Muriel Joly

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Publications

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Ideas and perspectives: Microorganisms in the air through the lenses of atmospheric chemistry and microphysics

Barbara Ervens , Pierre Amato , Kifle Aregahegn , Muriel Joly , Amina Khaled et al.

Biogeosciences, 2025, 22 (1), pp.243-256. ⟨10.5194/egusphere-2024-2377⟩

Article dans une revue hal-04789117v1
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Multi-kingdom microbial assemblage modulates its metabolism under contrasted cloud conditions

Domitille Jarrige , Jonathan Vyskocil , Muriel Joly , Binta Dieme , Marie Lagree et al.

ISME Communications, In press, 5 (1), pp.ycaf200. ⟨10.1093/ismeco/ycaf200⟩

Article dans une revue hal-05349777v1
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Sugars in clouds: Measurements and modelling investigation of their aqueous photodegradation

Angelica Bianco , Lucas Pailler , Muriel Joly , Anne-Marie Delort , Sophie Darfeuil et al.

Atmospheric Environment, 2025, 350, pp.121167. ⟨10.1016/j.atmosenv.2025.121167⟩

Article dans une revue hal-05229257v1
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La vie dans les nuages

Muriel Joly , Pierre Amato , Angelica Bianco , Marie Morelle , Pierre Joly et al.

Ébullition(s) : le cahier illustré de la recherche, 2025, 3, pp.80-85. ⟨10.59655/nh52122995493⟩

Article dans une revue hal-05184434v1
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Clouds influence the functioning of airborne microorganisms

Raphaëlle Péguilhan , Florent Rossi , Muriel Joly , Engy Nasr , Bérénice Batut et al.

Biogeosciences, 2025, 22 (5), pp.1257-1275. ⟨10.5194/bg-22-1257-2025⟩

Article dans une revue hal-05273494v1

Exploring the synthetic potential of dihydroxyacetone-aldolases from acidophilic organisms

Léo Paulat , Cédric Gastaldi , Lionel Nauton , Mariline Theveniot , Muriel Joly et al.

Catalysis Science & Technology, 2024, 14 (17), pp.5107-5113. ⟨10.1039/D4CY00747F⟩

Article dans une revue cea-05384060v1

Culturable bacteria in clouds at Réunion, tropical island

Thomas Charpentier , Muriel Joly , Céline Judon , Martine Sancelme , Magali Abrantes et al.

Aerobiologia, 2024, 40 (2), pp.297-302. ⟨10.1007/s10453-024-09819-9⟩

Article dans une revue hal-04729278v1
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Comparative analysis of bacterial diversity in clouds and aerosols

Raphaëlle Péguilhan , Florent Rossi , Olivier Rué , Muriel Joly , Pierre Amato

Atmospheric Environment, 2023, 298, pp.119635. ⟨10.1016/j.atmosenv.2023.119635⟩

Article dans une revue hal-04042603v1
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Complete Genome of Sphingomonas aerolata PDD-32b-11, Isolated from Cloud Water at the Summit of Puy de Dôme, France

Domitille Jarrige , Thierry Nadalig , Muriel Joly , Martine Sancelme , Stéphane Vuilleumier et al.

Microbiology Resource Announcements, 2022, ⟨10.1128/mra.00684-22⟩

Article dans une revue hal-03806374v1
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High quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water

Domitille Jarrige , Sajeet Haridas , Claudine Bleykasten-Grosshans , Muriel Joly , Thierry Nadalig et al.

G3, 2022, 12 (12), pp.jkac282. ⟨10.1093/g3journal/jkac282⟩

Article dans une revue hal-03831438v2
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Insights into tropical cloud chemistry in Réunion (Indian Ocean): results from the BIO-MAÏDO campaign

Pamela Dominutti , Pascal Renard , Mickaël Vaïtilingom , Angelica Bianco , Jean-Luc Baray et al.

Atmospheric Chemistry and Physics, 2022, 22 (1), pp.505-533. ⟨10.5194/acp-22-505-2022⟩

Article dans une revue hal-03543373v1
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Effects of sulfonamide antibiotics on aquatic microbial community composition and functions

Martin Paumelle , Florence Donnadieu , Muriel Joly , Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan , Joan Artigas

Environment International, 2021, 146, pp.106198. ⟨10.1016/j.envint.2020.106198⟩

Article dans une revue hal-03037638v1
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Biotic and abiotic transformation of amino acids in cloud water: experimental studies and atmospheric implications

Saly Jaber , Muriel Joly , Maxence Brissy , Martin Leremboure , Amina Khaled et al.

Biogeosciences, 2021, 18 (3), pp.1067-1080. ⟨10.5194/bg-18-1067-2021⟩

Article dans une revue hal-03145507v1
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Seasonal shift in airborne microbial communities

Romie Tignat-Perrier , Aurélien Dommergue , Alban Thollot , Olivier Magand , Pierre Amato et al.

Science of the Total Environment, 2020, 716, pp.137129. ⟨10.1016/j.scitotenv.2020.137129⟩

Article dans une revue hal-02481717v1
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Cézeaux-Aulnat-Opme-Puy De Dôme: a multi-site for the long-term survey of the tropospheric composition and climate change

Jean-Luc Baray , Laurent Deguillaume , Aurélie Colomb , Karine Sellegri , Evelyn Freney et al.

Atmospheric Measurement Techniques, 2020, 13 (6), pp.3413-3445. ⟨10.5194/amt-13-3413-2020⟩

Article dans une revue hal-02883526v1
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Metatranscriptomic exploration of microbial functioning in clouds

Pierre Amato , Ludovic Besaury , Muriel Joly , Benjamin Penaud , Laurent Deguillaume et al.

Scientific Reports, 2019, 9 (1), pp.4383. ⟨10.1038/s41598-019-41032-4⟩

Article dans une revue hal-02098642v1
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Methods to Investigate the Global Atmospheric Microbiome

Aurélien Dommergue , Pierre Amato , Romie Tignat-Perrier , Olivier Magand , Alban Thollot et al.

Frontiers in Microbiology, 2019, 10, pp.243. ⟨10.3389/fmicb.2019.00243⟩

Article dans une revue hal-02122072v1

Assessing extracellular enzymatic activities of biofilms on natural and standardized organic substrata immersed in a stream

M. Joly , Clarisse Mallet , J. Artigas

Aquatic Microbial Ecology, In press, ⟨10.3354/ame01914⟩

Article dans une revue hal-02168138v1
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Biodegradation and toxicity of a maize herbicide mixture: mesotrione, nicosulfuron and S-metolachlor

Louis Carles , Muriel Joly , Frédérique Bonnemoy , Martin Leremboure , Florence Donnadieu et al.

Journal of Hazardous Materials, 2018, 354, pp.42 - 53. ⟨10.1016/j.jhazmat.2018.04.045⟩

Article dans une revue hal-01785204v1
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Active microorganisms thrive among extremely diverse communities in cloud water

Pierre Amato , Muriel Joly , Ludovic Besaury , Anne Oudart , Najwa Taïb et al.

PLoS ONE, 2017, 12 (8), ⟨10.1371/journal.pone.0182869⟩

Article dans une revue hal-01598571v1

Identification of sulfonylurea biodegradation pathways enabled by a novel nicosulfuron-transforming strain Pseudomonas fluorescens SG-1: toxicity assessment and effect of formulation.

Louis Carles , Muriel Joly , Frédérique Bonnemoy , Martin Leremboure , Isabelle Batisson et al.

Journal of Hazardous Materials, 2017, 324, pp.184-193. ⟨10.1016/j.jhazmat.2016.10.048⟩

Article dans une revue hal-01543326v1

Mesotrione Herbicide: Efficiency, Effects, and Fate in the Environment after 15 Years of Agricultural Use

Louis Carles , Muriel Mourguy Joly , Pierre Joly

CLEAN - Soil, Air, Water, 2017, 45 (9), pp.1700011. ⟨10.1002/clen.201700011⟩

Article dans une revue (article de synthèse) hal-01770298v1

Biotransformation of herbicides by aquatic microbial communities associated to submerged leaves.

Louis Carles , Florent Rossi , Muriel Joly , Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan , Isabelle Batisson et al.

Environmental Science and Pollution Research, 2017, 24, pp.3664-3674. ⟨10.1007/s11356-016-8035-9⟩

Article dans une revue hal-01546123v1

Siderophores in Cloud Waters and Potential Impact on Atmospheric Chemistry: Production by Microorganisms Isolated at the Puy de Dôme Station.

Virginie Vinatier , Nolwenn Wirgot , Muriel Mourguy Joly , Martine Sancelme , Magali Abrantes et al.

Environmental Science and Technology, 2016, 50, pp.9315-9323. ⟨10.1021/acs.est.6b02335⟩

Article dans une revue hal-01362537v1
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Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.

Louis Carles , Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan , Muriel Joly , Armelle Vigouroux , Solange Moréra et al.

Biochemical Journal, 2016, 473 (10), pp.1443-1453. ⟨10.1042/BJ20151366⟩

Article dans une revue hal-01457189v1

Survival of microbial isolates from clouds toward simulated atmospheric stress factors.

Muriel Mourguy Joly , Pierre Amato , Martine Sancelme , Virginie Vinatier , Magali Abrantes et al.

Atmospheric Environment, 2015, 117, pp.92-98. ⟨10.1016/j.atmosenv.2015.07.009⟩

Article dans une revue istex hal-01206712v1
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Survival and ice nucleation activity of bacteria as aerosol in a cloud simulation chamber.

Pierre Amato , Muriel Mourguy Joly , C. Schaupp , Eléonore Attard , Ottmar Möhler et al.

Atmospheric Chemistry and Physics, 2015, 15 (11), pp.4055-4082. ⟨10.5194/acp-15-6455-2015⟩

Article dans une revue hal-01206705v1
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Quantification of ice nuclei active at near 0°C temperatures in low-altitude clouds at the Puy de Dôme atmospheric station

Muriel Mourguy Joly , Pierre Amato , Laurent Deguillaume , Marie Monier , C. Hoose et al.

Atmospheric Chemistry and Physics, 2014, 14, pp.8185-8195. ⟨10.5194/acp-14-8185-2014⟩

Article dans une revue hal-01898958v2

Soil surface colonization by phototrophic indigenous organisms, in two contrasted soils treated by formulated maize herbicide mixtures

Pierre Joly , Benjamin Misson , Fanny Perrière , Frédérique Bonnemoy , Muriel Joly et al.

Ecotoxicology, 2014, 23 (9), pp.1648 - 1658. ⟨10.1007/s10646-014-1304-9⟩

Article dans une revue hal-01826038v1
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Classification of clouds sampled at the puy de Dôme (France) from 10-year monitoring: Mean features of their physico-chemical properties.

Laurent Deguillaume , Tiffany Charbouillot , Muriel Mourguy Joly , Mickaël Vaïtilingom , Marius Parazols et al.

Atmospheric Chemistry and Physics, 2014, 14 (3), pp.1485-1506. ⟨10.5194/acp-14-1485-2014⟩

Article dans une revue hal-00951283v1
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An unknown oxidative metabolism substantially contributes to soil CO2 emissions

Vincent Maire , Gaël Alvarez , J Colombet , Aurélie Comby , Romain Despinasse et al.

Biogeosciences, 2013, 10, pp.1155-1167. ⟨10.5194/bg-10-1155-2013⟩

Article dans une revue hal-01190438v1

Ice nucleation activity of bacteria isolated from cloud water

Muriel Mourguy Joly , Eléonore Attard , Martine Sancelme , Laurent Deguillaume , Caroline Guilbaud et al.

Atmospheric Environment, 2013, 70, pp.392 - 400. ⟨10.1016/j.atmosenv.2013.01.027⟩

Article dans une revue istex hal-02650034v1
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An unknown respiration pathwaysubstantially contributes to soil CO2 emissions.

Vincent V. Maire , Gaël Alvarez , J J. Colombet , Aurélie A. Comby , Romain R. Despinasse et al.

Biogeosciences Discussions, 2012, 9, pp.8663-8691

Article dans une revue hal-00964427v1

Chemical and biological signatures of water and fluxes from clouds to rivers at the watershed level in a natural context.

Tiphaine Labed-Veydert , Muriel Joly , Céline Judon , Martin Leremboure , Guillaume Voyard et al.

EGU General Assembly, Apr 2023, Vienna (AUSTRIA), Austria. ⟨10.5194/egusphere-egu23-6760⟩

Communication dans un congrès hal-04149910v1

Clouds boost microbial activity in the atmosphere

Pierre Amato , Raphaëlle Péguilhan , Florent Rossi , Muriel Joly , Jean-Luc Baray et al.

EGU General Assembly, Apr 2023, Vienna (Austria), Austria. ⟨10.5194/egusphere-egu23-5151⟩

Communication dans un congrès hal-04149919v1

Metabolic response of Microbacterium sp. C448 exposed to environmental and medicinal concentrations of sulfamethazine antibiotic

Laurianne Paris , Muriel Joly , Marion Devers-Lamrani , Nadine Rouard , Didier Viala et al.

EcotoxicoMic 2020, 2nd International Conference on Microbial Ecotoxicology, Oct 2020, Montpellier, France

Communication dans un congrès hal-03038484v1

Biofilm interactions can modulate microbial decomposer responses to antibiotics

Martin Paumelle , Florence Donnadieu , Muriel Joly , Joan Artigas , Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan

30th Annual Meeting SETAC Europe,, May 2020, Dublin, Ireland

Communication dans un congrès hal-03038383v1

Potentiel role of the cloud microbiota in atmospheric chemistry.

A.-M. Delort , Laurent Deguillaume , P. Amato , N. Wirgot , V. Vinatier et al.

Colloque sur la Chimie Atmosphérique, Jun 2019, Lyon, France

Communication dans un congrès hal-02288855v1

Capacity of leaf-associated microorganisms to biotransform pesticides in rivers

Louis Carles , Florent Rossi , Muriel Joly , Pascale Besse-Hoggan , Isabelle Batisson et al.

1st International Conference on Microbial Ecotoxicology (EcotoxicoMic), Nov 2017, Lyon, France

Communication dans un congrès hal-04174098v1

Biotransformation et toxicité de mélanges de pesticides

Louis Carles , Pascale Besse-Hoggan , Muriel Joly , Armelle Vigouroux , Solange Moréra et al.

3èmes Journées d'Ecotoxicologie microbienne (EcotoxicoMic), Mar 2016, Valence TGV, France

Communication dans un congrès hal-04174082v1

Herbicide mixture: biotransformation pathway and toxicity

Louis Carles , Pascale Besse-Hoggan , Muriel Joly , Frédérique Bonnemoy , Isabelle Batisson

9th European Conference on Pesticides and Related Organic Micropollutants in the Environment, 15th Symposium on Chemistry and Fate of Modern Pesticides, Oct 2016, Santiago De Compostela, Espagne

Communication dans un congrès hal-04174092v1

NfsA-FRP nitroreductase enzyme family: a new tool to link biotransformation pathways and environmental contamination by mesotrione, a beta-triketone herbicide

Louis Carles , Pascale Besse-Hoggan , Muriel Joly , Armelle Vigouroux , Solange Moréra et al.

Society of Environmental Toxicology and Chemistry (SETAC), May 2016, Nantes, France

Communication dans un congrès hal-04174089v1

Première description d’enzymes impliquées dans la biodégradation de l’herbicide mésotrione : les nitroréductases NfrA1 et NfrA2 de Bacillus megaterium Mes11

Louis Carles , Pascale Besse-Hoggan , Muriel Joly , Isabelle Batisson

7ème colloque de l’Association Francophone d’Ecologie Microbienne (AFEM), Nov 2015, Anglet, France

Communication dans un congrès hal-04174079v1

Étude des noyaux glaçogènes microbiens dans l'eau de nuage au Puy de Dôme (France)

Muriel Mourguy Joly , Pierre Amato , Laurent Deguillaume , Eléonore Attard , Corinna Hoose et al.

MicrobAERO 2013, Université Blaise Pascal, Oct 2013, La Bourboule, France

Communication dans un congrès hal-02750330v1

Biological ice nucleation activity in cloud water

Muriel Joly , Pierre Amato , Laurent Deguillaume , Eléonore Attard , Cindy E. Morris et al.

32. AAAR Annual conference, American Association for Aerosol Research., Sep 2013, Portland, Oregon, United States

Communication dans un congrès hal-02806971v1
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Twenty years of elucidating diversity and function of cloudborne microorganisms: from lab studies to biotechnological applications

Muriel Joly , Mariline Theveniot , Frédéric Mathonat , Raphaëlle Peguilhan , Florent Rossi et al.

Microbes 2024, Oct 2024, Lille, France

Poster de conférence hal-04858048v1

Exploring metabolic acclimation of the cloud microflora to contrasting summer day and winter night conditions using metatranscriptomics and fluxomics approaches

Muriel Joly , Domitille Jarrige , Jonathan Vyscocil , Florent Rossi , Céline Judon et al.

EGU General Assembly, Apr 2023, Vienne, Austria. 2023, ⟨10.5194/egusphere-egu23-6196⟩

Poster de conférence hal-04150031v1

Transcriptomic and proteomic responses of Microbacterium sp. C448 exposed to sulfamethazine antibiotic

Laurianne Paris , Marion Devers-Lamrani , Muriel Joly , Didier Viala , Marie De Antonio et al.

EcotoxicoMic 2022, 3rd international conference on Microbial Ecotoxicology, Nov 2022, Montpellier, France

Poster de conférence hal-04095714v1

Réponse métabolique de Microbacterium sp. C448 exposé à des concentrations environnementale et médicale de l’antibiotique sulfaméthazine.

Laurianne Paris , Muriel Joly , Marion Devers-Lamrani , Nadine Rouard , Didier Viala et al.

10ème colloque de l’AFEM, Nov 2021, MARSEILLE, France

Poster de conférence hal-03416982v1

Comparison of microbial colonization between natural and plastic substrata in a contaminated watershed

Lucie Laffet , Muriel Joly , Louis Carles , Anna Maria Romaní , Joan Artigas

1st international webinar of young microbial ecotoxicology researchers (EcotoxicoMic YR), Nov 2021, Virtual conference, France

Poster de conférence hal-04174584v1

Metabolic response of Microbacterium sp. C448 exposed to environmental and medicinal concentrations of sulfamethazine antibiotic

Laurianne Paris , Muriel Joly , Marion Devers-Lamrani , Nadine Rouard , Didier Viala et al.

Society of Environmental Toxicology and Chemistry (SETAC), May 2020, Dublin, Ireland

Poster de conférence hal-03243435v1

Plastic contaminants in streams: new substrates for microbial activity?

Muriel Joly , Louis Carles , Florent Rossi , Clarisse Mallet , Joan Artigas

19th European Meeting on Environmental Chemistry (EMEC19). Association of Chemistry and the Environment (ACE), Dec 2018, Royat, France

Poster de conférence hal-04174536v1

Herbicide mixture of mesotrione, nicosulfuron and S-metolachlor: biotransformation pathway and toxicity

Louis Carles , Muriel Joly , Frédérique Bonnemoy , Martin Leremboure , Florence Donnadieu et al.

1st International Conference on Microbial Ecotoxicology (EcotoxicoMic), Nov 2017, Lyon, France

Poster de conférence hal-04174320v1

Biotransformation of three maize herbicides by aquatic microbial communities associated to submerged leaf litter

Louis Carles , Florent Rossi , Muriel Joly , Pascale Besse-Hoggan , Isabelle Batisson et al.

4th Biofilm Workshop, Apr 2016, Girona, Spain

Poster de conférence hal-04174298v1

Mélanges d’herbicides : étude des voies de biotransformation et détermination de la toxicité des métabolites

Louis Carles , Pascale Besse-Hoggan , Muriel Joly , Armelle Vigouroux , Solange Moréra et al.

46ème congrès du Groupe Français des Pesticides (GFP), May 2016, Versailles, France

Poster de conférence hal-04174301v1

Complementary chemical and biological approaches to study mesotrione biodegradation pathway by the edaphic Bacillus megaterium strain Mes11: first identification and characterization of degrading enzymes

Louis Carles , Pascale Besse-Hoggan , Muriel Joly , Isabelle Batisson

15th Pesticide Symposium on Pesticide Chemistry, Sep 2015, Piacenza, Italy

Poster de conférence hal-04174290v1

TRICETOX : Etude de l’impact environnemental des herbicides β-tricétones synthétiques et naturels

Christophe Calvayrac , Emilie Rocaboy-Faquet , Sana Romdhane , Marion Devers-Lamrani , Fabrice Martin-Laurent et al.

45ème congrès du Groupe Français des Pesticides (GFP), May 2015, Versailles, France

Poster de conférence hal-04174287v1

New insights into the biodegradation of β-triketone herbicides: role of nitroreductase enzymes in mesotrione transformation

Louis Carles , Pascale Besse-Hoggan , Muriel Joly , Isabelle Batisson

15th EuCheMS International Conference on Chemistry and the Environment (ICCE), Sep 2015, Leipzig, Germany

Poster de conférence hal-04174293v1

Clouds: a transient and stressing habitat for microorganisms.

A.- M. Delort , Mickaël Vaïtilingom , M. Joly , P. Amato , N. Wirgot et al.

C. Chénard, F. M. Lauro. Microbial Ecology of Extreme Environments, Springer, pp.215-245, 2017, 978-3-319-51686-8. ⟨10.1007/978-3-319-51686-8_10⟩

Chapitre d'ouvrage hal-01659419v1

Cloud Microorganisms and their Potential Implication in Atmospheric Chemistry

Muriel Joly , Laurent Deguillaume , Mickaël Vaitilingom , Yoann Long , Virginie Vinatier et al.

Marta Thelin; Julienne Maheux. Clouds: Classification, Microbiology and Environmental Effects, Nova Science Pub Inc., pp.1-46, 2013, 978-1624178566

Chapitre d'ouvrage hal-00951139v1
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Bacterial contribution to nitrogen processing in the atmosphere

Frédéric Mathonat , François Enault , Raphaëlle Péguilhan , Muriel Joly , Mariline Théveniot et al.

2025

Pré-publication, Document de travail hal-05346774v1
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Phototrophy improves the aerial fitness in a photoheterotrophic Methylobacterium isolated from clouds

Frédéric Mathonat , Federico Mazzei , Marie Prévot , Virgina Vernocchi , Elena Gatta et al.

2025

Pré-publication, Document de travail hal-05344310v1
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Clouds influence the functioning of airborne microorganisms

Raphaëlle Péguilhan , Florent Rossi , Muriel Joly , Engy Nasr , Bérénice Batut et al.

2024

Pré-publication, Document de travail hal-04863956v1
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Experimental and methodological framework for the assessment of nucleic acids in airborne microorganisms

Raphaëlle Péguilhan , Florent Rossi , Olivier Rué , Muriel Joly , Pierre Amato

2024

Pré-publication, Document de travail hal-04271307v1
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Clouds, oases for airborne microbes – Differential metagenomics/ metatranscriptomics analyses of cloudy and clear atmospheric situations

Raphaëlle Péguilhan , Florent Rossi , Muriel Joly , Engy Nasr , Bérénice Batut et al.

2024

Pré-publication, Document de travail hal-04626301v1
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Insights into tropical cloud chemistry at Reunion Island (Indian Ocean): results from the BIO-MAÏDO campaign

Pamela Dominutti , Pascal Renard , Mickaël Vaïtilingom , Angelica Bianco , Jean-Luc Baray et al.

2021

Pré-publication, Document de travail hal-03409642v1

Biotic and abiotic transformation of amino acids in cloud water: Experimental studies and atmospheric implications

Saly Jaber , Muriel Joly , Maxence Brissy , Martin Leremboure , Amina Khaled et al.

2020

Pré-publication, Document de travail hal-03024812v1
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Interactions microorganismes-nuage : activité glaçogène et survie

Muriel Mourguy Joly

Microbiologie et Parasitologie. Université Blaise Pascal (Clermont Ferrand 2), 2013. Français. ⟨NNT : ⟩

Thèse tel-01589964v1
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Interactions microorganismes-nuage : activité glaçogène et survie

Muriel Mourguy Joly

Autre. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. ⟨NNT : 2013CLF22424⟩

Thèse tel-01136212v1