Nacho MOLINA

Identifiants chercheurs

IdHAL :

nacho-molina

ORCID :

0000-0003-0233-3055

Publications

Article dans une revue (23)

Single-cell multiomics reveals the oscillatory dynamics of mRNA metabolism and chromatin accessibility during the cell cycle Maulik K Nariya,David Santiago-Algarra,Olivier Tassy,Marie Cerciat,Tao Yeet al. Cell Reports, 2025, 44 (8), pp.116089. ⟨10.1016/j.celrep.2025.116089⟩ Article dans une revue hal-05461663v2
Unraveling enteroendocrine cell lineage dynamics and associated gene regulatory networks during intestinal development Sara Jiménez,Florence Blot,Aline Meunier,Rishabh Kapoor,Valérie Schreiberet al. Biology Open, 2025, 14 (10), pp.bio062083. ⟨10.1242/bio.062083⟩ Article dans une revue inserm-05324757v2
Mouse promoters are characterised by low occupancy and high turnover of RNA polymerase II Kasit Chatsirisupachai,Christina J. I. Moene,Rozemarijn Kleinendorst,Elisa Kreibich,Nacho Molinaet al. Molecular Systems Biology, 2025, 21 (5), pp.447 - 471. ⟨10.1038/s44320-025-00094-5⟩ Article dans une revue hal-05081842v1
Gene-specific transcript buffering revealed by perturbation of coactivator complexes Faezeh Forouzanfar,David F Moreno,Damien Plassard,Audrey Furst,Karen Amaral de Oliveiraet al. Science Advances , 2025, 11 (12), pp.eadr1492. ⟨10.1126/sciadv.adr1492⟩ Article dans une revue hal-05001400v2
Transcription processes compete with loop extrusion to homogenize promoter and enhancer dynamics Angeliki Platania,Cathie Erb,Mariano Barbieri,Bastien Molcrette,Erwan Grandgirardet al. Science Advances , 2024, 10 (50), pp.eadq0987. ⟨10.1126/sciadv.adq0987⟩ Article dans une revue hal-04838464v1
Characterization of cell-fate decision landscapes by estimating transcription factor dynamics Sara Jiménez,Valérie Schreiber,Reuben Mercier,Gérard Gradwohl,Nacho Molina Cell Reports Methods, 2023, pp.100512. ⟨10.1016/j.crmeth.2023.100512⟩ Article dans une revue (data paper) inserm-04140681v1
Cell cycle gene regulation dynamics revealed by RNA velocity and deep-learning Andrea Riba,Attila Oravecz,Matej Durik,Sara Jiménez,Violaine Alunniet al. Nature Communications, 2022, 13 (1), pp.2865. ⟨10.1038/s41467-022-30545-8⟩ Article dans une revue hal-03715503v1
Regulation of transcription reactivation dynamics exiting mitosis Sergio Sarnataro,Andrea Riba,Nacho Molina PLoS Computational Biology, 2021, 17 (10), ⟨10.1371/journal.pcbi.1009354⟩ Article dans une revue hal-03123422v1
Precise measurements of chromatin diffusion dynamics by modeling using Gaussian processes Guilherme Oliveira,Attila Oravecz,Dominique Kobi,Manon Maroquenne,Kerstin Bystrickyet al. Nature Communications, 2021, 12 (1), pp.6184. ⟨10.1038/s41467-021-26466-7⟩ Article dans une revue hal-03709399v1
Molecular Co-occupancy Identifies Transcription Factor Binding Cooperativity In Vivo Can Sönmezer,Rozemarijn Kleinendorst,Dilek Imanci,Guido Barzaghi,Laura Villacortaet al. Molecular Cell, 2021, 81 (2), pp.255-267.e6. ⟨10.1016/j.molcel.2020.11.015⟩ Article dans une revue hal-03120499v1
Temporal specificity and heterogeneity of Drosophila immune cells Pierre Cattenoz,Rosy Sakr,Alexia Pavlidaki,Claude Delaporte,Andrea Ribaet al. EMBO Journal, 2020, 39 (12), ⟨10.15252/embj.2020104486⟩ Article dans une revue hal-02909561v2
First Responders Shape a Prompt and Sharp NF-κB-Mediated Transcriptional Response to TNF-α Samuel Zambrano,Alessia Loffreda,Elena Carelli,Giacomo Stefanelli,Federica Colomboet al. iScience, 2020, 23 (9), pp.101529. ⟨10.1016/j.isci.2020.101529⟩ Article dans une revue hal-03044483v1
Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production Julie Piccand,Constance Vagne,Florence Blot,Aline Meunier,Anthony Beucheret al. Molecular metabolism, 2019, 29, pp.24-39. ⟨10.1016/j.molmet.2019.08.007⟩ Article dans une revue hal-02361214v1
Multiple inputs ensure yeast cell size homeostasis during cell cycle progression Cecilia Garmendia-Torres,Olivier Tassy,Audrey Matifas,Nacho Molina,Gilles Charvin eLife, 2018, 7, ⟨10.7554/eLife.34025⟩ Article dans une revue hal-02415732v1
Circadian clock-dependent and -independent posttranscriptional regulation underlies temporal mRNA accumulation in mouse liver Jingkui Wang,Laura Symul,Jake Yeung,Cédric Gobet,Jonathan Sobelet al. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (8), pp.E1916-E1925. ⟨10.1073/pnas.1715225115⟩ Article dans une revue hal-02415718v1
Imaging of native transcription factors and histone phosphorylation at high resolution in live cells Sascha Conic,Dominique Desplancq,Alexia Ferrand,Véronique Fischer,Vincent Heyeret al. Journal of Cell Biology, 2018, 217 (4), pp.1537-1552. ⟨10.1083/jcb.201709153⟩ Article dans une revue hal-02349584v1
Structure of silent transcription intervals and noise characteristics of mammalian genes Felix Naef,Nacho Molina,Benjamin Zoller,Damien Nicolas Molecular Systems Biology, 2015, 11 (7), ⟨10.15252/msb.20156257⟩ Article dans une revue hal-05255027v1
Origins and consequences of transcriptional discontinuity David Suter,Nacho Molina,Felix Naef,Ueli Schibler Current Opinion in Cell Biology, 2011, 23 (6), pp.657-662. ⟨10.1016/j.ceb.2011.09.004⟩ Article dans une revue istex hal-04064189v1
Mammalian Genes Are Transcribed with Widely Different Bursting Kinetics David Suter,Nacho Molina,David Gatfield,Kim Schneider,Ueli Schibleret al. Science, 2011, 332 (6028), pp.472-474. ⟨10.1126/science.1198817⟩ Article dans une revue hal-04028467v1
Scaling laws in functional genome content across prokaryotic clades and lifestyles Nacho Molina,Erik van Nimwegen Trends in Genetics, 2009, 25 (6), pp.243-247. ⟨10.1016/j.tig.2009.04.004⟩ Article dans une revue istex hal-04125158v1
Universal patterns of purifying selection at noncoding positions in bacteria Nacho Molina,Erik van Nimwegen Genome Research, 2008, 18 (1), pp.148-160. ⟨10.1101/gr.6759507⟩ Article dans une revue hal-04126842v1
The evolution of domain-content in bacterial genomes Nacho Molina,Erik van Nimwegen Biology Direct, 2008, 3 (1), pp.51. ⟨10.1186/1745-6150-3-51⟩ Article dans une revue hal-04126801v1
SwissRegulon: a database of genome-wide annotations of regulatory sites Mikhail Pachkov,Ionas Erb,Nacho Molina,Erik Van Nimwegen Nucleic Acids Research, 2007, 35 (Database), pp.D127-D131. ⟨10.1093/nar/gkl857⟩ Article dans une revue hal-04117199v1

Pré-publication, Document de travail (4)

Single-Molecule DNA Footprinting and Transcription Imaging Reveal the Molecular Mechanisms of Promoter Dynamics Vera Slaninova,Flavia Mazzarda,Lasha Dalakishvili,David Depierre,Christina Moeneet al. 2025 Pré-publication, Document de travail hal-05388172v1
Biophysical Modeling Uncovers Transcription Factor and Nucleosome Binding on Single DNA Molecules Lasha Dalakishvili,Husain Managori,Anaïs Bardet,Věra Slaninová,Edouard Bertrandet al. 2025 Pré-publication, Document de travail hal-05083733v1
RNA polymerase II initiation factors show different dynamic behaviour upon induced transcription in live cells Attlia Oravecz,Olivier Tassy,Sascha Conic,Mustapha Oulad-Abdelghani,Nacho Molinaet al. 2026 Pré-publication, Document de travail hal-05468325v1
Competition between transcription and loop extrusion modulates promoter and enhancer dynamics Angeliki Platania,Cathie Erb,Mariano Barbieri,Bastien Molcrette,Erwan Grandgirardet al. 2023 Pré-publication, Document de travail hal-04312310v1

Chapitre d'ouvrage (1)

Visualization of Endogenous Transcription Factors in Single Cells Using an Antibody Electroporation-Based Imaging Approach Sascha Conic,Dominique Desplancq,Alexia Ferrand,Nacho Molina,Etienne Weisset al. Imaging Gene Expression: Methods and Protocols,, pp.209-221, 2019, ⟨10.1007/978-1-4939-9674-2_14⟩ Chapitre d'ouvrage hal-02348123v1