Michaël Sdika

Présentation

Publications

Article dans une revue (38)

Fluorescence spectroscopy precorrection model robust to large variability of optical properties: application to point of care quantitative liver graft viability assessment Antoine Uzel,Arthur Gautheron,Olivier Lopez,Guillaume Rossignol,Xavier Mulleret al. Biomedical optics express, 2026, 17 (5), pp.2323. ⟨10.1364/BOE.587424⟩ Article dans une revue hal-05590467v1
Explainable Monotonic Networks and Constrained Learning for Interpretable Classification and Weakly Supervised Anomaly Detection Valentine Wargnier-Dauchelle,Thomas Grenier,Françoise Durand-Dubief,François Cotton,Michaël Sdika Pattern Recognition, 2025, 160, pp.111186. ⟨10.1016/j.patcog.2024.111186⟩ Article dans une revue hal-04776992v2
Comparing Different Methods for the Diagnosis of Liver Steatosis: What Are the Best Diagnostic Tools? Sophie Chopinet,Olivier Lopez,Sophie Brustlein,Antoine Uzel,Anais Moyonet al. Diagnostics, 2024, 14 (20), pp.2292. ⟨10.3390/diagnostics14202292⟩ Article dans une revue hal-04820344v1
A priori free spectral unmixing with periodic absorbance changes: application for auto-calibrated intraoperative functional brain mapping Charly Caredda,Jérémy Cohen,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdikaet al. Biomedical optics express, 2023, 15 (1), pp.387. ⟨10.1364/BOE.491292⟩ Article dans une revue hal-04369614v1
Evaluation of deep learning models for quality control of MR spectra Sana Vaziri,Huawei Liu,Emily Xie,Helene Ratiney,Michaël Sdikaet al. Frontiers in Neuroscience, 2023, 17, ⟨10.3389/fnins.2023.1219343⟩ Article dans une revue hal-04214565v1
A Weakly Supervised Gradient Attribution Constraint for Interpretable Classification and Anomaly Detection Valentine Wargnier-Dauchelle,Thomas Grenier,Françoise Durand-Dubief,François Cotton,Michaël Sdika IEEE Transactions on Medical Imaging, 2023, ⟨10.1109/TMI.2023.3282789⟩ Article dans une revue hal-04110698v2
An explicit Estimated Baseline Model for Robust Estimation of Fluorophores using Multiple-Wavelength Excitation Fluorescence Spectroscopy Arthur Gautheron,M. Sdika,M. Hébert,B. Montcel IEEE Transactions on Biomedical Engineering, 2023, 71 (1), pp.295-306. ⟨10.1109/TBME.2023.3299689⟩ Article dans une revue hal-04188757v1
Intraoperative identification of functional brain areas with RGB imaging using statistical parametric mapping: Simulation and clinical studies Charly Caredda,E. van Reeth,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdikaet al. NeuroImage, 2023, pp.120286. ⟨10.1016/j.neuroimage.2023.120286⟩ Article dans une revue hal-04170059v1
Automatic Segmentation and Location Learning of Neonatal Cerebral Ventricles in 3D Ultrasound Data Combining CNN and CPPN Matthieu Martin,Bruno Sciolla,Michaël Sdika,Philippe Quetin,Philippe Delachartre Computers in Biology and Medicine, 2021, pp.104268. ⟨10.1016/j.compbiomed.2021.104268⟩ Article dans une revue hal-03148181v1
Intraoperative Resting-State Functional Connectivity Based on RGB Imaging Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Fabien Schneideret al. Diagnostics, 2021, 11 (11), pp.2067. ⟨10.3390/diagnostics11112067⟩ Article dans une revue hal-03423345v1
Real Time Intraoperative Functional Brain Mapping Based on RGB Imaging C. Caredda,L. Mahieu-Williame,R. Sablong,M. Sdika,J. Guyotatet al. Innovation and Research in BioMedical engineering, 2020, ⟨10.1016/j.irbm.2020.04.004⟩ Article dans une revue hal-02568247v1
Optimal Spectral Combination of a Hyperspectral Camera for Intraoperative Hemodynamic and Metabolic Brain Mapping Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Jacques Guyotatet al. Applied Sciences, 2020, 10 (15), pp.5158. ⟨10.3390/app10155158⟩ Article dans une revue hal-02908361v1
MRI-based radiomics to predict lipomatous soft tissue tumors malignancy: a pilot study Benjamin Leporq,Amine Bouhamama,Frank Pilleul,Fabrice Lame,Catherine Bihaneet al. Cancer Imaging, 2020, 20 (1), pp.Article number: 78. ⟨10.1186/s40644-020-00354-7⟩ Article dans une revue hal-03107185v1
Corrigendum to “Automatic myocardial ischemic lesion detection on magnetic resonance perfusion weighted imaging prior perfusion quantification: A pre-modeling strategy” [Comput. Biol. Med. 110 (2019) 108–119] Clément Daviller,Thomas Grenier,Hélène Ratiney,Michaël Sdika,Pierre Croisilleet al. Computers in Biology and Medicine, 2019, 114, pp.103455. ⟨10.1016/j.compbiomed.2019.103455⟩ Article dans une revue istex hal-03009072v1
Diffeomorphic B-Spline Vector Fields With a Tractable Set of Inequalities Michaël Sdika Mathematics of Computation, 2019, 88 (320), pp.2827--2856. ⟨10.1090/mcom/3419⟩ Article dans une revue hal-01956237v1
Automatic myocardial ischemic lesion detection on magnetic resonance perfusion weighted imaging prior perfusion quantification: A pre-modeling strategy Clément Daviller,Thomas Grenier,Hélène Ratiney,Michaël Sdika,Pierre Croisilleet al. Computers in Biology and Medicine, 2019, 110, pp.108-119. ⟨10.1016/j.compbiomed.2019.05.001⟩ Article dans une revue hal-02135018v1
Intraoperative quantitative functional brain mapping using an RGB camera Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Laure Alstonet al. Neurophotonics, 2019, 6 (04), pp.1. ⟨10.1117/1.NPh.6.4.045015⟩ Article dans une revue hal-02425832v1
Repetitive Motion Compensation for Real Time Intraoperative Video Processing Michaël Sdika,Laure Alston,David Rousseau,Jacques Guyotat,Laurent Mahieu-Williameet al. Medical Image Analysis, 2019, 53, pp.1-10. ⟨10.1016/j.media.2018.12.005⟩ Article dans une revue hal-01974104v2
Removing Segmentation Inconsistencies with Semi-Supervised Non-Adjacency Constraint Pierre-Antoine Ganaye,Michaël Sdika,Bill Triggs,Hugues Benoit-Cattin Medical Image Analysis, 2019, 58, pp.101551. ⟨10.1016/j.media.2019.101551⟩ Article dans une revue hal-02275956v1
Automatic spinal cord localization, robust to MRI contrasts using global curve optimization Charley Gros,Benjamin de Leener,Sara Dupont,Allan Martin,Michael Fehlingset al. Medical Image Analysis, 2018, 44, pp.215-227. ⟨10.1016/j.media.2017.12.001⟩ Article dans une revue hal-01690881v1
Reproducibility of in vivo magnetic resonance imaging T 1 rho and T 2 relaxation time measurements of hip cartilage at 3.0T in healthy volunteers Angeline Nemeth,Lucy Di Marco,Florent Boutitie,Michael Sdika,Denis Grenieret al. Journal of Magnetic Resonance Imaging, 2017, 47 (4), pp.1022-1033. ⟨10.1002/jmri.25799⟩ Article dans une revue hal-01560104v1
Multi-atlas-based fully automatic segmentation of individual muscles in rat leg Michaël Sdika,Anne Tonson,Yann Le Fur,Patrick J Cozzone,David Bendahan Magnetic Resonance Materials in Physics, Biology and Medicine, 2016, 29 (2), pp.223-235. ⟨10.1007/s10334-015-0511-6⟩ Article dans une revue hal-01375862v1
A reliable spatially normalized template of the human spinal cord - Applications to automated white matter/gray matter segmentation and tensor-based morphometry (TBM) mapping of gray matter alterations occurring with age Manuel Taso,Arnaud Le Troter,Michaël Sdika,Julien Cohen-Adad,Pierre-Jean Arnouxet al. NeuroImage, 2015, 117, p.20-28. ⟨10.1016/j.neuroimage.2015.05.034⟩ Article dans une revue istex hal-01414352v1
misoSR: Medical Image Isotropic Super-Resolution Reconstruction Eric van Reeth van Reeth,Geetha Soujanya,Michaël Sdika,Frederic Cervenansky,Chueh Loo Poh Midas Journal, 2015 Article dans une revue hal-01799683v1
Enhancing atlas based segmentation with multiclass linear classifiers Michaël Sdika Medical Physics : The international journal of medical physics research and practice, 2015, 42, pp.7169. ⟨10.1118/1.4935946⟩ Article dans une revue hal-01375850v1
Framework for integrated MRI average of the spinal cord white and gray matter: The MNI–Poly–AMU template V.S. Fonov,A. Le Troter,M. Taso,B. de Leener,Gaëtan Lévêqueet al. NeuroImage, 2014, 102 (Pt2), pp.817-827. ⟨10.1016/j.neuroimage.2014.08.057⟩ Article dans une revue hal-01117512v1
Fast multidimensional NMR spectroscopy for sparse spectra D. Merhej,H. Ratiney,C. Diab,M. Khalil,Michaël Sdikaet al. NMR in Biomedicine, 2014, 27 (6), pp.640-655. ⟨10.1002/nbm.3100⟩ Article dans une revue istex hal-00977517v1
Construction of an in vivo human spinal cord atlas based on high-resolution MR images at cervical and thoracic levels: preliminary results M Taso,A Le Troter,M Sdika,Jean-Philippe Ranjeva,M Guyeet al. Magnetic Resonance Materials in Physics, Biology and Medicine, 2013, 27, pp.257-267 Article dans une revue hal-01097040v1
A Sharp Sufficient Condition for B-Spline Vector Field Invertibility. Application to Diffeomorphic Registration and Interslice Interpolation. Michaël Sdika SIAM Journal on Imaging Sciences, 2013, 6 (4), pp.2236-2257. ⟨10.1137/120879920⟩ Article dans une revue hal-01902498v1
A genome-wide association study of brain lesion distribution in multiple sclerosis. P.A. Gourraud,Michaël Sdika,P. Khankhanian,R.G. Henry,A. Beheshtianet al. Brain - A Journal of Neurology , 2013, 136, pp.1012-24. ⟨10.1093/brain/aws363⟩ Article dans une revue hal-01902499v1
Bootstrap quantification of cardiac pulsation artifact in DTI S. Chung,B. Courcot,Michaël Sdika,K. Moffat,C. Raeet al. NeuroImage, 2010, 49 (1), pp.631-40 Article dans une revue hal-00617749v1
Combining atlas based segmentation and intensity classification with nearest neighbor transform and accuracy weighted vote Michaël Sdika Medical Image Analysis, 2010, 14 (2), pp.219-26. ⟨10.1016/j.media.2009.12.004⟩ Article dans une revue hal-00617791v1
Nonrigid registration of multiple sclerosis brain images using lesion inpainting for morphometry or lesion mapping. Michaël Sdika,Daniel Pelletier Human Brain Mapping, 2009, 30, pp.1060-7. ⟨10.1002/hbm.20566⟩ Article dans une revue istex hal-01902507v1
Whole brain voxel-wise analysis of single-subject serial DTI by permutation testing. S. Chung,D. Pelletier,Michaël Sdika,Y. Lu,I. Bermanet al. NeuroImage, 2008, 39, pp.1693-705. ⟨10.1016/j.neuroimage.2007.10.039⟩ Article dans une revue hal-01902508v1
A Fast Nonrigid Image Registration With Constraints on the Jacobian Using Large Scale Constrained Optimization Michaël Sdika IEEE Transactions on Medical Imaging, 2008, 27 (2), pp.271-281. ⟨10.1109/TMI.2007.905820⟩ Article dans une revue hal-02073305v1
Estimation of metabolite T1 relaxation times using tissue specific analysis, signal averaging and bootstrapping from magnetic resonance spectroscopic imaging data H. Ratiney,S. M. Noworolski,Michaël Sdika,R. Srinivasan,R. G. Henryet al. Magn Reson Mater Phy Biol Med, 2007, 20 (3), pp.143-155 Article dans une revue hal-00443421v1
Boundary conditions for Young - van Vliet recursive filtering Bill Triggs,Michaël Sdika IEEE Transactions on Signal Processing, 2006, 54 (6), pp.2365 - 2367. ⟨10.1109/TSP.2006.871980⟩ Article dans une revue inria-00548616v1
Time-Domain Semi-Parametric Estimation Based on a Metabolite Basis Set H. Ratiney,Michaël Sdika,Y. Coenradie,S. Cavassila,D. van Ormondtet al. Nuclear Magnetic Resonance in Biomedicine, 2005, 18, pp.1-13 Article dans une revue hal-00443422v1

Communication dans un congrès (73)

Joint reconstruction and pansharpening for high-resolution hyperspectral single-pixel imaging Thomas Maitre,Elie Bretin,Nicolas Ducros,Michaël Sdika International Conference on Acoustics, Speech, and Signal Processing, May 2026, Barcelona, Spain Communication dans un congrès hal-05298892v2
Towards Better Interpretability of Sepsis Prediction by Deep Neural Networks with Variable-wise Attribution Maps P.-E Thiboud,V Wargnier-Dauchelle,M Lefort,N Duchateau,M Sdika 2025 IEEE International Symposium on Biomedical Imaging (ISBI), Apr 2025, Houston (Texas), United States Communication dans un congrès hal-04776927v3
Liver Steatosis Evaluation in Transplantation: Near-Infrared Diffuse reflectance Spectroscopy Antoine Uzel,Michaël Sdika,Olivier Lopez,Sophie Chopinet,Pauline Brigeet al. European Conference on Biomedical Optics, Jun 2025, München, France. pp.M4B.1, ⟨10.1364/ECBO.2025.M4B.1⟩ Communication dans un congrès hal-05423810v1
Automated registration of intraoperative optical images with preoperative MRI Charly Caredda,Eric Van-Reeth,Fernand Fort,Michaël Sdika,Thiébaud Picartet al. European Conference on Biomedical Optics, Jun 2025, Munich, Germany. pp.M3A.15, ⟨10.1364/ECBO.2025.M3A.15⟩ Communication dans un congrès hal-05385068v1
Vers une meilleure interprétabilité des réseaux de neurones pour la prédiction du sepsis via des cartes d'attribution variable par variable Pierre-Elliott Thiboud,Valentine Wargnier-Dauchelle,Mathieu Lefort,Nicolas Duchateau,Michaël Sdika Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM), Mar 2025, Nice, France Communication dans un congrès hal-04971677v1
Intraoperative Glioma Delineation with robust estimation of 5-ALA-Induced PpIX Contributions in Multiple-Wavelength Excitation Fluorescence Spectroscopy : Application on Clinical data Arthur Gautheron,M. Sdika,J. Guyotat,A. Uzel,D. Meyronetet al. European Conference on Biomedical Optics, 2025, München, France. pp.Th4A.5, ⟨10.1364/ECBO.2025.Th4A.5⟩ Communication dans un congrès hal-05269500v1
Optical Properties Corrected Fluorescence Spectroscopy for Liver Graft Viability Monitoring Antoine Uzel,M. Sdika,Guillaume Rossignol,Xavier Muller,N. Boulangeret al. European Conference on Biomedical Optics, Jun 2025, München, France. pp.Tu1A.6, ⟨10.1364/ECBO.2025.Tu1A.6⟩ Communication dans un congrès hal-05423811v1
Application on Clinical Data of Robust Estimation of PpIX in Multispectral Excited Fluorescence Spectroscopy Arthur Gautheron,Michaël Sdika,J. Guyotat,antoine uzel,David Meyronetet al. RITS 2024, Jun 2024, Clermond - Ferrand, France Communication dans un congrès hal-04617157v1
Near infrared diffuse reflectance spectroscopy for fat quantification in fatty liver disease Antoine Uzel,Michaël Sdika,Sophie Chopinet,Olivier Lopez,Bruno Montcel Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XXII, Jan 2024, San-Francisco, United States. pp.29, ⟨10.1117/12.3001895⟩ Communication dans un congrès hal-04628102v1
Dynamic Single-Pixel Imaging on an Extended Field of View without Warping the Patterns Thomas Maitre,Elie Bretin,Romain Phan,Nicolas Ducros,Michaël Sdika International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2024, Marrakech, Morocco. pp 275-284, ⟨10.1007/978-3-031-72104-5_27⟩ Communication dans un congrès hal-04533981v2
Near infrared diffuse reflectance spectroscopy quantification in fatty liver disease Antoine Uzel,Olivier Lopez,Sophie Chopinet,Michaël Sdika,Bruno Montcel Tissue Optics and Photonics III, Apr 2024, Strasbourg, France. pp.8, ⟨10.1117/12.3017175⟩ Communication dans un congrès hal-04628154v1
Hybrid single-pixel camera for dynamic hyperspectral imaging Thomas Maitre,Elie Bretin,Laurent Mahieu-Williame,Michaël Sdika,Nicolas Ducros 2024 IEEE International Symposium on Biomedical Imaging (ISBI), May 2024, Athens, France. pp.1-5, ⟨10.1109/ISBI56570.2024.10635884⟩ Communication dans un congrès hal-04310110v2
The Impact of Hardware Variability on Applications Packaged with Docker and Guix: a Case Study in Neuroimaging Gaël Vila,Emmanuel Medernach,Inés Gonzalez,Axel Bonnet,Yohan Chatelainet al. ACM REP'24, ACM, Jun 2024, Rennes, France. pp.75-84, ⟨10.1145/3641525.3663626⟩ Communication dans un congrès hal-04480308v2
An unexpected confounder: how brain shape can be used to classify MRI scans ? Valentine Wargnier-Dauchelle,Thomas Grenier,Michaël Sdika Medical Imaging with Deep Learning, Jul 2024, Paris, France Communication dans un congrès hal-04561863v1
Evaluation of liver viability for transplantation by fluorescence spectroscopy Antoine Uzel,Olivier Lopez,Arthur Gautheron,Guillaume Rossignol,Xavier Mulleret al. Photonics Europe 2024, Apr 2024, Strasbourg, France. pp.PC130090F, ⟨10.1117/12.3017172⟩ Communication dans un congrès hal-04617068v1
Quantification de graisse pour la stéatose hépatique par spectroscopie proche infrarouge en réflectance diffuse A Uzel,Olivier Lopez,S Chopinet,M Sdika,B Montcel Recherche en Imagerie et Technologies pour la Santé 2024, Jun 2024, Aubière, France Communication dans un congrès hal-04628297v1
Robust estimation of 5-ALA-induced PpIX contributions in multiple-wavelength excitation fluorescence spectroscopy to improve intraoperative glioma detection: application on clinical data Arthur Gautheron,Michaël Sdika,Jacques Guyotat,Antoine Uzel,David Meyronetet al. Photonics Europe 2024, Apr 2024, Strasbourg, France. pp.1300908, ⟨10.1117/12.3022093⟩ Communication dans un congrès hal-04617079v1
HyperProbe consortium: innovate tumour neurosurgery with innovative photonic solutions Charly Caredda,Luca Giannoni,Frédéric Lange,Ivan Ezhov,Adithep Kawinkijet al. SFNR 2024, Société Française de Neuroradiologie, Mar 2024, Paris, France Communication dans un congrès hal-04959009v1
Pixel-wise and real-time estimation of optical mean path length using deep learning: application for intraoperative functional brain mapping Charly Caredda,Ivan Ezhov,Michaël Sdika,Frédéric Lange,Luca Giannoniet al. Clinical Biophotonics III, Apr 2024, Strasbourg, France. pp.35, ⟨10.1117/12.3016632⟩ Communication dans un congrès hal-04661800v1
Constrained non-negative networks for a more explainable and interpretable classification Valentine Wargnier-Dauchelle,Thomas Grenier,Françoise Durand-Dubief,François Cotton,Michaël Sdika Medical Imaging with Deep Learning, Jul 2024, Paris, France Communication dans un congrès hal-04561860v1
Near infrared diffuse reflectance spectroscopy for fat quantification in non-alcoholic fatty liver disease Antoine Uzel,Michaël Sdika,Sophie Chopinet,Olivier Lopez,Bruno Montcel Diffuse Optical Spectroscopy and Imaging, Jun 2023, Munich, Germany. pp.60, ⟨10.1117/12.2669268⟩ Communication dans un congrès hal-04279251v1
Robust Unsupervised Image to Template Registration Without Image Similarity Loss Slim Hachicha,Célia Le,Valentine Wargnier-Dauchelle,Michaël Sdika Medical Image Learning with Limited and Noisy Data, Second International Workshop, MILLanD 2023, Held in Conjunction with MICCAI 2023, Vancouver, Proceedings, Oct 2023, Vancouver, Canada Communication dans un congrès hal-04183379v1
Separable spectral unmixing based on the learning of periodic absorbance changes: application to functional brain mapping using RGB imaging C. Caredda,Jérémy Cohen,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdikaet al. European Conferences on Biomedical Optics, 2023, Munich, Germany, SPIE, Jun 2023, Munchen, Germany. pp.44, ⟨10.1117/12.2670506⟩ Communication dans un congrès hal-04181635v1
Reproducibility of Tumor Segmentation Outcomes with a Deep Learning Model Morgane Des Ligneris,Axel Bonnet,Yohan Chatelain,Tristan Glatard,Michaël Sdikaet al. International Symposium on Biomedical Imaging (ISBI), Apr 2023, Cartagena de Indias, Colombia. ⟨10.1109/ISBI53787.2023.10230482⟩ Communication dans un congrès hal-04006057v1
Comparison of intraoperative functional brain maps obtained with RGB imaging with preoperative functional magnetic resonance Imaging maps: a task-based and resting-state study Charly Caredda,Anne Josset,Eric van Reeth van Reeth,Laurent Mahieu-Williame,Raphaël Sablonget al. Clinical Biophotonics II, Apr 2022, Strasbourg, France. pp.14, ⟨10.1117/12.2621507⟩ Communication dans un congrès hal-03687220v1
Design of brain simulating liquid and numeric phantoms for evaluating hemodynamic changes in intraoperative functional brain mapping studies Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Jacques Guyotatet al. Clinical Biophotonics II, Apr 2022, Strasbourg, France. pp.37, ⟨10.1117/12.2621235⟩ Communication dans un congrès hal-03687207v1
Intraoperative optical imaging for neurosurgery guidance Charly Caredda,Laure Alston,Arthur Gautheron,L. Mahieu-Williame,Bruno Montcelet al. Journées de la Recherche en Imagerie et Technologies pour la Santé (RITS ) 2022, May 2022, Brest, France Communication dans un congrès hal-03700652v1
Robust Estimation of 5-ALA Induced PpIX Multiple-Wavelength Excitation Fluorescence Spectroscopy for Improving Glioma Classification Arthur Gautheron,Michaël Sdika,Mathieu Hébert,Bruno Montcel SPIE Photonics Europe, Clinical Biophotonics II ; SPIE proceedings, Apr 2022, Strasbourg, France. pp.1214607, ⟨10.1117/12.2620945⟩ Communication dans un congrès hal-03665499v1
Estimation of Fluorescence Contributions using Multiple-Wavelength Excitation: the example of PpIX for improving Glioma Classification Arthur Gautheron,Michael Sdika,Mathieu Hébert,Bruno Montcel Journées Imagerie Optique Non Conventionnelle (JIONC), Mar 2022, Paris, France Communication dans un congrès hal-03597733v1
Un Classifieur plus Interprétable pour la SEP Valentine Wargnier-Dauchelle,Thomas Grenier,Françoise Durand-Dubief,François Cotton,Michaël Sdika Congrès Société Française de Résonance Magnétique en Biologie et Médecine (SFRMBM), Sep 2021, Lyon, France Communication dans un congrès hal-03212961v1
Intraoperative Statistical Parametric Brain Mapping using RGB Imaging Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Jacques Guyotatet al. European Conferences on Biomedical Optics, Jun 2021, Munchen, Germany Communication dans un congrès hal-03261989v1
Application of Deep Leaning Model for Quality Control of Short-echo 7T MRSI with Various Disease Types Huawei Liu,Emilie Xie,H. Ratiney,Michaël Sdika,Yan Li 2021 ISMRM & SMRT Annual Meeting, May 2021, virtual Vancouver, Canada Communication dans un congrès hal-03519714v1
Intraoperative Resting State Functional Connectivity Based on RGB Imaging Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Fabien C Schneideret al. European Conferences on Biomedical Optics, Jun 2021, Munchen (virtual), Germany Communication dans un congrès hal-03262003v1
Optimal Spectral Combination of a Hyperspectral Camera for Intraoperative Hemodynamic and Metabolic Brain Mapping Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Jacques Guyotatet al. European Conferences on Biomedical Optics, Jun 2021, Munchen (virtual), Germany Communication dans un congrès hal-03262012v1
A More Interpretable Classifier for Multiple Sclerosis Valentine Wargnier-Dauchelle,Thomas Grenier,Françoise Durand-Dubief,François Cotton,Michaël Sdika International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice, France. ⟨10.1109/ISBI48211.2021.9434074⟩ Communication dans un congrès hal-03212945v1
Intraoperative functional and metabolic brain mapping using hyperspectral imaging Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Jacques Guyotatet al. Photonic west, Feb 2020, San Francisco, United States. pp.11, ⟨10.1117/12.2545968⟩ Communication dans un congrès hal-02539551v1
MR SPECTROSCOPY ARTIFACT REMOVAL WITH U-NET CONVOLUTIONAL NEURAL NETWORK Nima Hatami,Hélène Ratiney,Michaël Sdika 27th Annual meeting of the ISMRM, May 2019, Montreal, Canada Communication dans un congrès hal-02129946v1
MRI-based radiomic to predict lipomatous soft tissue tumors malignancy Benjamin Leporq,Amine Bouhamama,Fabrice Lame,Catherine Bihane,Michaël Sdikaet al. 27th Annual meeting of the ISMRM, May 2019, Montréal, Canada Communication dans un congrès hal-02266792v1
Pixel-wise modied Beer-Lambert model for intraoperative functional brain mapping Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Bruno Montcel European Conferences on Biomedical Optics, Jun 2019, Munich, Germany Communication dans un congrès hal-02142540v1
Real time intraoperative functional brain mapping using a RGB camera Charly Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Jacques Guyotatet al. European Conferences on Biomedical Optics, Jun 2019, Munich, Germany Communication dans un congrès hal-02142519v1
Segmentation of neonates cerebral ventricles with 2D CNN in 3D US data: suitable training-set size and data augmentation strategies Matthieu Martin,Bruno Sciolla,Michaël Sdika,Philippe Quetin,Philippe Delachartre 2019 IEEE International Ultrasonics Symposium (IUS), Oct 2019, Glasgow, United Kingdom. pp.2122-2125, ⟨10.1109/ULTSYM.2019.8925799⟩ Communication dans un congrès hal-03148378v1
Magnetic Resonance Spectroscopy Quantification using Deep Learning Nima Hatami,Michaël Sdika,Hélène Ratiney MICCAI, Oct 2018, Grenada, Spain Communication dans un congrès hal-01904617v1
Neuroimagerie fonctionnelle multispectrale C. Caredda,L. Mahieu-Williame,R Sablong,Michaël Sdika,L.M. Alstonet al. OPTDIAG, 2018, Paris, Unknown Region Communication dans un congrès hal-01902495v1
Towards Integrating Spatial Localization in Convolutional Neural Networks for Brain Image Segmentation Pierre-Antoine Ganaye,Michael Sdika,Hugues Benoit-Cattin 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), Apr 2018, Washington, United States. ⟨10.1109/ISBI.2018.8363652⟩ Communication dans un congrès hal-01812045v1
Towards handling artefacts in Convolutional Neural Networks-based MRS quantification Nima Hatami,Michaël Sdika,Hélène Ratiney ISMRM MRS Workshop, Oct 2018, Utrecht, Netherlands Communication dans un congrès hal-01904680v1
MRI-based radiomic to assess lipomatous soft tissue tumors malignancy: a pilot study Benjamin Leporq,Amine Bouhamama,Fabrice Lame,Catherine Bihane,Michael Sdikaet al. International Society of Magnetic Resonance in Medicine and European Society of Magnetic Resonance in Medicine and Biology joint Annual Meeting, Jun 2018, Paris, France Communication dans un congrès hal-01921659v1
Semi-supervised learning for segmentation under semantic constraint Pierre-Antoine Ganaye,Michaël Sdika,Hugues Benoit-Cattin MICCAI, Sep 2018, Grenada, Spain Communication dans un congrès hal-01904641v1
Automatic Segmentation of the Cerebral Ventricle in Neonates Using Deep Learning with 3D Reconstructed Freehand Ultrasound Imaging Matthieu Martin,Bruno Sciolla,Michaël Sdika,Xiaoyu Wang,Philippe Quétinet al. 2018 IEEE International Ultrasonics Symposium (IUS), Oct 2018, Kobe, Japan. pp.1-4, ⟨10.1109/ULTSYM.2018.8580214⟩ Communication dans un congrès hal-02043054v1
Automatic Detection of the Spinal Cord Centerline using Machine Learning and Global Nonlinear Optimization Michaël Sdika,V. Callot Recherche en Imagerie et Technologies pour la Santé - RITS 2017, Mar 2017, Lyon, France Communication dans un congrès hal-01721389v1
3D MRI Segmentation of muscle through 2D multi-label propagation at 7T Augustin C. Ogier,Alexandre Fouré,Michaël Sdika,Arnaud Le Troter,Bendahan David 34th Annual Scientific Meeting of the European Society of Magnetic Resonance in Medicine and Biology, European Society of Magnetic Resonance in Medicine and Biology, Oct 2017, Barcelone, Spain Communication dans un congrès hal-04077604v1
OptiC: Robust and Automatic Spinal Cord Localization on a Large Variety of MRI Data Using a Distance Transform Based Global Optimization Charley Gros,Benjamin de Leener,Sara Dupont,Allan R. Martin,Michael G. Fehlingset al. Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017, Sep 2017, Québec, Canada. pp.712-719, ⟨10.1007/978-3-319-66185-8_80⟩ Communication dans un congrès hal-01713965v1
Robust real time motion compensation for intraoperative video processing during neurosurgery Michaël Sdika,Laure Alston,Laurent Mahieu-Williame,Jacques Guyotat,David Rousseauet al. IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016), Apr 2016, Prague, Czech Republic. ⟨10.1109/ISBI.2016.7493445⟩ Communication dans un congrès hal-01451713v1
Improving the spatial resolution and SNR of rat brain T2-weighted MR images: application of a super-resolution method E. van Reeth van Reeth,Michaël Sdika,S. Gaillard,P.-H. Luppi,P.-A. Libourelet al. ISMRM 23rd Annual Meeting & Exhibition, May 2015, Toronto, Canada Communication dans un congrès hal-01288505v1
Multiple labels point-set registration E. van Reeth van Reeth,M Sdika,P.-H. Luppi,P.-A. Libourel,O. Beuf 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), Apr 2015, New-York, United States. pp.609 - 612, ⟨10.1109/ISBI.2015.7163947⟩ Communication dans un congrès hal-01272177v1
Amélioration de résolution spatiale et SNR d’images cérébrales pondérées T2 de rat : application de la super-résolution Eric van Reeth van Reeth,Michaël Sdika,Sophie Gaillard,Pierre-Hervé Luppi,Paul-Antoine Libourelet al. 2ème Congrès de la SFRMBM, Mar 2015, Grenoble, France Communication dans un congrès hal-01288527v1
MNI-Poly-AMU Average Anatomical Template for Automatic Spinal Cord Measurements V.S. Fonov,A. Le Troter,M. Taso,Gaëtan Lévêque,M. Benhamouet al. ISMRM-ESMRMB Annual Meeting 2014, May 2014, Milan, Italy Communication dans un congrès hal-01117634v1
Atlas of White-Matter Tracts in the Human Spinal Cord M. Benhamou,V.S. Fonov,M. Taso,A. Le Troter,Michaël Sdikaet al. ISMRM-ESMRMB Annual Meeting 2014, May 2014, Milan, Italy Communication dans un congrès hal-01117699v1
Validation of a 2D Spinal Cord Probabilistic Atlas. Application to FA Measurement and VBM Study of the GM Atrophy Occurring with Age M. Taso,A. Le Troter,Michaël Sdika,V.S. Fonov,J. Cohen-Adadet al. ISMRM-ESMRMB Annual Meeting 2014, May 2014, Milan, France Communication dans un congrès hal-01117689v1
Démonstrateur en imagerie à vocation diagnostique dans le cadre de l'AVC C. Frindel,H. Rositi,Michaël Sdika,F. Chauveau,T.-H. Choet al. 4èmes Journées Démonstrateurs 2013, Jun 2013, Angers, France Communication dans un congrès hal-00849981v1
Liver perfusion quantification with MR-DCE imaging at 3.0 T for liver fibrosis assessment in patients with chronic liver diseases Benjamin Leporq,Franck Pilleul,Jérôme Dumortier,Olivier Guillaud,Thibaud Lefortet al. ISMRM 21st Annual Meeting & Exhibition, Apr 2013, Salt-Lake City, United States. pp.3911 Communication dans un congrès hal-01128036v1
Towards a biochemical and structure specific quantitative analysis of the mouse brain using Magnetic Resonance Spectroscopic Imaging at 11.7T H. Ratiney,Michaël Sdika,O. Beuf,Y. Le Fur,S. Cavassila Journées Thématiques GDR "Imagerie in vivo" (IMAGIV), 2011, Paris, Unknown Region Communication dans un congrès hal-01879479v1
Optimal Recombination of Multi-Coils CSI Data using Image Based Sensitivity Map Michaël Sdika,Y. Le Fur,P. . Cozzone 20th Annual meeting of the ISMRM, 2011, Montreal, Canada. pp.3478 Communication dans un congrès hal-01902502v1
Vascular Alterations and Recruitment in Spinal Cord Injury Revealed by Multislice Arterial Spin Labeling (ASL) Perfusion Imaging Guillaume Duhamel,Tanguy Marqueste,Michaël Sdika,M. Tachrount,P. Decherchiet al. ISMRM-ESMRMB Joint Annual Meeting, 2011, Stockholm, Sweden. pp.5092 Communication dans un congrès hal-01902500v1
Multi Atlas Segmentation of Rat Leg Muscles Michaël Sdika,A. Tonson,P. . Cozzone,D. Bendahan 20th Annual meeting of the ISMRM, 2011, Montreal, Canada. pp.2562 Communication dans un congrès hal-01902503v1
Short Echo Time H1 Chemical Shift Imaging data quantification in the mouse brain at 11.7T using a constrained parametric macromolecular model H. Ratiney,Y. Le Fur,Michaël Sdika,S. Cavassila ISMRM-ESMRMB Joint Annual Meeting, 2010, Stockholm, Sweden Communication dans un congrès hal-01879492v1
Segmentation of the Structure of the Mouse Spinal Cord on DTI images Michaël Sdika,V. Callot,M Hebert,Guillaume Duhamel,P.J. Cozzone ISMRM-ESMRMB Joint Annual Meeting, 2010, Stockholm, Sweden. pp.5115 Communication dans un congrès hal-01902504v1
A Fully Automated White Matter/Gray Matter Segmentation of Mice Spinal Cord on DTI Images Michaël Sdika,V. Callot,M Hebert,Guillaume Duhamel,P.J. Cozzone ISMRM-ESMRMB Joint Annual Meeting, 2010, Stockholm, Sweden. pp.442 Communication dans un congrès hal-01902505v1
Towards structure specific macromolecular content of mouse brain from Chemical Shift Imaging data at 11.7T H. Ratiney,Michaël Sdika,O. Beuf,Y. Le Fur,S. Cavassila ISMRM, 2009, Hawai, United States. pp.3293 Communication dans un congrès hal-01879496v1
Quantitative assessment of the brain macromolecular content in a mouse model of neuro-inflammation from chemical shift imaging data at 11.7T H. Ratiney,Y. Le Fur,Michaël Sdika,M. Touret,A. Bernardet al. ESMRMB, 2009, Antalya, Turkey. pp.39 Communication dans un congrès hal-01879500v1
Effective Voigt model estimation using multiple random starting values and parameter bounds settings for in vivo hepatic 1H Magnetic Resonance Spectroscopy data H. Ratiney,A. Bucur,Michaël Sdika,O. Beuf,F. Pilleulet al. IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, Paris, France. pp.1529-1532, ⟨10.1109/ISBI.2008.4541300⟩ Communication dans un congrès hal-01879508v1
Regional Estimation of T1 Metabolite Relaxation using 2D MRSI and a Bootstrap Approach at 1.5T H. Ratiney,S.M. Noworolski,Michaël Sdika,R. Srinivasan,R.G. Henryet al. Int. Soc. Magnetic Resonance in Medicine, 14th Scientific Meeting and Exhibition, 2006, Seattle, Washington, USA, Unknown Region Communication dans un congrès hal-01879435v1
Semi-Parametric estimation in In vivo MR Spectroscopy H. Ratiney,E. Capobianco,Michaël Sdika,H. Rabeson,C. Cudalbuet al. ProRISC, IEEE Benelux, 2005, Veldhoven, The, Netherlands. pp.658-667 Communication dans un congrès hal-01879442v1
PhotoMole: retrieval from a database of natural images Matthijs Douze,Michaël Sdika,Cordelia Schmid CVPR'05 - IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Jun 2005, San Diego, United States. pp.1-4 Communication dans un congrès hal-01902510v1

Poster de conférence (25)

Liver Steatosis Assesment for Transplantation : Vitamin A Fluorescence and Near-Infrared Spectroscopy Antoine Uzel,Michaël Sdika,Pauline Brige,Sophie Chopinet,Arthur Gautheronet al. ESOT 2025, Jun 2025, Londres, United Kingdom Poster de conférence hal-05424000v1
Assessment of Liver Graft Viability through Fluorescence-Based Cellular Function Monitoring Antoine Uzel,M. Sdika,G. Rossignol,X. Muller,N. Boulangeret al. WTC 2025, Aug 2025, San Francisco, United States. American Journal of Transplantation, 25 (8), pp.S570, 2025, ⟨10.1016/j.ajt.2025.07.1330⟩ Poster de conférence hal-05423794v1
A-priori Free Spectral Unmixing based on Tensor Low-rank Decomposition for Intraoperative Hyperspectral Functional Imaging Charly Caredda,Jérémy E Cohen,Michaël Sdika,Jacques Guyotat,Thiébaud Picartet al. ISOTT 2025, Aug 2025, Thessaloniki, Greece Poster de conférence hal-05434416v1
Monitoring Liver Viability: Fluorescence Spectroscopy of Cellular Metabolites in Ischemia-Reperfusion Antoine Uzel,Olivier Lopez,Arthur Gautheron,Guillaume Rossignol,Xavier Mulleret al. ESOT 2025, Jun 2025, Londres, United Kingdom Poster de conférence hal-05423970v1
Domain adaptation for MRS deep learning quantification methods Slim Hachicha,Michaël Sdika,Hélène Ratiney ESMRMB 2025, Oct 2025, Marseille, France Poster de conférence hal-05313762v1
Combining NIR Spectroscopy and Fluorescence for Liver Steatosis Assessment Antoine Uzel,M. Sdika,Olivier Lopez,Sophie Chopinet,Pauline Brigeet al. WTC 2025, Aug 2025, San Francisco, United States. American Journal of Transplantation, 25 (8), pp.S747, 2025, ⟨10.1016/j.ajt.2025.07.1763⟩ Poster de conférence hal-05423804v1
Latent space separation for tissue characterization in ultrasound images using deep learning Nicolas Moyne,Michaël Sdika,Pauline Muleki Seya,Valentine Wargnier-Dauchelle International Ultrasonic Symposium, Sep 2025, Utrecht, Netherlands Poster de conférence hal-05495349v1
Automated registration of intraoperative optical images with preoperative MRI Charly Caredda,Eric Van-Reeth,Fernand Fort,Michaël Sdika,Thiébaud Picartet al. SFRMBM 2025, Mar 2025, Saint-Malo, France Poster de conférence hal-05434396v1
Robust Unsupervised Image to Template Registration Without Image Similarity Loss Slim Hachicha,Célia Le,Valentine Wargnier-Dauchelle,Michaël Sdika Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, IABM, Feb 2024, Grenoble, France Poster de conférence hal-04531824v1
Quantification de graisse pour la stéatose hépatique par spectroscopie proche infrarouge en réflectance diffuse Antoine Uzel,Michaël Sdika,Sophie Chopinet,Olivier Lopez,Bruno Montcel RITS 2024, Jun 2024, Aubières, France Poster de conférence hal-05442274v1
HyperProbe: Transforming brain surgery by advancing functional-guided neuronavigational imaging Charly Caredda,Luca Giannoni,Frédéric Lange,Ivan Ezhov,Adithep Kawinkijet al. RITS 2024, Jun 2024, Aubière / Clermont-Ferrand, France Poster de conférence hal-04958946v1
Construction et apprentissage sous contraintes de réseaux monotones pour une classification interprétable et la détection d'anomalies Valentine Wargnier-Dauchelle,Thomas Grenier,Françoise Durand-Dubief,François Cotton,Michaël Sdika Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, Mar 2024, Grenoble, France Poster de conférence hal-04531799v1
Une contrainte faiblement supervisée sur les attributions basées sur le gradient pour une classification interprétable et la détection d'anomalies Valentine Wargnier-Dauchelle,Thomas Grenier,Françoise Durand-Dubief,Francois Cotton,Michael Sdika Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM 2023), Mar 2023, Paris, France Poster de conférence hal-04239875v1
Digital modeling of a heterogeneous and dynamic brain phantom: application to the choice of an RGB camera for intraoperative functional brain mapping studies C. Caredda,Laurent Mahieu-Williame,Raphaël Sablong,Michaël Sdika,Bruno Montcelet al. European Conferences on Biomedical Optics 2023, Jun 2023, Munchen, Germany. SPIE, pp.76, 2023, ⟨10.1117/12.2670750⟩ Poster de conférence hal-04181637v1
Experimental decorrelation requirement for robust estimation of fluorophores using multiple-wavelength excitation fluorescence spectroscopy Arthur Gautheron,Michaël Sdika,Jacques Guyotat,Thiébaud Picart,Laure Alstonet al. Diffuse Optical Spectroscopy and Imaging, Jun 2023, Munich, France. SPIE; SPIE, Proc. SPIE, pp.87, 2023, ⟨10.1117/12.2670879⟩ Poster de conférence hal-04187600v1
Towards quantitative multispectral excitation fluorescence spectroscopy for intraoperative assistance in glioma resection in neurosurgery Arthur Gautheron,Mathieu Hébert,Michaël Sdika,Vincent Duveiller,Lionel Simonotet al. Journée partenariat du LabEx PRIMES, Jun 2022, Lyon, France Poster de conférence hal-03700745v1
Comparison of intraoperative functional brain map obtained with RGB imaging with preoperative functional brain map obtained with functional magnetic Resonance imaging Anne Josset,C. Caredda,Eric van Reeth van Reeth,L. Mahieu-Williame,Raphaël Sablonget al. fNIRS 2021, Oct 2021, London, United Kingdom Poster de conférence hal-03420561v1
Real time intraoperative functional brain mapping using a RGB camera C. Caredda,L. Mahieu-Williame,R. Sablong,M Sdika,J. Guyotatet al. Colloque RITS, May 2019, Tours, France Poster de conférence hal-02142491v1
Intraoperative functional brain mapping based on RGB imaging C. Caredda,L. Mahieu-Williame,R. Sablong,M Sdika,J. Guyotatet al. fNIRS UK, Sep 2019, Birmingham, United Kingdom Poster de conférence hal-02894964v1
Neuroimagerie fonctionnelle multispectrale interventionnelle C. Caredda,L. Mahieu-Williame,R. Sablong,M Sdika,L. Alstonet al. OptDiag 2018, May 2018, Paris, France Poster de conférence hal-02894966v1
MRI-Based Radiomic to Assess Lipomatous Soft Tissue Tumors Malignancy: A Pilot Study Benjamin Leporq,Amine Bouhamama,F. Lame,Catherine Bihane,Michaël Sdikaet al. Forum de la recherche en Cancérologie 2018, Apr 2018, Villeurbanne, France Poster de conférence hal-01990614v1
Segmentation des muscles individuels en IRM basée sur des approches de recalage non-linéaire Augustin C. Ogier,Michaël Sdika,Alexandre Fouré,Arnaud Le Troter,David Bendahan 3ème Congrès de la Société Française de Résonance Magnétique en Biologie et Médecine (SFRMBM), Mar 2017, Bordeaux, France. 2017 Poster de conférence hal-01560300v1
An accurate supervised segmentation of 3D individual lower leg muscles from 7T-MRI using label propagation Augustin C. Ogier,Alexandre Fouré,Michaël Sdika,Arnaud Le Troter,David Bendahan MYO-MRI, Imaging in Neuromuscular Disease, Nov 2017, Berlin, Germany Poster de conférence hal-02000564v1
Segmentation d’images IRM à 7T des muscles individuels basée sur des approches de propagation de masques Augustin C. Ogier,Alexandre Fouré,Michaël Sdika,Arnaud Le Troter,David Bendahan 15es Journées de la Société Française de Myologie (JSFM), Nov 2017, Colmar, France Poster de conférence hal-02000426v1
Repeatability and reproducibility of in vivo magnetic resonance T1rho relaxation time measurements of hip cartilage at 3T Angéline Nemeth,Lucy Di Marco,Denis Grenier,Michaël Sdika,Olivier Beufet al. ISMRM 2016, May 2016, Singapour, Singapore. pp.Abstract #4490 Poster de conférence hal-01434177v1

Ouvrages (1)

Twelve Years of LabEx PRIMES (2012-2024) Francoise Peyrin,Denis Dauvergne,Olivier Beuf,Jean-François Adam,Olivier Bernardet al. Zenodo, 2025, ⟨10.5281/zenodo.14794956⟩ Ouvrages (ouvrage de synthèse) hal-04928878v2

Brevet (1)

Procédé de traitement d'un tissu biologique vivant avec auto-calibrage C. Caredda,Bruno Montcel,Michaël Sdika,L. Mahieu-Williame,Raphaël Sablong France, N° de brevet: 2103802. 2021 Brevet hal-04142155v1

Autre publication scientifique (1)

Simulation de la dynamique du système de déplacements urbains : une plate-forme de modélisation Charles Raux,Michaël Sdika,Vincent Hermemier 2003 Autre publication scientifique halshs-00093625v1

Pré-publication, Document de travail (1)

Fluorescence spectroscopy precorrection model robust to large variability of optical properties: application to point of care quantitative liver graft viability assessment Antoine Uzel,Arthur Gautheron,Olivier Lopez,Guillaume Rossignol,Xavier Mulleret al. 2026 Pré-publication, Document de travail hal-05590468v1