Mikhail POOGGIN INRAE Research director and Team leader at PHIM (Plant Health Institute of Montpellier)

Identifiants chercheurs

IdHAL :

mikhail-pooggin

ORCID :

0000-0003-2308-393X

IdRef :

190854138

Publications

Article dans une revue (40)

Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses from the Plant Viruses Subcommittee, 2025 Luisa Rubino,Peter Abrahamian,Wenxia An,Miguel Aranda,José T Ascencio-Ibañezet al. Journal of General Virology, 2025, 106 (7), pp.002114. ⟨10.1099/jgv.0.002114⟩ Article dans une revue hal-05190019v1
A Novel Parvovirus Associated with the Whitefly Bemisia tabaci Fani Gousi,Zineb Belabess,Nathalie Laboureau,Michel Peterschmitt,Mikhail M Pooggin Pathogens, 2025, 14 (7), pp.714. ⟨10.3390/pathogens14070714⟩ Article dans une revue hal-05190372v1
Erratum for Chesnais et al., &quot;Comparative Plant Transcriptome Profiling of Arabidopsis thaliana Col-0 and Camelina sativa var. Celine Infested with Myzus persicae Aphids Acquiring Circulative and Noncirculative Viruses Reveals Virus-and Plant-Specific Alterations Relevant to Aphid Feeding Behavior and Transmission Quentin Chesnais,Victor Golyaev,Amandine Velt,Camille Rustenholz,Véronique Braultet al. Microbiology Spectrum, 2024, 12 (10), ⟨10.1128/spectrum.01924-24⟩ Article dans une revue hal-04861396v1
A new genus of alphasatellites associated with banana bunchy top virus in Southeast Asia Valentin Guyot,Tien-Dung Trieu,Oudomphone Insisiengmay,Ting Zhang,Marie-Line Iskra-Caruanaet al. Virus Evolution, 2024, 10 (1), pp.vead076. ⟨10.1093/ve/vead076⟩ Article dans une revue hal-04531417v1
Transcriptome and small RNAome profiling uncovers how a recombinant begomovirus evades RDRγ-mediated silencing of viral genes and outcompetes its parental virus in mixed infection Margaux Jammes,Victor Golyaev,Alejandro Fuentes,Nathalie Laboureau,Cica Urbinoet al. PLoS Pathogens, 2024, 20 (1), pp.e1011941. ⟨10.1371/journal.ppat.1011941⟩ Article dans une revue hal-04531146v1
Endogenous viral elements are targeted by RNA silencing pathways in banana Pierre‐Olivier Duroy,Jonathan Seguin,Sébastien Ravel,Rajeswaran Rajendran,Nathalie Laboureauet al. New Phytologist, 2024, 244 (4), pp.1519-1536. ⟨10.1111/nph.20112⟩ Article dans une revue hal-04767201v1
Deep Sequencing Analysis of Virome Components, Viral Gene Expression and Antiviral RNAi Responses in Myzus persicae Aphids Natalia Sukhikh,Victor Golyaev,Nathalie Laboureau,Gabriel Clavijo,Camille Rustenholzet al. International Journal of Molecular Sciences, 2024, 25, pp.13199. ⟨10.3390/ijms252313199⟩ Article dans une revue hal-04867733v1
Cannabis Virome Reconstruction and Antiviral RNAi Characterization through Small RNA Sequencing Niccolo Miotti,Natalia Sukhikh,Nathalie Laboureau,Paola Casati,Mikhail M Pooggin Plants, 2023, 12 (23), pp.3925. ⟨10.3390/plants12233925⟩ Article dans une revue hal-04531033v1
Evidence for Dicot Plants as Alternative Hosts of Banana Bunchy Top Virus and Its Alphasatellites in South-East Asia Valentin Guyot,Ngoc-Sam Ly,Tien-Dung Trieu,Oudomphone Insisiengmay,Ting Zhanget al. Pathogens, 2023, 12 (11), pp.1289. ⟨10.3390/pathogens12111289⟩ Article dans une revue hal-04532281v1
Transcriptomic alterations in the sweet orange vasculature correlate with growth repression induced by a variant of citrus tristeza virus Vicken Aknadibossian,Jose C Huguet-Tapia,Victor Golyaev,Mikhail M. Pooggin,Svetlana Y Folimonova Frontiers in Microbiology, 2023, 14, pp.1162613. ⟨10.3389/fmicb.2023.1162613⟩ Article dans une revue hal-04176634v1
GENOME SEQUENCE ANALYSIS, RT-PCR DIAGNOSTICS AND CONSTRUCTION OF VIRAL PROTEIN-EXPRESSION CASSETES FOR KAZAKH ISOLATE OF ORDINARY AND ANDEAN STRAINS OF POTATO VIRUS S A.M. Alexandrova,Y.A. Yeriskina,R.M. Nargilova,R.V. Kryldakov,Zh.A. Tokbergenovaet al. Eurasian Journal of Applied Biotechnology, 2022, 2, pp.72-82. ⟨10.11134/btp.2.2022.10⟩ Article dans une revue hal-04948862v1
Transcriptome responses of the aphid vector Myzus persicae are shaped by identities of the host plant and the virus Quentin Chesnais,Victor Golyaev,Amandine Velt,Camille Rustenholz Russell,Maxime Verdieret al. Peer Community Journal, 2022, 2, pp.e82. ⟨10.24072/pcjournal.208⟩ Article dans une revue hal-03942207v1
A newly emerging alphasatellite affects banana bunchy top virus replication, transcription, siRNA production and transmission by aphids Valentin Guyot,Rajendran Rajeswaran,Huong Cam Chu,Chockalingam Karthikeyan,Nathalie Laboureauet al. PLoS Pathogens, 2022, 18 (4), pp.e1010448. ⟨10.1371/journal.ppat.1010448⟩ Article dans une revue pasteur-03659357v1
Comparative Plant Transcriptome Profiling of Arabidopsis thaliana Col-0 and Camelina sativa var. &lt;i&gt;Celine&lt;/i&gt; Infested with Myzus persicae Aphids Acquiring Circulative and Noncirculative Viruses Reveals Virus- and Plant-Specific Alterations Relevant to Aphid Feeding Behavior and Transmission Quentin Chesnais,Victor Golyaev,Amandine Velt,Camille Rustenholz,Véronique Braultet al. Microbiology Spectrum, 2022, 10 (4), pp.e00136-22. ⟨10.1128/spectrum.00136-22⟩ Article dans une revue hal-03747649v1
Virus Elimination from Naturally Infected Field Cultivars of Potato (Solanum tuberosum) by Transgenic RNA Interference Alyona Alexandrova,Oxana Karpova,Ruslan Kryldakov,Victor Golyaev,Rufina Nargilovaet al. International Journal of Molecular Sciences, 2022, 23 (14), pp.8020. ⟨10.3390/ijms23148020⟩ Article dans une revue hal-03747765v1
Topical Application of Double-Stranded RNA Targeting 2b and CP Genes of Cucumber mosaic virus Protects Plants against Local and Systemic Viral Infection Maria Holeva,Athanasios Sklavounos,Rajendran Rajeswaran,Mikhail M. Pooggin,Andreas Voloudakis Plants, 2021, 10 (5), pp.963. ⟨10.3390/plants10050963⟩ Article dans une revue hal-03747778v1
Identification and Molecular Characterization of a Novel Hordeivirus Associated With Yellow Mosaic Disease of Privet (Ligustrum vulgare) in Europe Jean-Sébastien Reynard,Silvia Turco,Justine Brodard,Isabelle Kellenberger,François Maclotet al. Frontiers in Microbiology, 2021, 12, ⟨10.3389/fmicb.2021.723350⟩ Article dans une revue hal-03408043v1
Cauliflower mosaic virus protein P6‐TAV plays a major role in alteration of aphid vector feeding behaviour but not performance on infected Arabidopsis Quentin Chesnais,Maxime Verdier,Myriam Burckbuchler,Véronique Brault,Mikhail M. Poogginet al. Molecular Plant Pathology, 2021, 22 (8), pp.911-920. ⟨10.1111/mpp.13069⟩ Article dans une revue hal-03239295v1
Extrachromosomal viral DNA produced by transcriptionally active endogenous viral elements in non-infected banana hybrids impedes quantitative PCR diagnostics of banana streak virus infections in banana hybrids Emeline Ricciuti,Nathalie Laboureau,Guy Noumbissié,Matthieu Chabannes,Natalia Sukhikhet al. Journal of General Virology, 2021, 102 (11), ⟨10.1099/jgv.0.001670⟩ Article dans une revue hal-03434196v1
ICTV Virus Taxonomy Profile: Caulimoviridae Pierre-Yves Teycheney,Andrew D W Geering,Idranil Dasgupta,Roger Hull,Jan F Kreuzeet al. Journal of General Virology, 2020, 101 (10), pp.1025 - 1026. ⟨10.1099/jgv.0.001497⟩ Article dans une revue hal-03025267v1
Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves Victor Golyaev,Thierry Candresse,Frank Rabenstein,Mikhail Pooggin Scientific Reports, 2019, 9, ⟨10.1038/s41598-019-55547-3⟩ Article dans une revue hal-02628261v1
Virus detection by high-throughput sequencing of small RNAs: large scale performance testing of sequence analysis strategies Sébastien Massart,Michela Chiumenti,Kris de Jonghe,Rachel Glover,Annelies Haegemanet al. Phytopathology, 2019, 109 (3), pp.488-497. ⟨10.1094/PHYTO-02-18-0067-R⟩ Article dans une revue hal-02627121v1
Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses Mart Krupovic,Jonas Blomberg,John Coffin,Indranil Dasgupta,Hung Fanet al. Journal of Virology, 2018, 92 (12), pp.e00515-18. ⟨10.1128/JVI.00515-18⟩ Article dans une revue pasteur-01977336v1
Small RNA-Omics for Plant Virus Identification, Virome Reconstruction, and Antiviral Defense Characterization Mikhail Pooggin Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02779⟩ Article dans une revue hal-02624505v1
Small RNA-Omics for Virome Reconstruction and Antiviral Defense Characterization in Mixed Infections of Cultivated Solanum Plants Silvia Turco,Victor Golyaev,Jonathan Seguin,Céline Gilli,Laurent Farinelliet al. Molecular Plant-Microbe Interactions, 2018, 31 (7), pp.707-723. ⟨10.1094/MPMI-12-17-0301-R⟩ Article dans une revue hal-02628890v1
Ribosome Shunting, Polycistronic Translation, and Evasion of Antiviral Defenses in Plant Pararetroviruses and Beyond Mikhail M. Pooggin,Lyuba Ryabova Frontiers in Microbiology, 2018, 9, pp.644. ⟨10.3389/fmicb.2018.00644⟩ Article dans une revue (article de synthèse) hal-02289592v1
RNAi-mediated resistance to viruses: a critical assessment of methodologies Mikhail Pooggin Current Opinion in Virology, 2017, 26, pp.28-35. ⟨10.1016/j.coviro.2017.07.010⟩ Article dans une revue hal-02625206v1
Revisiting the roles of tobamovirus replicase complex proteins in viral replication and silencing suppression Nachelli Malpica-Lopez,Rajendran Rajeswaran,Daria Beknazariants,Jonathan Seguin,Victor Golyaevet al. Molecular Plant-Microbe Interactions, 2017, in press (1), pp.1-97. ⟨10.1094/mpmi-07-17-0164-r⟩ Article dans une revue hal-01607395v1
Viral protein suppresses oxidative burst and salicylic acid-dependent autophagy and facilitates bacterial growth on virus-infected plants Anna S. Zvereva,Victor Golyaev,Silvia Turco,Ekaterina G. Gubaeva,Rajendran Rajeswaranet al. New Phytologist, 2016, 211 (3), pp.1020-1034. ⟨10.1111/nph.13967⟩ Article dans une revue hal-02639310v1
Field Trial and Molecular Characterization of RNAi-Transgenic Tomato Plants That Exhibit Resistance to Tomato Yellow Leaf Curl Geminivirus Alejandro Fuentes,Natacha Carlos,Yoslaine Ruiz,Danay Callard,Yadira Sanchezet al. Molecular Plant-Microbe Interactions, 2016, 29 (3), pp.197-209. ⟨10.1094/MPMI-08-15-0181-R⟩ Article dans une revue hal-02639315v1
MISIS-2: A bioinformatics tool for in-depth analysis of small RNAs and representation of consensus master genome in viral quasispecies Jonathan Seguin,Patricia Otten,Loic Baerlocher,Laurent Farinelli,Mikhail Pooggin Journal of Virological Methods, 2016, 233, pp.37-40. ⟨10.1016/j.jviromet.2016.03.005⟩ Article dans une revue hal-02636856v1
Emergence of a Latent Indian Cassava Mosaic Virus from Cassava Which Recovered from Infection by a Non-Persistent Sri Lankan Cassava Mosaic Virus Chockalingam Karthikeyan,Basavaprabhu L. Patil,Basanta K. Borah,Thulasi R. Resmi,Silvia Turcoet al. Viruses, 2016, 8 (10), ⟨10.3390/v8100264⟩ Article dans une revue hal-02634441v1
MISIS: A bioinformatics tool to view and analyze maps of small RNAs derived from viruses and genomic loci generating multiple small RNAs Jonathan Seguin,Patricia Otten,Loic Baerlocher,Laurent Farinelli,Mikhail Pooggin Journal of Virological Methods, 2014, 195, pp.120-122. ⟨10.1016/j.jviromet.2013.10.013⟩ Article dans une revue hal-02641307v1
Interactions of Rice Tungro Bacilliform Pararetrovirus and Its Protein P4 with Plant RNA-Silencing Machinery Rajendran Rajeswaran,Victor Golyaev,Jonathan Seguin,Anna S. Zvereva,Laurent Farinelliet al. Molecular Plant-Microbe Interactions, 2014, 27 (12), pp.1370-1378. ⟨10.1094/MPMI-07-14-0201-R⟩ Article dans une revue hal-02637328v1
Evasion of Short Interfering RNA-Directed Antiviral Silencing in Musa acuminata Persistently Infected with Six Distinct Banana Streak Pararetroviruses Rajendran Rajeswaran,Jonathan Seguin,Matthieu Chabannes,Pierre-Olivier Duroy,Nathalie Laboureauet al. Journal of Virology, 2014, 88 (19), pp.11516-11528. ⟨10.1128/JVI.01496-14⟩ Article dans une revue hal-02637162v1
De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs Jonathan Seguin,Rajendran Rajeswaran,Nachelli Malpica-Lopez,Robert R. Martin,Kristin Kasschauet al. PLoS ONE, 2014, 9 (2), ⟨10.1371/journal.pone.0088513⟩ Article dans une revue hal-02634925v1
Short ORF-dependent ribosome shunting operates in an RNA picorna-like virus and a DNA pararetrovirus that cause rice tungro disease M.M. Pooggin,R. Rajeswaran,M. Schepetilnikov,L. Ryabova PLoS Pathogens, 2012, 8 (3), pp.e1002568. ⟨10.1371/journal.ppat.1002568⟩ Article dans une revue hal-00680362v1
Specific impact of tobamovirus infection on the Arabidopsis small RNA profile Q. Hu,J. Hollunder,A. Niehl,C.J Kørner,D. Gereigeet al. PLoS ONE, 2011, 6 (5), pp.e19549. ⟨10.1371/journal.pone.0019549⟩ Article dans une revue hal-00595540v1
Translation reinitiation and leaky scanning in plant viruses La Ryabova,Mm Pooggin,T. Hohn Virus research., 2006, 119, pp.52-62 Article dans une revue hal-00093222v1
Mechanism of ribosome shunting in Rice tungro bacilliform pararetrovirus Mm Pooggin,La Ryabova,X. He,J. Futterer,T. Hohn RNA, 2006, 12, pp.841-850 Article dans une revue hal-00093210v1

Poster de conférence (6)

A virus-induced gene silencing (VIGS) approach to study plant-geminivirus-insect vector interactions and virus transmission Fani Gousi,Mikhail M. Pooggin,Michel Peterschmitt,Cica Urbino,Martine Granieret al. ESOVE 2024 - 23. European Society for Vector Ecology Conference, Oct 2024, Montpellier, France. , pp.S4-P13 Poster de conférence hal-05007882v1
Cannabis virome reconstruction and antiviral rnai characterization by small rna sequencing Niccolo Miotti,Natalia Sukhikh,Nathalie Laboureau,Paola Casati,Mikhail Pooggin 12. International Congress of Plant Pathology (ICPP 2023), Aug 2023, Lyon, France. ISPP, pp.808, 2023 Poster de conférence hal-05181006v1
Differential plant transcriptomic responses induced by phloem-restricted and non-phloem-restricted viruses: consequences for host-vector interactions Quentin Chesnais,Victor Golyaev,Amandine Velt,Maxime Verdier,Véronique Braultet al. 18. Rencontres de Virologie Végétale (RVV 2021), Sep 2021, Aussois, France Poster de conférence hal-04754108v1
Infective endogenous viral elements are tightly controlled by RNA silencing pathways in banana Pierre-Olivier Duroy,Jonathan Seguin,Sébastien Ravel,Rajendran Rajeswaran,Nathalie Laboureauet al. EpiCATCH COST Action Conference on "Epigenetic Mechanisms of Crop Adaptation to Climate Change", Jul 2021, Firenze, Italy. COST, pp.13, 2021 Poster de conférence hal-05177591v1
Molecular characterization of the complexity in banana bunchy top virus genome. [P.57] Rajendran Rajeswaran,Valentin Guyot,Nathalie Laboureau,Serge Galzi,Marie-Line Caruanaet al. 17. Rencontres de Virologie Végétale (RVV 2019), Jan 2019, Aussois, France. INRA, pp.116-116, 2019 Poster de conférence hal-05173721v1
High Throughput Sequencing of siRNAs and virus diagnostic: does sequence analysis strategies really matter? Results of an international proficiency testing Sébastien Massart,Ian Adams,Michela Chiumenti,Kris de Jonghe,Igor Koloniuket al. 16. Rencontres de Virologie Végétale (RVV 2017), Jan 2017, Aussois, France. 2017 Poster de conférence hal-01604506v1

Communication dans un congrès (7)

Detection of cryptic viruses and characterization of antiviral defense in Cannabis sativa through small RNA sequencing Niccolo Miotti,Natalia Sukhikh,Nathalie Laboureau,Paola Casati,Mikhail Pooggin National Congress of the Italian Society for Virology, SIV, Jun 2023, Brescia, Italy. 1 p Communication dans un congrès hal-05180546v1
Do DCL proteins play a role in the viral manipulation of host plants and vectors? Quentin Chesnais,Maxime Verdier,Véronique Brault,Mikhail M. Pooggin,M. Drucker 19. Rencontres de virologie végétale (RVV 2023), Jan 2023, Aussois, France Communication dans un congrès hal-04753694v1
Tomato yellow leaf curl virus- IS76, a textbook case of viral emergence triggered by host shift Margaux Jammes,Cica Urbino,Mikhail Pooggin,Clémence Plissonneau,Michel Peterschmitt 31. International Horticultural Congress (IHC2022): International Symposium on Water: a Worldwide Challenge for Horticulture!, ISHS, Aug 2022, Angers, France. 1 p Communication dans un congrès hal-05179810v1
Molecular determinants of the selective advantage of an invasive recombinant begomovirus in tomato plants carrying a Ty-1 resistance gene Margaux Jammes,Victor Golyaev,Clémence Plissonneau,Cica Urbino,Michel Peterschmittet al. International Symposium on ssDNA Viruses (IS3DV), SFV, Sep 2022, Sète, France. 1 p Communication dans un congrès hal-05179828v1
A newly emerging alphasatellite of banana bunchy top virus affects viral replication, transcription, siRNA production and transmission by aphids Valentin Guyot,Rajendran Rajeswaran,Huong Cam Chu,Chockalingam Karthikeyan,Nathalie Laboureauet al. 18. Rencontres de Virologie Végétale (RVV 2021), SFV, Sep 2021, Aussois, France. pp.14 Communication dans un congrès hal-05179927v1
Viruses too divergent for detection by Blast searches: a novel higher order viral taxon in viral metagenomes from the Kerguelen islands and southwest France Laurence Svanella-Dumas,Yuxin Ma,Armelle Marais,Sébastien Theil,Chantal Faureet al. 17. Rencontres de Virologie Végétale (RVV 2019), Jan 2019, Aussois, France Communication dans un congrès hal-02737924v1
A novel alphasatellite associated with Banana bunchy top virus Valentin Guyot,Rajendran Rajeswaran,Nathalie Laboureau,Serge Galzi,Marie-Line Caruanaet al. 17. Rencontres de Virologie Végétale (RVV 2019), INRA; CIRAD; CNRS; SFP; SFV, Jan 2019, Aussois, France. pp.38-38 Communication dans un congrès hal-05173699v1

Chapitre d'ouvrage (2)

Comment les plantes se défendent-elles face aux virus ? Sylvie German-Retana,Mikhail M. Pooggin,Jean-Luc Gallois,Diana Ortiz,Benoît Moury L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, pp.65-75, 2021, 9782759232338 Chapitre d'ouvrage hal-03131013v1
Role of Small RNAs in Virus-Host Interaction Mikhail Pooggin Plant-Virus Interactions : Molecular Biology, Intra- and Intercellular Transport, Chapter 6, Springer International Publishing, 189 p., 2016, 978-3-319-25487-6. ⟨10.1007/978-3-319-25489-0_6⟩ Chapitre d'ouvrage hal-02798767v1