Muriel Joly

Publications

Article dans une revue (33)

Ideas and perspectives: Microorganisms in the air through the lenses of atmospheric chemistry and microphysics Barbara Ervens,Pierre Amato,Kifle Aregahegn,Muriel Joly,Amina Khaledet al. Biogeosciences, 2025, 22 (1), pp.243-256. ⟨10.5194/egusphere-2024-2377⟩ Article dans une revue hal-04789117v1
Multi-kingdom microbial assemblage modulates its metabolism under contrasted cloud conditions Domitille Jarrige,Jonathan Vyskocil,Muriel Joly,Binta Dieme,Marie Lagreeet al. ISME Communications, In press, 5 (1), pp.ycaf200. ⟨10.1093/ismeco/ycaf200⟩ Article dans une revue hal-05349777v1
Sugars in clouds: Measurements and modelling investigation of their aqueous photodegradation Angelica Bianco,Lucas Pailler,Muriel Joly,Anne-Marie Delort,Sophie Darfeuilet al. Atmospheric Environment, 2025, 350, pp.121167. ⟨10.1016/j.atmosenv.2025.121167⟩ Article dans une revue hal-05229257v1
La vie dans les nuages Muriel Joly,Pierre Amato,Angelica Bianco,Marie Morelle,Pierre Jolyet al. Ébullition(s) : le cahier illustré de la recherche, 2025, 3, pp.80-85. ⟨10.59655/nh52122995493⟩ Article dans une revue hal-05184434v1
Clouds influence the functioning of airborne microorganisms Raphaëlle Péguilhan,Florent Rossi,Muriel Joly,Engy Nasr,Bérénice Batutet al. Biogeosciences, 2025, 22 (5), pp.1257-1275. ⟨10.5194/bg-22-1257-2025⟩ Article dans une revue hal-05273494v1
Exploring the synthetic potential of dihydroxyacetone-aldolases from acidophilic organisms Léo Paulat,Cédric Gastaldi,Lionel Nauton,Mariline Theveniot,Muriel Jolyet al. Catalysis Science & Technology, 2024, 14 (17), pp.5107-5113. ⟨10.1039/D4CY00747F⟩ Article dans une revue cea-05384060v1
Culturable bacteria in clouds at Réunion, tropical island Thomas Charpentier,Muriel Joly,Céline Judon,Martine Sancelme,Magali Abranteset al. Aerobiologia, 2024, 40 (2), pp.297-302. ⟨10.1007/s10453-024-09819-9⟩ Article dans une revue hal-04729278v1
Comparative analysis of bacterial diversity in clouds and aerosols Raphaëlle Péguilhan,Florent Rossi,Olivier Rué,Muriel Joly,Pierre Amato Atmospheric Environment, 2023, 298, pp.119635. ⟨10.1016/j.atmosenv.2023.119635⟩ Article dans une revue hal-04042603v1
Complete Genome of Sphingomonas aerolata PDD-32b-11, Isolated from Cloud Water at the Summit of Puy de Dôme, France Domitille Jarrige,Thierry Nadalig,Muriel Joly,Martine Sancelme,Stéphane Vuilleumieret al. Microbiology Resource Announcements, 2022, ⟨10.1128/mra.00684-22⟩ Article dans une revue hal-03806374v1
High quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water Domitille Jarrige,Sajeet Haridas,Claudine Bleykasten-Grosshans,Muriel Joly,Thierry Nadaliget al. G3, 2022, 12 (12), pp.jkac282. ⟨10.1093/g3journal/jkac282⟩ Article dans une revue hal-03831438v2
Insights into tropical cloud chemistry in Réunion (Indian Ocean): results from the BIO-MAÏDO campaign Pamela Dominutti,Pascal Renard,Mickaël Vaïtilingom,Angelica Bianco,Jean-Luc Barayet al. Atmospheric Chemistry and Physics, 2022, 22 (1), pp.505-533. ⟨10.5194/acp-22-505-2022⟩ Article dans une revue hal-03543373v1
Effects of sulfonamide antibiotics on aquatic microbial community composition and functions Martin Paumelle,Florence Donnadieu,Muriel Joly,Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan,Joan Artigas Environment International, 2021, 146, pp.106198. ⟨10.1016/j.envint.2020.106198⟩ Article dans une revue hal-03037638v1
Biotic and abiotic transformation of amino acids in cloud water: experimental studies and atmospheric implications Saly Jaber,Muriel Joly,Maxence Brissy,Martin Leremboure,Amina Khaledet al. Biogeosciences, 2021, 18 (3), pp.1067-1080. ⟨10.5194/bg-18-1067-2021⟩ Article dans une revue hal-03145507v1
Seasonal shift in airborne microbial communities Romie Tignat-Perrier,Aurélien Dommergue,Alban Thollot,Olivier Magand,Pierre Amatoet al. Science of the Total Environment, 2020, 716, pp.137129. ⟨10.1016/j.scitotenv.2020.137129⟩ Article dans une revue hal-02481717v1
Cézeaux-Aulnat-Opme-Puy De Dôme: a multi-site for the long-term survey of the tropospheric composition and climate change Jean-Luc Baray,Laurent Deguillaume,Aurélie Colomb,Karine Sellegri,Evelyn Freneyet al. Atmospheric Measurement Techniques, 2020, 13 (6), pp.3413-3445. ⟨10.5194/amt-13-3413-2020⟩ Article dans une revue hal-02883526v1
Metatranscriptomic exploration of microbial functioning in clouds Pierre Amato,Ludovic Besaury,Muriel Joly,Benjamin Penaud,Laurent Deguillaumeet al. Scientific Reports, 2019, 9 (1), pp.4383. ⟨10.1038/s41598-019-41032-4⟩ Article dans une revue hal-02098642v1
Methods to Investigate the Global Atmospheric Microbiome Aurélien Dommergue,Pierre Amato,Romie Tignat-Perrier,Olivier Magand,Alban Thollotet al. Frontiers in Microbiology, 2019, 10, pp.243. ⟨10.3389/fmicb.2019.00243⟩ Article dans une revue hal-02122072v1
Assessing extracellular enzymatic activities of biofilms on natural and standardized organic substrata immersed in a stream M. Joly,Clarisse Mallet,J. Artigas Aquatic Microbial Ecology, In press, ⟨10.3354/ame01914⟩ Article dans une revue hal-02168138v1
Biodegradation and toxicity of a maize herbicide mixture: mesotrione, nicosulfuron and S-metolachlor Louis Carles,Muriel Joly,Frédérique Bonnemoy,Martin Leremboure,Florence Donnadieuet al. Journal of Hazardous Materials, 2018, 354, pp.42 - 53. ⟨10.1016/j.jhazmat.2018.04.045⟩ Article dans une revue hal-01785204v1
Active microorganisms thrive among extremely diverse communities in cloud water Pierre Amato,Muriel Joly,Ludovic Besaury,Anne Oudart,Najwa Taïbet al. PLoS ONE, 2017, 12 (8), ⟨10.1371/journal.pone.0182869⟩ Article dans une revue hal-01598571v1
Identification of sulfonylurea biodegradation pathways enabled by a novel nicosulfuron-transforming strain Pseudomonas fluorescens SG-1: toxicity assessment and effect of formulation. Louis Carles,Muriel Joly,Frédérique Bonnemoy,Martin Leremboure,Isabelle Batissonet al. Journal of Hazardous Materials, 2017, 324, pp.184-193. ⟨10.1016/j.jhazmat.2016.10.048⟩ Article dans une revue hal-01543326v1
Mesotrione Herbicide: Efficiency, Effects, and Fate in the Environment after 15 Years of Agricultural Use Louis Carles,Muriel Mourguy Joly,Pierre Joly CLEAN - Soil, Air, Water, 2017, 45 (9), pp.1700011. ⟨10.1002/clen.201700011⟩ Article dans une revue (article de synthèse) hal-01770298v1
Biotransformation of herbicides by aquatic microbial communities associated to submerged leaves. Louis Carles,Florent Rossi,Muriel Joly,Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan,Isabelle Batissonet al. Environmental Science and Pollution Research, 2017, 24, pp.3664-3674. ⟨10.1007/s11356-016-8035-9⟩ Article dans une revue hal-01546123v1
Siderophores in Cloud Waters and Potential Impact on Atmospheric Chemistry: Production by Microorganisms Isolated at the Puy de Dôme Station. Virginie Vinatier,Nolwenn Wirgot,Muriel Mourguy Joly,Martine Sancelme,Magali Abranteset al. Environmental Science and Technology, 2016, 50, pp.9315-9323. ⟨10.1021/acs.est.6b02335⟩ Article dans une revue hal-01362537v1
Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione. Louis Carles,Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan,Muriel Joly,Armelle Vigouroux,Solange Moréraet al. Biochemical Journal, 2016, 473 (10), pp.1443-1453. ⟨10.1042/BJ20151366⟩ Article dans une revue hal-01457189v1
Survival of microbial isolates from clouds toward simulated atmospheric stress factors. Muriel Mourguy Joly,Pierre Amato,Martine Sancelme,Virginie Vinatier,Magali Abranteset al. Atmospheric Environment, 2015, 117, pp.92-98. ⟨10.1016/j.atmosenv.2015.07.009⟩ Article dans une revue istex hal-01206712v1
Survival and ice nucleation activity of bacteria as aerosol in a cloud simulation chamber. Pierre Amato,Muriel Mourguy Joly,C. Schaupp,Eléonore Attard,Ottmar Möhleret al. Atmospheric Chemistry and Physics, 2015, 15 (11), pp.4055-4082. ⟨10.5194/acp-15-6455-2015⟩ Article dans une revue hal-01206705v1
Quantification of ice nuclei active at near 0°C temperatures in low-altitude clouds at the Puy de Dôme atmospheric station Muriel Mourguy Joly,Pierre Amato,Laurent Deguillaume,Marie Monier,C. Hooseet al. Atmospheric Chemistry and Physics, 2014, 14, pp.8185-8195. ⟨10.5194/acp-14-8185-2014⟩ Article dans une revue hal-01898958v2
Soil surface colonization by phototrophic indigenous organisms, in two contrasted soils treated by formulated maize herbicide mixtures Pierre Joly,Benjamin Misson,Fanny Perrière,Frédérique Bonnemoy,Muriel Jolyet al. Ecotoxicology, 2014, 23 (9), pp.1648 - 1658. ⟨10.1007/s10646-014-1304-9⟩ Article dans une revue hal-01826038v1
Classification of clouds sampled at the puy de Dôme (France) from 10-year monitoring: Mean features of their physico-chemical properties. Laurent Deguillaume,Tiffany Charbouillot,Muriel Mourguy Joly,Mickaël Vaïtilingom,Marius Parazolset al. Atmospheric Chemistry and Physics, 2014, 14 (3), pp.1485-1506. ⟨10.5194/acp-14-1485-2014⟩ Article dans une revue hal-00951283v1
An unknown oxidative metabolism substantially contributes to soil CO2 emissions Vincent Maire,Gaël Alvarez,J Colombet,Aurélie Comby,Romain Despinasseet al. Biogeosciences, 2013, 10, pp.1155-1167. ⟨10.5194/bg-10-1155-2013⟩ Article dans une revue hal-01190438v1
Ice nucleation activity of bacteria isolated from cloud water Muriel Mourguy Joly,Eléonore Attard,Martine Sancelme,Laurent Deguillaume,Caroline Guilbaudet al. Atmospheric Environment, 2013, 70, pp.392 - 400. ⟨10.1016/j.atmosenv.2013.01.027⟩ Article dans une revue istex hal-02650034v1
An unknown respiration pathwaysubstantially contributes to soil CO2 emissions. Vincent V. Maire,Gaël Alvarez,J J. Colombet,Aurélie A. Comby,Romain R. Despinasseet al. Biogeosciences Discussions, 2012, 9, pp.8663-8691 Article dans une revue hal-00964427v1

Communication dans un congrès (12)

Chemical and biological signatures of water and fluxes from clouds to rivers at the watershed level in a natural context. Tiphaine Labed-Veydert,Muriel Joly,Céline Judon,Martin Leremboure,Guillaume Voyardet al. EGU General Assembly, Apr 2023, Vienna (AUSTRIA), Austria. ⟨10.5194/egusphere-egu23-6760⟩ Communication dans un congrès hal-04149910v1
Clouds boost microbial activity in the atmosphere Pierre Amato,Raphaëlle Péguilhan,Florent Rossi,Muriel Joly,Jean-Luc Barayet al. EGU General Assembly, Apr 2023, Vienna (Austria), Austria. ⟨10.5194/egusphere-egu23-5151⟩ Communication dans un congrès hal-04149919v1
Metabolic response of Microbacterium sp. C448 exposed to environmental and medicinal concentrations of sulfamethazine antibiotic Laurianne Paris,Muriel Joly,Marion Devers-Lamrani,Nadine Rouard,Didier Vialaet al. EcotoxicoMic 2020, 2nd International Conference on Microbial Ecotoxicology, Oct 2020, Montpellier, France Communication dans un congrès hal-03038484v1
Biofilm interactions can modulate microbial decomposer responses to antibiotics Martin Paumelle,Florence Donnadieu,Muriel Joly,Joan Artigas,Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan 30th Annual Meeting SETAC Europe,, May 2020, Dublin, Ireland Communication dans un congrès hal-03038383v1
Potentiel role of the cloud microbiota in atmospheric chemistry. A.-M. Delort,Laurent Deguillaume,P. Amato,N. Wirgot,V. Vinatieret al. Colloque sur la Chimie Atmosphérique, Jun 2019, Lyon, France Communication dans un congrès hal-02288855v1
Capacity of leaf-associated microorganisms to biotransform pesticides in rivers Louis Carles,Florent Rossi,Muriel Joly,Pascale Besse-Hoggan,Isabelle Batissonet al. 1st International Conference on Microbial Ecotoxicology (EcotoxicoMic), Nov 2017, Lyon, France Communication dans un congrès hal-04174098v1
Biotransformation et toxicité de mélanges de pesticides Louis Carles,Pascale Besse-Hoggan,Muriel Joly,Armelle Vigouroux,Solange Moréraet al. 3èmes Journées d'Ecotoxicologie microbienne (EcotoxicoMic), Mar 2016, Valence TGV, France Communication dans un congrès hal-04174082v1
Herbicide mixture: biotransformation pathway and toxicity Louis Carles,Pascale Besse-Hoggan,Muriel Joly,Frédérique Bonnemoy,Isabelle Batisson 9th European Conference on Pesticides and Related Organic Micropollutants in the Environment, 15th Symposium on Chemistry and Fate of Modern Pesticides, Oct 2016, Santiago De Compostela, Espagne Communication dans un congrès hal-04174092v1
NfsA-FRP nitroreductase enzyme family: a new tool to link biotransformation pathways and environmental contamination by mesotrione, a beta-triketone herbicide Louis Carles,Pascale Besse-Hoggan,Muriel Joly,Armelle Vigouroux,Solange Moréraet al. Society of Environmental Toxicology and Chemistry (SETAC), May 2016, Nantes, France Communication dans un congrès hal-04174089v1
Première description d’enzymes impliquées dans la biodégradation de l’herbicide mésotrione : les nitroréductases NfrA1 et NfrA2 de Bacillus megaterium Mes11 Louis Carles,Pascale Besse-Hoggan,Muriel Joly,Isabelle Batisson 7ème colloque de l’Association Francophone d’Ecologie Microbienne (AFEM), Nov 2015, Anglet, France Communication dans un congrès hal-04174079v1
Étude des noyaux glaçogènes microbiens dans l'eau de nuage au Puy de Dôme (France) Muriel Mourguy Joly,Pierre Amato,Laurent Deguillaume,Eléonore Attard,Corinna Hooseet al. MicrobAERO 2013, Université Blaise Pascal, Oct 2013, La Bourboule, France Communication dans un congrès hal-02750330v1
Biological ice nucleation activity in cloud water Muriel Joly,Pierre Amato,Laurent Deguillaume,Eléonore Attard,Cindy E. Morriset al. 32. AAAR Annual conference, American Association for Aerosol Research., Sep 2013, Portland, Oregon, United States Communication dans un congrès hal-02806971v1

Poster de conférence (13)

Twenty years of elucidating diversity and function of cloudborne microorganisms: from lab studies to biotechnological applications Muriel Joly,Mariline Theveniot,Frédéric Mathonat,Raphaëlle Peguilhan,Florent Rossiet al. Microbes 2024, Oct 2024, Lille, France Poster de conférence hal-04858048v1
Exploring metabolic acclimation of the cloud microflora to contrasting summer day and winter night conditions using metatranscriptomics and fluxomics approaches Muriel Joly,Domitille Jarrige,Jonathan Vyscocil,Florent Rossi,Céline Judonet al. EGU General Assembly, Apr 2023, Vienne, Austria. 2023, ⟨10.5194/egusphere-egu23-6196⟩ Poster de conférence hal-04150031v1
Transcriptomic and proteomic responses of Microbacterium sp. C448 exposed to sulfamethazine antibiotic Laurianne Paris,Marion Devers-Lamrani,Muriel Joly,Didier Viala,Marie De Antonioet al. EcotoxicoMic 2022, 3rd international conference on Microbial Ecotoxicology, Nov 2022, Montpellier, France Poster de conférence hal-04095714v1
Réponse métabolique de Microbacterium sp. C448 exposé à des concentrations environnementale et médicale de l’antibiotique sulfaméthazine. Laurianne Paris,Muriel Joly,Marion Devers-Lamrani,Nadine Rouard,Didier Vialaet al. 10ème colloque de l’AFEM, Nov 2021, MARSEILLE, France Poster de conférence hal-03416982v1
Comparison of microbial colonization between natural and plastic substrata in a contaminated watershed Lucie Laffet,Muriel Joly,Louis Carles,Anna Maria Romaní,Joan Artigas 1st international webinar of young microbial ecotoxicology researchers (EcotoxicoMic YR), Nov 2021, Virtual conference, France Poster de conférence hal-04174584v1
Metabolic response of Microbacterium sp. C448 exposed to environmental and medicinal concentrations of sulfamethazine antibiotic Laurianne Paris,Muriel Joly,Marion Devers-Lamrani,Nadine Rouard,Didier Vialaet al. Society of Environmental Toxicology and Chemistry (SETAC), May 2020, Dublin, Ireland Poster de conférence hal-03243435v1
Plastic contaminants in streams: new substrates for microbial activity? Muriel Joly,Louis Carles,Florent Rossi,Clarisse Mallet,Joan Artigas 19th European Meeting on Environmental Chemistry (EMEC19). Association of Chemistry and the Environment (ACE), Dec 2018, Royat, France Poster de conférence hal-04174536v1
Herbicide mixture of mesotrione, nicosulfuron and S-metolachlor: biotransformation pathway and toxicity Louis Carles,Muriel Joly,Frédérique Bonnemoy,Martin Leremboure,Florence Donnadieuet al. 1st International Conference on Microbial Ecotoxicology (EcotoxicoMic), Nov 2017, Lyon, France Poster de conférence hal-04174320v1
Biotransformation of three maize herbicides by aquatic microbial communities associated to submerged leaf litter Louis Carles,Florent Rossi,Muriel Joly,Pascale Besse-Hoggan,Isabelle Batissonet al. 4th Biofilm Workshop, Apr 2016, Girona, Spain Poster de conférence hal-04174298v1
Mélanges d’herbicides : étude des voies de biotransformation et détermination de la toxicité des métabolites Louis Carles,Pascale Besse-Hoggan,Muriel Joly,Armelle Vigouroux,Solange Moréraet al. 46ème congrès du Groupe Français des Pesticides (GFP), May 2016, Versailles, France Poster de conférence hal-04174301v1
Complementary chemical and biological approaches to study mesotrione biodegradation pathway by the edaphic Bacillus megaterium strain Mes11: first identification and characterization of degrading enzymes Louis Carles,Pascale Besse-Hoggan,Muriel Joly,Isabelle Batisson 15th Pesticide Symposium on Pesticide Chemistry, Sep 2015, Piacenza, Italy Poster de conférence hal-04174290v1
TRICETOX : Etude de l’impact environnemental des herbicides β-tricétones synthétiques et naturels Christophe Calvayrac,Emilie Rocaboy-Faquet,Sana Romdhane,Marion Devers-Lamrani,Fabrice Martin-Laurentet al. 45ème congrès du Groupe Français des Pesticides (GFP), May 2015, Versailles, France Poster de conférence hal-04174287v1
New insights into the biodegradation of β-triketone herbicides: role of nitroreductase enzymes in mesotrione transformation Louis Carles,Pascale Besse-Hoggan,Muriel Joly,Isabelle Batisson 15th EuCheMS International Conference on Chemistry and the Environment (ICCE), Sep 2015, Leipzig, Germany Poster de conférence hal-04174293v1

Chapitre d'ouvrage (2)

Clouds: a transient and stressing habitat for microorganisms. A.- M. Delort,Mickaël Vaïtilingom,M. Joly,P. Amato,N. Wirgotet al. C. Chénard, F. M. Lauro. Microbial Ecology of Extreme Environments, Springer, pp.215-245, 2017, 978-3-319-51686-8. ⟨10.1007/978-3-319-51686-8_10⟩ Chapitre d'ouvrage hal-01659419v1
Cloud Microorganisms and their Potential Implication in Atmospheric Chemistry Muriel Joly,Laurent Deguillaume,Mickaël Vaitilingom,Yoann Long,Virginie Vinatieret al. Marta Thelin; Julienne Maheux. Clouds: Classification, Microbiology and Environmental Effects, Nova Science Pub Inc., pp.1-46, 2013, 978-1624178566 Chapitre d'ouvrage hal-00951139v1

Pré-publication, Document de travail (7)

Bacterial contribution to nitrogen processing in the atmosphere Frédéric Mathonat,François Enault,Raphaëlle Péguilhan,Muriel Joly,Mariline Théveniotet al. 2025 Pré-publication, Document de travail hal-05346774v1
Phototrophy improves the aerial fitness in a photoheterotrophic Methylobacterium isolated from clouds Frédéric Mathonat,Federico Mazzei,Marie Prévot,Virgina Vernocchi,Elena Gattaet al. 2025 Pré-publication, Document de travail hal-05344310v1
Clouds influence the functioning of airborne microorganisms Raphaëlle Péguilhan,Florent Rossi,Muriel Joly,Engy Nasr,Bérénice Batutet al. 2024 Pré-publication, Document de travail hal-04863956v1
Experimental and methodological framework for the assessment of nucleic acids in airborne microorganisms Raphaëlle Péguilhan,Florent Rossi,Olivier Rué,Muriel Joly,Pierre Amato 2024 Pré-publication, Document de travail hal-04271307v1
Clouds, oases for airborne microbes – Differential metagenomics/ metatranscriptomics analyses of cloudy and clear atmospheric situations Raphaëlle Péguilhan,Florent Rossi,Muriel Joly,Engy Nasr,Bérénice Batutet al. 2024 Pré-publication, Document de travail hal-04626301v1
Insights into tropical cloud chemistry at Reunion Island (Indian Ocean): results from the BIO-MAÏDO campaign Pamela Dominutti,Pascal Renard,Mickaël Vaïtilingom,Angelica Bianco,Jean-Luc Barayet al. 2021 Pré-publication, Document de travail hal-03409642v1
Biotic and abiotic transformation of amino acids in cloud water: Experimental studies and atmospheric implications Saly Jaber,Muriel Joly,Maxence Brissy,Martin Leremboure,Amina Khaledet al. 2020 Pré-publication, Document de travail hal-03024812v1

Thèse (2)

Interactions microorganismes-nuage : activité glaçogène et survie Muriel Mourguy Joly Microbiologie et Parasitologie. Université Blaise Pascal (Clermont Ferrand 2), 2013. Français. ⟨NNT : ⟩ Thèse tel-01589964v1
Interactions microorganismes-nuage : activité glaçogène et survie Muriel Mourguy Joly Autre. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. ⟨NNT : 2013CLF22424⟩ Thèse tel-01136212v1