosome 3B Frédéric Choulet,Sébastien Theil,Adriana A. Alberti,Valérie Barbe,Sophie Mangenotet al. 16. Annual Advances in Genome Biology and Technology (AGBT), Feb 2012, Marco Island, United States Communication dans un congrès hal-02807639v1
URGI genome annotation system:an integrated system for structural and functional genome annotation Joelle J. Amselem,Michael Alaux,Nathalie Choisne,Nicolas Lapalu,Baptiste Braultet al. 12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p Communication dans un congrès hal-01019754v1
Sequencing and analyses of the hexaploid wheat chromosome 3B Frédéric Choulet,Etienne Paux,Philippe Leroy,Arnaud Couloux,Michaël Alauxet al. 10. conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom Communication dans un congrès hal-02753841v1
GnpAnnot community annotation system: features, qualifiers, values Stéphanie Sidibe-Bocs,Fabrice Legeai,Gaëtan Droc,Mathieu Rouard,Michael M. Alauxet al. 3. International Biocuration Conference, Apr 2009, Berlin, Germany Communication dans un congrès hal-02758372v1

Poster de conférence (9)

Preliminary Results from the IWGSC Wheat Diversity Project Joshua C Stein,Catalina Johnson,Victor Llaca,Kevin Fengler,Isabelle Caugantet al. PAG 33, Jan 2026, San Diego, United States Poster de conférence hal-05519131v1
IWGSC 2.0: Wheat Genome Curation for Future Crop Resilience The International Wheat Genome Sequencing Consortium Catalina Johnson,Joshua C Stein,Victor Llaca,Kevin Fengler,Isabelle Caugantet al. PAG32, 2025, San Diego, United States Poster de conférence hal-05519247v1
URGI – A scientific facility dedicated to plant bioinformatics Mariène Wan,Françoise Alfama,Johann Confais,Nicolas Francillonne,Christina Gacicet al. JOBIM 2025, Jul 2025, Bordeaux (France), France Poster de conférence hal-05186831v1
IWGSC 2.0: Implementing the Wheat Diversity Project Joshua C Stein,Victor Llaca,Kevin Fengler,Catalina Johnson,Isabelle Caugantet al. PAG 2024 Australia, Sep 2024, Perth, Australia Poster de conférence hal-04913949v1
Data FAIRification in a cross-institutional governance framework : recommendations from the ANR-BRIDGE project Pascal Aventurier,Michael Alaux,Céline Barthélémy,Pascal Bonnet,Hugo Catherineet al. RDA 19th Plenary meeting, part of International Data Week, Jun 2022, Seoul, South Korea. , 2022, ⟨10.5281/zenodo.6652404⟩ Poster de conférence hal-03758083v1
D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity Sophie Aubin,Anne-Francoise Adam-Blondon,Michael Alaux,Mouhamadou Ba,Stéphan Bernardet al. 14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩ Poster de conférence lirmm-02351000v1
Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA Sophie Durand,Esther Dzale Yeumo,Cyril Pommier,Michaël Alaux,Guillaume Cornutet al. Crop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. , 2017, EUCARPIA Genetic Resources 2017 Poster de conférence hal-01606277v1
BreedWheat genotyping and phenotyping data in GnpIS information system Marie Laine,Thomas Letellier,Raphaël-Gauthier R.-G. Flores,Loïc Couderc,Nacer Mohellibiet al. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. 2015 Poster de conférence hal-02801654v1
Wheat Crop Ontology: A Species Specific Trait Ontology. Use Case: The URGI Information System Cyril Pommier,Michael M. Alaux,Erik Kimmel,Delphine Steinbach,Elizabeth Arnaudet al. Plant and Animal Genome, Jan 2013, San Diego, United States. 2013 Poster de conférence hal-02810186v1

Chapitre d'ouvrage (3)

Wheat Data Integration and FAIRification: IWGSC, GrainGenes, Ensembl and Other Data Repositories Michael Alaux,Sarah Dyer,Taner Z Sen The Wheat Genome, Springer International Publishing, pp.13-25, In press, Compendium of Plant Genomes, ⟨10.1007/978-3-031-38294-9_2⟩ Chapitre d'ouvrage hal-04316553v1
Mining plant genomic and genetic data using the GnpIS information system Anne-Francoise Adam-Blondon,Michael Alaux,Sophie Durand,Thomas Letellier,Guillaume Merceronet al. Aalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩ Chapitre d'ouvrage hal-03206731v1
The Wheat Black Jack : advances towards sequencing the 21 chromosomes of the bread wheat genome Frédéric Choulet,Mario Caccamo,Jon Wright,Michael M. Alaux,Philippe Leroyet al. Genomics of Plant Genetic Resources, Editions Springer, 704 p., 2014, 978-94-007-7571-8. ⟨10.1007/978-94-007-7572-5_17⟩ Chapitre d'ouvrage hal-02797297v1

Autre publication scientifique (1)

Ontology mapping for wheat trait information management Claire Nédellec,Sophie Aubin,Liliana Ibanescu,Clara Sauvion,Sonia Bravoet al. Séminaire résidentiel INRAE Semantic Linked Data, 2023 Autre publication scientifique hal-04420465v1

Pré-publication, Document de travail (1)

AGENT Guidelines for dataflow Anne-Françoise Adam-Blondon,Michael Alaux,Matthijs Brouwer,Paul Kersey,Matthias Langeet al. 2025 Pré-publication, Document de travail hal-04822902v1

Rapport (3)

URGI data management plan Célia Michotey,Michael Alaux,Raphaël Flores,Anne-Françoise Adam-Blondon INRAE. 2024, 22 p Rapport (plan de gestion de données/data management plan) hal-04646807v2
RDF Query interface from BrAPI web service source Cyril Pommier,Guillaume Cornut,Michael Alaux,Windpouire Esther Dzale Yeumo INRAE. 2017, https://rd-alliance.org/sites/default/files/attachment/Creation%20of%20a%20Query%20interface%20for%20phenotyping%20data%20Final%20Report.pdf Rapport hal-04505409v1
Rapport de synthèse du chantier DOI Windpouire Esther Dzale Yeumo,Lydie Soler,Michael M. Alaux,Robert R. Bossy,Sebastien Carrereet al. [0] 2014, 47 p Rapport hal-02801364v1

Logiciel (1)

FAIDARE - FAIR Data-finder for Agronomic REsearch Cyril Pommier,Célia Michotey,Raphaël Flores,Michael Alaux,Guillaume Cornutet al. 2018, ⟨swh:1:dir:23a1de0c4fc2ce7945d06be2edd0086e1f6b0ab8;origin=https://forgemia.inra.fr/urgi-is/data-discovery.git;visit=swh:1:snp:f2b8aaeb16cb22ac2eddbb669cd72ff956e33efd;anchor=swh:1:rev:ccc4e3ae99fb7f063e356919498e8732efc4bfd2⟩ Logiciel hal-04638310v1