Nathalie Simon

Maître de Conférence - Station Biologique de Roscoff - Sorbonne Université

Documents

Publications

OligoN‐Design: A Simple and Versatile Tool to Design Specific Probes and Primers From Large Heterogeneous Datasets

Miguel Sandin , Marie Walde , Nicolas Henry , Irene Forn , Nathalie Simon et al.

Molecular Ecology Resources, 2026, 26 (3), ⟨10.1111/1755-0998.70140⟩

Article dans une revue hal-05616953v1

Temperature-driven biogeography of marine giant viruses infecting picoeukaryotes Micromonas

David Demory , Hisashi Endo , Anne-Claire Baudoux , Estelle Bigeard , Nigel Grimsley et al.

ISME Communications, 2025, 5 (1), ⟨10.1093/ismeco/ycaf137⟩

Article dans une revue hal-05351912v1

Seasonal dynamics of marine protist communities in tidally mixed coastal waters

Mariarita Caracciolo , Fabienne Rigaut-Jalabert , Sarah Romac , Frédéric Mahé , Samuel Forsans et al.

Molecular Ecology, 2022, 31 (14), pp.3761-3783. ⟨10.1111/mec.16539⟩

Article dans une revue hal-03781932v1

Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel

Laure Arsenieff , Florence Le Gall , Fabienne Rigaut-Jalabert , Frédéric Mahé , Diana Sarno et al.

The International Society of Microbiologial Ecology Journal, 2020, 14 (8), pp.1966-1981. ⟨10.1038/s41396-020-0659-6⟩

Article dans une revue hal-02888711v1

Changes in marine phytoplankton diversity: assessment under the Marine Strategy Framework Directive

Isabelle Rombouts , Nathalie Simon , A Aubert , Thierry Cariou , Éric Feunteun et al.

Ecological Indicators, 2019, 102, pp.265-277. ⟨10.1016/j.ecolind.2019.02.009⟩

Article dans une revue hal-03485708v1

First Viruses Infecting the Marine Diatom Guinardia delicatula

Laure Arsenieff , Nathalie Simon , Fabienne Rigaut-Jalabert , Florence Le Gall , Samuel Chaffron et al.

Frontiers in Microbiology, 2019, 9, pp.3235. ⟨10.3389/fmicb.2018.03235⟩

Article dans une revue hal-01994588v1

Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean

David Demory , Anne-Claire Baudoux , Adam Monier , Nathalie Simon , Christophe Six et al.

The International Society of Microbiologial Ecology Journal, 2019, 13 (1), pp.132-146. ⟨10.1038/s41396-018-0248-0⟩

Article dans une revue hal-01973977v1

Temperature is a key factor in Micromonas-virus interactions

David Demory , Laure Arsenieff , Nathalie Simon , Christophe Six , Fabienne Rigaut-Jalabert et al.

The International Society of Microbiologial Ecology Journal, 2017, 11 (3), pp.601-612. ⟨10.1038/ismej.2016.160⟩

Article dans une revue hal-01464528v1

Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study

Jonne Kotta , Helen Orav-Kotta , Holger Jänes , Herman Hummel , Christos Arvanitidis et al.

Journal of the Marine Biological Association of the United Kingdom, 2017, 97 (3), pp.525-538. ⟨10.1017/S0025315416001351⟩

Article dans une revue istex hal-02470386v1

Geographic patterns of biodiversity in European coastal marine benthos

Herman Hummel , Pim van Avesaath , Sander Wijnhoven , Loran Kleine-Schaars , Steven Degraer et al.

Journal of the Marine Biological Association of the United Kingdom, 2017, 97 (3), pp.507-523. ⟨10.1017/S0025315416001119⟩

Article dans une revue hal-02470399v1

Micromonas versus virus: New experimental insights challenge viral impact

Eliana Ruiz , Anne-Claire Baudoux , Nathalie Simon , Ruth-Anne Sandaa , T. Frede Thingstad et al.

Environmental Microbiology, 2017, 49 (1), pp.168-179. ⟨10.1111/1462-2920.13733⟩

Article dans une revue hal-01511092v1

Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species M. pusilla (Butcher) Manton & Parke and of the Species M. commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic and Phenotypic Characterization of Cultured Isolates

Nathalie Simon , Elodie Foulon , Daphné Grulois , Christophe Six , Yves Desdevises et al.

Protist, 2017, 168 (5), pp.612-635. ⟨10.1016/j.protis.2017.09.002⟩

Article dans une revue hal-01614739v1

Benthic protists: the under-charted majority

Dominik Forster , Micah Dunthorn , Fréderic Mahé , John R. Dolan , Stéphane Audic et al.

FEMS Microbiology Ecology, 2016, 92 (8), pp.fiw120. ⟨10.1093/femsec/fiw120⟩

Article dans une revue hal-01383722v1

Interplay between the genetic clades of Micromonas and their viruses in the Western English Channel

Anne-Claire Baudoux , H Lebredonchel , H Dehmer , M Latimier , R Edern et al.

Environmental Microbiology Reports, 2015, 7 (5), pp.765-773. ⟨10.1111/1758-2229.12309⟩

Article dans une revue istex hal-01196410v1

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

Ramon Massana , Angélique Gobet , Stéphane Audic , David Bass , Lucie Bittner et al.

Environmental Microbiology, 2015, 17 (10), pp.4035-4049. ⟨10.1111/1462-2920.12955⟩

Article dans une revue hal-01191731v1

Patterns of Rare and Abundant Marine Microbial Eukaryotes

Ramiro Logares , Stéphane Audic , David Bass , Lucie Bittner , Christophe Boutte et al.

Current Biology, 2014, 24 (8), pp.813-821. ⟨10.1016/j.cub.2014.02.050⟩

Article dans une revue hal-01149637v1

Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton

Laure Bellec , Camille Clerissi , Roseline Edern , Elodie Foulon , Nathalie Simon et al.

BMC Evolutionary Biology, 2014, 14 (1), pp.59. ⟨10.1186/1471-2148-14-59⟩

Article dans une revue hal-01100644v1

The founding charter of the Genomic Observatories Network

Neil Davies , Dawn Field , Linda Amaral-Zettler , Melody S. Clark , John Deck et al.

GigaScience, 2014, 3, pp.2. ⟨10.1186/2047-217X-3-2⟩

Article dans une revue hal-01110116v1

An annotated checklist of Marine Phytoplankton taxa at the SOMLIT-Astan time series off Roscoff (Western English Channel, France): data collected from 2000 to 2010

L. Guilloux , Fabienne Rigaut-Jalabert , Fabien Jouenne , Stephanie Ristori , Manon Viprey et al.

Cahiers de Biologie Marine, 2013, 54 (2), pp.247-256

Article dans une revue hal-01253993v1

Ecological and evolutionary genomics of marine photosynthetic organisms.

Susana M Coelho , Nathalie Simon , Sophia Ahmed , J Mark Cock , Frédéric Partensky

Molecular Ecology, 2013, 22 (3), pp.867-907. ⟨10.1111/mec.12000⟩

Article dans une revue hal-00817749v1

Interactions between scientists, managers and policy makers in the framework of the French MediOs project on Ostreopsis (2008-2010)

Rodolphe Lemée , Luisa Mangialajo , Stéphanie Cohu , Zouher Amzil , A. Blanfuné et al.

Cryptogamie Algologie, 2012, 33 (2), pp.137-142. ⟨10.7872/crya.v33.iss2.2011.137⟩

Article dans une revue hal-00927010v1

Occurrence of the toxic dinoflagellate Ostreopsis cf. ovata in relation with environmental factors in Monaco (NW Mediterranean)

Stephanie Cohu , Thierry Thibaut , Luisa Mangialajo , Jean-Philippe Labat , Ornella Passafiume et al.

Marine Pollution Bulletin, 2011, 62 (12), pp.2681-2691. ⟨10.1016/j.marpolbul.2011.09.022⟩

Article dans une revue istex hal-00927014v1

Distribution and host diversity of Amoebophryidae parasites across oligotrophic waters of the Mediterranean Sea

R. Siano , C. Alves-De-Souza , Elodie Foulon , El Mahdi Bendif , Nathalie Simon et al.

Biogeosciences, 2011, 8 (2), pp.267-278. ⟨10.5194/bg-8-267-2011⟩

Article dans une revue hal-01254008v1

Diversity and evolution of marine phytoplankton

Nathalie Simon , Anne-Lise Cras , Elodie Foulon , Rodolphe Lemée

Comptes Rendus. Biologies, 2009, 332 (2-3), pp.159-170. ⟨10.1016/j.crvi.2008.09.009⟩

Article dans une revue istex hal-01254022v1

Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry.

Isabelle C. Biegala , Fabrice Not , Daniel Vaulot , Nathalie Simon

Applied and Environmental Microbiology, 2003

Article dans une revue hal-01829143v1

Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition

N Not , N Simon , Ic Biegala , D. Vaulot

Aquatic Microbial Ecology, 2002, 28, pp.157 - 166. ⟨10.3354/ame028157⟩

Article dans une revue hal-01829149v1

Kinetics of attachment of potentially toxic bacteria to Alexandrium tamarense

N Simon , Ic Biegala , Ea Smith , D. Vaulot

Aquatic Microbial Ecology, 2002, 28, pp.249 - 256. ⟨10.3354/ame028249⟩

Article dans une revue hal-01829170v1

Kinetics of attachment of potentially toxic bacteria to Alexandrium tamarense

Nathalie Simon , Isabelle C. Biegala , Elisabeth Smith , Daniel Vaulot

Aquatic Microbial Ecology, 2002, 28, pp.249-256. ⟨10.3354/ame028249⟩

Article dans une revue ird-03759327v1

Oligonucleotide Probes for the Identification of Three Algal Groups by Dot Blot and Fluorescent Whole-Cell Hybridization

Nathalie Simon , Lisa Campbell , Erla Ornolfsdottir , Rene Groben , Laure Guillou et al.

Journal of Eukaryotic Microbiology, 2000, 47 (1), pp.76-84. ⟨10.1111/j.1550-7408.2000.tb00014.x⟩

Article dans une revue hal-03446951v1

RECENT ADVANCES IN THE USE OF MOLECULAR TECHNIQUES TO ASSESS THE GENETIC DIVERSITY OF MARINE PHOTOSYNTHETIC MICROORGANISMS

F Partensky , L Guillou , N Simon , D Vaulot

Vie et Milieu / Life & Environment, 1997, pp.367-374

Article dans une revue hal-03103861v1

The identification of Chrysochromulina and Prymnesium species (Haptophyta, Prymnesiophyceae) using fluorescent or chemiluminescent oligonucleotide probes: a means for improving studies on toxic algae

N. Simon , J. Brenner , B. Edvardsen , L. K. Medlin

European Journal of Phycology, 1997, 32 (4), pp.393-401

Article dans une revue hal-01663419v1

IDENTIFICATION OF THE CLASS PRYMNESIOPHYCEAE AND THE GENUS PHAEOCYSTIS WITH RIBOSOMAL RNA-TARGETED NUCLEIC ACID PROBES DETECTED BY FLOW CYTOMETRY

Martin Lange , Laure Guillou , Nathalie Simon , Daniel Vaulot , Rudolf Amann et al.

Journal of Phycology, 1996, 32 (5), pp.858-868. ⟨10.1111/j.0022-3646.1996.00858.x⟩

Article dans une revue istex hal-03446932v1

Développement d’indicateurs de biodiversité: comparaison des données classiques et moléculaires pour étudier les changements de composition des communautés microbiennes marines

Benjamin Alric , Nathalie Simon , Loïs Maignien , Isabelle Gailhard-Rocher , Dorothée Vincent et al.

Journées scientifiques du Service National d'Observation PHYTOBS, Pascal Claquin; Maud Lemoine; Fabienne Rigaut-Jalabert; Véronique Cornet-Barthaux; Nadine Masson, Sep 2022, Roscoff, France

Communication dans un congrès hal-04496229v1

DIVERSITY OF EUKARYOTIC PICOPLANKTON IN COASTAL WATERS

Daniel Vaulot , Kadidja Romari , Klaus Valentine , Fabrice Not , Nathalie Simon et al.

J. Phycol, 2001, Oslo, Norway

Communication dans un congrès ird-03759323v1

Impact de la température sur les interactions entre la microalgue marine Micromonas et les virus qui l’infectent

David Demory , Laure Arsenieff , Nathalie Simon , Christophe Six , Fabienne Rigaut-Jalabert et al.

VIIIe Colloque de l'Association Francophone d'Ecologie Microbienne,, Oct 2017, Camaret-sur-Mer, France

Poster de conférence hal-02368611v1

BIOGEOCHEMICAL dataset collected during the TONGA cruise

Cécile Guieu , Sophie Bonnet , Fatima Abadou , Samir Alliouane , Sophie Arnaud-Haond et al.

2023, ⟨10.17882/88169⟩

Autre publication scientifique hal-05291643v1

Seasonal patterns in Synechococcus pigment diversity at two temperate sites with contrasting oceanic regimes

Louison Dufour , Emile Faure , Frédéric Partensky , Francesco Mattei , Julia Uitz et al.

2026

Pré-publication, Document de travail hal-05760151v1

RNA virus infection reshapes carbon and nitrogen partitioning in a marine diatom

Emmanuelle Jaouen , Chiara Fiorile , Pascal Riera , Lucie Blondel , Martin Gachenot et al.

2026

Pré-publication, Document de travail hal-05733386v1

The JEDI marker as a universal measure of planetary biodiversity

Taylor Priest , Nicolas Henry , Thomas Weber , Laurine Planat , Coralie Rousseau et al.

2026

Pré-publication, Document de travail hal-05507468v1

OligoN-design: A simple and versatile tool to design specific probes and primers from large heterogeneous datasets

Miguel Sandin , Marie Walde , Nicolas Henry , Irene Forn , Nathalie Simon et al.

2026

Pré-publication, Document de travail hal-05546675v1

Viral infection impacts the 3D subcellular structure of the abundant marine diatom Guinardia delicatula

Marie Walde , Cyprien Camplong , Colomban de Vargas , Anne-Claire Baudoux , Nathalie Simon

2022

Pré-publication, Document de travail hal-03853708v1

PHYTOBS dataset - French National Service of Observation for Phytoplankton in coastal waters

Maud Lemoine , Pascal Claquin , Eric Abadie , Christophe Arnaud , Luis Felipe Artigas et al.

2021

Pré-publication, Document de travail hal-03553028v1

Seasonal temporal dynamics of marine protists communities in tidally mixed coastal waters

Mariarita Caracciolo , Fabienne Rigaut-Jalabert , Sarah Romac , Frédéric Mahé , Samuel Forsans et al.

2021

Pré-publication, Document de travail hal-03454364v1

Données génétiques et indicateurs de biodiversité microbienne pélagique

Benjamin Alric , Christian Jeanthon , Loïs Maignien , Urania Christaki , Nathalie Simon

Station biologique de Roscoff, CNRS-UMPC-INSU, Place Georges Tessier, 29680 Roscoff. 2023, pp.78

Rapport hal-04495506v1

Typologie des habitats marins benthiques de la Manche, de la Mer du Nord et de l'Atlantique - VERSION 3

Noëmie Michez , Éric Thiébaut , Stanislas Dubois , Line Le Gall , Jean-Claude Dauvin et al.

PatriNat (AFB-CNRS-MNHN). 2019, 52 p

Rapport hal-02084698v1

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