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Nicolas Barnich

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Adherent-invasive E. coli – induced specific IgA limits pathobiont localization to the epithelial niche in the gut

Rika Tanaka , Jin Imai , Hitoshi Tsugawa , Karl Bil Eap , Masaki Yazawa
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1031997⟩
Article dans une revue hal-04181840v1
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Epigenetic master regulators HDAC1 and HDAC5 control pathobiont Enterobacteria colonization in ileal mucosa of Crohn’s disease patients

Mélissa Chervy , Adeline Sivignon , Flavie Dambrine , Anthony Buisson , Pierre Sauvanet
Gut microbes, 2022, 14 (1), pp.1-13. ⟨10.1080/19490976.2022.2127444⟩
Article dans une revue hal-03881385v1
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Determination of biomarkers associated with neoadjuvant treatment response focusing on colibactin-producing Escherichia coli in patients with mid or low rectal cancer: a prospective clinical study protocol (MICARE)

Christophe Taoum , Guillaume Carrier , Marta Jarlier , Gwenaelle Roche , Johan Gagniere
BMJ Open, 2022, 12 (12), pp.e061527. ⟨10.1136/bmjopen-2022-061527⟩
Article dans une revue hal-03907379v1

Phage therapy against adherent-invasive E. coli : towards a promising treatment of Crohn’s disease patients?

Delphine Boucher , Nicolas Barnich
Journal of Crohn's and Colitis, 2022, pp.1-2. ⟨10.1093/ecco-jcc/jjac070⟩
Article dans une revue hal-03746581v1

Anti-TNF agents restrict adherent-invasive Escherichia coli replication within macrophages through modulation of chitinase 3-like 1 in patients with Crohn’s disease

Clara Douadi , Emilie Vazeille , Christophe Chambon , Michel Hébraud , Margot Fargeas
Journal of Crohn's and Colitis, 2022, ⟨10.1093/ecco-jcc/jjab236⟩
Article dans une revue hal-03529112v1
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An adherent-invasive Escherichia coli -colonized mouse model to evaluate microbiota-targeting strategies in Crohn's disease

Adeline Sivignon , Mélissa Chervy , Caroline Chevarin , Elia Ragot , Elisabeth Billard
Disease Models & Mechanisms, 2022, 15 (10), pp.dmm049707. ⟨10.1242/dmm.049707⟩
Article dans une revue hal-03907399v1
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Beneficial Effects of Linseed Supplementation on Gut Mucosa-Associated Microbiota in a Physically Active Mouse Model of Crohn's Disease

Claire Plissonneau , Adeline Sivignon , Benoit Chassaing , Frédéric Capel , Vincent Martin
International Journal of Molecular Sciences, 2022, 23 (11), pp.1-21. ⟨10.3390/ijms23115891⟩
Article dans une revue hal-03677749v1
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The Nutrition-Microbiota-Physical Activity Triad: An Inspiring New Concept for Health and Sports Performance

Nathalie Boisseau , Nicolas Barnich , Christelle Koechlin-Ramonatxo
Nutrients, 2022, 14, pp.1-25. ⟨10.3390/nu14050924⟩
Article dans une revue hal-03590793v1
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Faster and less invasive tools to identify patients with ileal colonization by adherent‐invasive E. coli in Crohn's disease

Anthony Buisson , Emilie Vazeille , Mathurin Fumery , Benjamin Pariente , Stéphane Nancey
United European Gastroenterology Journal, 2021, 9 (9), p.1007 - 1018. ⟨10.1002/ueg2.12161⟩
Article dans une revue hal-03454309v1
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High-Intensity interval training and α-linolenic acid supplementation improve DHA conversion and increase the abundance of gut mucosa-associated oscillospira bacteria

Claire Plissonneau , Frédéric Capel , Benoit Chassaing , Marine Dupuit , Florie Maillard
Nutrients, 2021, 788, 13 (3), pp.1-19. ⟨10.3390/nu13030788⟩
Article dans une revue hal-03154591v1
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Beneficial Effects of High Intensity Interval Training and/or Linseed Oil Supplementation to Limit Obesity-Induced Oxidative Stress in High Fat Diet-Fed Rats

Carole Groussard , Claire Plissonneau , Laurie Josset , Frédéric Capel , Mathilde Mura
Nutrients, 2021, 13 (10), pp.3531. ⟨10.3390/nu13103531⟩
Article dans une revue hal-03420264v1
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Association of adherent-invasive Escherichia coli with severe gut mucosal dysbiosis in Hong Kong chinese population with Crohn’s disease

Zhilu Xu , Keli Yang , Caroline Chevarin , Jingwan Zhang , Yu Lin
Gut microbes, 2021, 13 (1), pp.1-14. ⟨10.1080/19490976.2021.1994833⟩
Article dans une revue hal-03482272v1
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When pathobiont-carbohydrate interaction turns bittersweet!

Nicolas Barnich , Benoit Chassaing
Cellular and Molecular Gastroenterology and Hepatology, 2021, 12 (4), pp.1509-1510. ⟨10.1016/j.jcmgh.2021.08.008⟩
Article dans une revue hal-03630505v1
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Beneficial Effects of Natural Mineral Waters on Intestinal Inflammation and the Mucosa-Associated Microbiota

Nicolas Barnich , Michael Rodrigues , Pierre Sauvanet , Caroline Chevarin , Sylvain Denis
International Journal of Molecular Sciences, 2021, 22 (9), pp.4336. ⟨10.3390/ijms22094336⟩
Article dans une revue hal-03238454v1
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Gut microbiota as potential biomarker and/or therapeutic target to improve the management of cancer: focus on colibactin-producing Escherichia coli in colorectal cancer

Julie Veziant , Romain Villéger , Nicolas Barnich , Mathilde Bonnet
Cancers, 2021, 13 (9), pp.1-19. ⟨10.3390/cancers13092215⟩
Article dans une revue hal-03467852v1
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The TOTUM-63 Supplement and High-Intensity Interval Training Combination Limits Weight Gain, Improves Glycemic Control, and Influences the Composition of Gut Mucosa-Associated Bacteria in Rats on a High Fat Diet

Marine Dupuit , Vivien Chavanelle , Benoit Chassaing , Fanny Perriere , Monique Etienne
Nutrients, 2021, 13 (5), pp.1-24. ⟨10.3390/nu13051569⟩
Article dans une revue hal-03220475v1

Adaptation of adherent-invasive E. coli to gut environment: Impact on flagellum expression and bacterial colonization ability

Gwladys Sevrin , Sébastien Massier , Benoit Chassaing , Allison Agus , Julien Delmas
Gut microbes, 2020, 11 (3), pp.364-380. ⟨10.1080/19490976.2017.1421886⟩
Article dans une revue hal-01730371v1

Dietary l-serine confers a competitive fitness advantage to Enterobacteriaceae in the inflamed gut

Sho Kitamoto , Christopher Alteri , Michael Rodrigues , Hiroko Nagao-Kitamoto , Kohei Sugihara
Nature Microbiology, 2020, 5 (1), pp.116-125. ⟨10.1038/s41564-019-0591-6⟩
Article dans une revue hal-02541666v1
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Differential miRNA-Gene Expression in M Cells in Response to Crohn’s Disease-Associated AIEC

Anaïs Larabi , Laurène Salesse , Charlotte Cordonnier , Lucie Etienne-Mesmin , Nicolas Barnich
Microorganisms, 2020, 8 (8), pp.1205. ⟨10.3390/microorganisms8081205⟩
Article dans une revue hal-02935826v1

Colibactin‐positive Escherichia coli induce a procarcinogenic immune environment leading to immunotherapy resistance in colorectal cancer

Amélie Lopès , Elisabeth Billard , Al Hassan Casse , Romain Villeger , Julie Veziant
International Journal of Cancer, 2020, 146 (11), pp.3147-3159. ⟨10.1002/ijc.32920⟩
Article dans une revue hal-02913026v1

DOP49 Quantitative proteomics analysis of macrophages from Crohn’s disease patients and infected with adherent-invasive Escherichia coli

C Douadi , E Vazeille , Christophe Chambon , Michel Hébraud , M Dodel
Journal of Crohn's and Colitis, 2020, 14 (Supplement_1), pp.S087-S088. ⟨10.1093/ecco-jcc/jjz203.088⟩
Article dans une revue hal-02539567v1

Prognostic value of a combination of innovative factors (gut microbiota, sarcopenia, obesity, metabolic syndrome) to predict surgical/oncologic outcomes following surgery for sporadic colorectal cancer: a prospective cohort study protocol (METABIOTE)

Julie Veziant , Karine Poirot , Caroline Chevarin , Lucie Cassagnes , Pierre Sauvanet
BMJ Open, 2020, 10 (1), pp.e031472. ⟨10.1136/bmjopen-2019-031472⟩
Article dans une revue hal-02518339v1
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Methyl-donor supplementation prevents intestinal colonization by Adherent-invasive E. coli in a mouse model of crohn's disease

Elodie Gimier , Mélissa Chervy , Allison Agus , Adeline Sivignon , Elisabeth Billard
Scientific Reports, 2020, 10, pp.12922. ⟨10.1038/s41598-020-69472-3⟩
Article dans une revue hal-02917129v1
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Adherent-Invasive E. coli: Update on the Lifestyle of a Troublemaker in Crohn's Disease

Mélissa Chervy , Nicolas Barnich , Jérémy Denizot
International Journal of Molecular Sciences, 2020, 21 (10), pp.3734. ⟨10.3390/ijms21103734⟩
Article dans une revue hal-02917127v1
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Dietary Emulsifiers Directly Impact Adherent-Invasive E. coli Gene Expression to Drive Chronic Intestinal Inflammation

Emilie Viennois , Alexis Bretin , Philip Dubé , Alexander Maue , Charlène J.G. Dauriat
Cell Reports, 2020, 33 (1), pp.108229. ⟨10.1016/j.celrep.2020.108229⟩
Article dans une revue hal-03042975v1
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New insights into the interplay between autophagy, gut microbiota and inflammatory responses in IBD

Anaïs Larabi , Nicolas Barnich , Hang Thi Thu Nguyen
Autophagy, inPress, 16 (1), pp.38-51. ⟨10.1080/15548627.2019.1635384⟩
Article dans une revue hal-03001079v1

Is BRCA2 involved in early onset colorectal cancer risk?

Mathilde Gay‐bellile , Maud Privat , Alexandra Martins , Sandrine Caputo , Céline Pebrel‐richard
Clinical Genetics, 2020, 97 (4), pp.668-669. ⟨10.1111/cge.13679⟩
Article dans une revue hal-02518337v1

When adherent-invasive E. coli plays with host glycosylation: Does it open new perspectives for therapeutic strategies in Crohn's disease?

Jérémy Denizot , Nicolas Barnich
EBioMedicine, 2020, 55, pp.1-2. ⟨10.1016/j.ebiom.2020.102752⟩
Article dans une revue hal-02912994v1
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Ulcerative Colitis-associated E. coli pathobionts potentiate colitis in susceptible hosts

Hyungjun Yang , Hengameh Chloé Mirsepasi-Lauridsen , Carsten Struve , Joannie M Allaire , Adeline Sivignon
Journal of Immunology, 2020, 12 (1), pp.1-20. ⟨10.1080/19490976.2020.1847976⟩
Article dans une revue hal-03003143v1
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Autophagy of Intestinal Epithelial Cells Inhibits Colorectal Carcinogenesis Induced by Colibactin-Producing Escherichia coli in Apc Mice

Cecily Lucas , Laurène Salesse , My Hanh Thi Hoang , Mathilde Bonnet , Pierre Sauvanet
Gastroenterology, 2020, 158 (5), pp.1373-1388. ⟨10.1053/j.gastro.2019.12.026⟩
Article dans une revue hal-02518438v1

Exosomes transfer miRNAs from cell-to-cell to inhibit autophagy during infection with Crohn’s disease-associated adherent-invasive E. coli

Anaïs Larabi , Guillaume Dalmasso , Julien Delmas , Nicolas Barnich , Hang Thi Thu Nguyen
Gut microbes, 2020, 11 (6), pp.1677-1694. ⟨10.1080/19490976.2020.1771985⟩
Article dans une revue hal-03001063v1
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Pathogenicity Factors of Genomic Islands in Intestinal and Extraintestinal Escherichia coli

Mickaël Desvaux , Guillaume Dalmasso , Racha Beyrouthy , Nicolas Barnich , Julien Delmas
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.02065⟩
Article dans une revue hal-02948743v1
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Emerging Role of Exosomes in Diagnosis and Treatment of Infectious and Inflammatory Bowel Diseases

Anaïs Larabi , Nicolas Barnich , Hang Thi Thu Nguyen
Cells, 2020, 9 (5), pp.1111. ⟨10.3390/cells9051111⟩
Article dans une revue hal-03001072v1
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Fecal dysbiosis associated with colonic hypersensitivity and behavioral alterations in chronically Blastocystis-infected rats

Manon Defaye , Céline Nourrisson , Elodie Baudu , Amandine Lashermes , Maeva Meynier
Scientific Reports, 2020, 10 (1), pp.9146. ⟨10.1038/s41598-020-66156-w⟩
Article dans une revue inserm-02884871v1

Prominence of ileal mucosa-associated microbiota to predict postoperative endoscopic recurrence in Crohn’s disease

Harry Sokol , Loic Brot , Carmen Stefanescu , Claire Auzolle , Nicolas Barnich
Gut, 2020, 69 (3), pp.462-472. ⟨10.1136/gutjnl-2019-318719⟩
Article dans une revue hal-02193634v1

Characterization of mucosa-associated Escherichia coli strains isolated from Crohn’s disease patients in Brazil

Rafaella F. A. Costa , Maria L. A. Ferrari , Marie-Agnès Bringer , Arlette Darfeuille-Michaud , Flaviano S. Martins
BMC Microbiology, 2020, 20 (1), pp.178. ⟨10.1186/s12866-020-01856-x⟩
Article dans une revue hal-02903480v1
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Study of a classification algorithm for AIEC identification in geographically distinct E. coli strains

Carla Camprubí-Font , Paula Bustamante , Roberto M Vidal , Claire L O'Brien , Nicolas Barnich
Scientific Reports, 2020, 10 (1), pp.8094. ⟨10.1038/s41598-020-64894-5⟩
Article dans une revue inserm-02865390v1
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TH1 cell-inducing Escherichia coli strain identified from the small intestinal mucosa of patients with Crohn’s disease

Manabu Nagayama , Tomonori Yano , Koji Atarashi , Takeshi Tanoue , Mariko Sekiya
Gut microbes, 2020, 12 (1), pp.1788898. ⟨10.1080/19490976.2020.1788898⟩
Article dans une revue hal-03042977v1

Flagellin-mediated activation of IL-33-ST2 signaling by a pathobiont promotes intestinal fibrosis

Jin Imai , Sho Kitamoto , Kohei Sugihara , Hiroko Kitamoto , Atsushi Hayashi
Mucosal Immunology, 2019, 12 (3), pp.632-643. ⟨10.1038/s41385-019-0138-4⟩
Article dans une revue hal-02193572v1
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Crohn’s Disease-Associated Adherent-Invasive Escherichia coli Manipulate Host Autophagy by Impairing SUMOylation

Guillaume Dalmasso , Hang Nguyen , Tiphanie Faïs , Sébastien Massier , Nicolas Barnich
Cells, 2019, 8 (1), pp.35. ⟨10.3390/cells8010035⟩
Article dans une revue hal-02060087v1
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Intestinal Microbiota: A Novel Target to Improve Anti-Tumor Treatment?

Romain Villeger , Amélie Lopès , Guillaume Carrier , Julie Veziant , Elisabeth Billard
International Journal of Molecular Sciences, 2019, 20 (18), pp.4584. ⟨10.3390/ijms20184584⟩
Article dans une revue hal-02518541v1

T cell clonal expansions in ileal Crohn’s disease are associated with smoking behaviour and postoperative recurrence

Matthieu Allez , Claire Auzolle , Marjolaine Ngollo , Hugo Bottois , Victor Chardiny
Gut, 2019, 9 (1), pp.gutjnl-2018-317878. ⟨10.1136/gutjnl-2018-317878⟩
Article dans une revue hal-02193601v1
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Metabolic adaptation of adherent-invasive Escherichia coli to exposure to bile salts

Julien Delmas , Lucie Gibold , Tiphanie Faïs , Sylvine Batista , Martin Leremboure
Scientific Reports, 2019, ⟨10.1038/s41598-019-38628-1⟩
Article dans une revue hal-02060120v1
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Association Between Microscopic Lesions at Ileal Resection Margin and Recurrence After Surgery in Patients With Crohn’s Disease

Nassim Hammoudi , Dominique Cazals-Hatem , Claire Auzolle , Charlotte Gardair , Marjolaine Ngollo
Clinical Gastroenterology and Hepatology, 2019, ⟨10.1016/j.cgh.2019.04.045⟩
Article dans une revue hal-02193633v1
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Tissue-specific oxidative stress modulation by exercise: A comparison between MICT and HIIT in an obese rat model

Carole Groussard , Florie Maillard , E. Vazeille , Nicolas Barnich , Pascal Sirvent
Oxidative Medicine and Cellular Longevity, 2019, 2019, 11 p. ⟨10.1155/2019/1965364⟩
Article dans une revue hal-02266297v1
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Preventive Effect of Spontaneous Physical Activity on the Gut-Adipose Tissue in a Mouse Model That Mimics Crohn’s Disease Susceptibility

Florie Maillard , Emilie Vazeille , Pierre Sauvanet , Pascal Sirvent , Richard Bonnet
Cells, 2019, 8 (1), pp.33. ⟨10.3390/cells8010033⟩
Article dans une revue hal-01982430v1
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Deciphering the immune microenvironment of a tissue by digital imaging and cognition network

A. Lopès , Al H. Cassé , E. Billard , E. Boulcourt-Sambou , G. Roche
Scientific Reports, 2018, 8, pp.16692. ⟨10.1038/s41598-018-34731-x⟩
Article dans une revue hal-01926377v1
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AIEC infection triggers modification of gut microbiota composition in genetically predisposed mice, contributing to intestinal inflammation

Alexis Bretin , Cecily Lucas , Anaïs Larabi , Guillaume Dalmasso , Elisabeth Billard
Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-30055-y⟩
Article dans une revue hal-01897658v1
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Colibactin: More Than a New Bacterial Toxin

Tiphanie Faïs , Julien Delmas , Nicolas Barnich , Richard Bonnet , Guillaume Dalmasso
Toxins, 2018, 10 (4), ⟨10.3390/toxins10040151⟩
Article dans une revue hal-01796959v1

Adherent-invasive Escherichia coli in inflammatory bowel disease

Carolina Palmela , Caroline Chevarin , Zhilu Xu , Joana Torres , Gwladys Sevrin
Gut, 2018, 67 (3), pp.574-587. ⟨10.1136/gutjnl-2017-314903⟩
Article dans une revue hal-01681169v1
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Oligomannose-Rich Membranes of Dying Intestinal Epithelial Cells Promote Host Colonization by Adherent-Invasive E. coli

Tetiana Dumych , Nao Yamakawa , Adeline Sivignon , Estelle Garénaux , Stefania Robakiewicz
Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.00742⟩
Article dans une revue hal-01796957v1
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Prevalence of Yersinia Species in the Ileum of Crohn's Disease Patients and Controls

Guillaume Le Baut , Claire O'Brien , Paul Pavli , Maryline Roy , Philippe Seksik
Frontiers in Cellular and Infection Microbiology, 2018, 8, ⟨10.3389/fcimb.2018.00336⟩
Article dans une revue hal-01897651v1
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Efficient and reproducible experimental infections of rats with Blastocystis spp.

Manon Defaye , Céline Nourrisson , Elodie Baudu , Ivan Warwzyniak , Virginie Bonnin
PLoS ONE, 2018, 13 (11), pp.1-15. ⟨10.1371/journal.pone.0207669⟩
Article dans une revue hal-01931278v1

Anti-infectious properties of the probiotic Saccharomyces cerevisiae CNCM I-3856 on enterotoxigenic E. coli (ETEC) strain H10407

S. Denis , T Tsilia , N. Ballet , P. Vandekerckove , T. van de Wiele
Applied Microbiology and Biotechnology, 2018, 102 (14), pp.6175-6189. ⟨10.1007/s00253-018-9053-y⟩
Article dans une revue hal-01809200v1
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Microbial markers in colorectal cancer detection and/or prognosis

Romain Villeger , Amélie Lopès , Julie Veziant , Johan Gagniere , Nicolas Barnich
World Journal of Gastroenterology, 2018, 24 (22), pp.2327 - 2347. ⟨10.3748/wjg.v24.i22.2327⟩
Article dans une revue hal-01897664v1
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Microbiota, inflammation and colorectal cancer

Cecily Lucas , Nicolas Barnich , Hang Thi Thu Nguyen
International Journal of Molecular Sciences, 2017, 18 (6), ⟨10.3390/ijms18061310⟩
Article dans une revue hal-01608007v1
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Enterohemorrhagic Escherichia coli pathogenesis: role of Long polar fimbriae in Peyer's patches interactions

Charlotte Cordonnier , Lucie Etienne-Mesmin , Jonathan Thevenot , Amandine Rougeron , Sandra Renier
Scientific Reports, 2017, 7 (1), pp.1-14. ⟨10.1038/srep44655⟩
Article dans une revue hal-01607483v1

Adherent-Invasive E. coli enhances colonic hypersensitivity and P2X receptors expression during post-infectious period

Amandine Lashermes , Ludivine Boudieu , Julie Barbier , Benoit Sion , Agathe Gelot
Gut microbes, 2017, 9 (1), pp.26-37. ⟨10.1080/19490976.2017.1361091⟩
Article dans une revue hal-04317240v1

Interactions between microsatellite instability and human gut colonization by Escherichia coli in colorectal cancer

Johan Gagniere , Virginie Bonnin , Anne-Sophie Jarrousse , Emilie Cardamone , Allison Agus
Clinical Science, 2017, 131 (6), pp.471 - 485. ⟨10.1042/CS20160876⟩
Article dans une revue hal-01594568v1

The presence of adherent-invasive Escherichia coli strains on the surgical specimen is a predictor of severe endoscopic postoperative recurrence in Crohn's disease

N. Barnich , A. Buisson , C. Auzolle , M. Rodrigues , C. Stefanescu
Journal of Crohn's and Colitis, 2017, 11 (1), pp.S475-S476
Article dans une revue hal-03553322v1

The potential of FimH as a novel therapeutic target for the treatment of Crohn’s disease

Adeline Sivignon , Julie Bouckaert , Julien Bernard , Sebastien G. Gouin , Nicolas Barnich
Expert Opinion on Therapeutic Targets, 2017, 21 (9), pp.837 - 847. ⟨10.1080/14728222.2017.1363184⟩
Article dans une revue hal-01633566v1

Fecal Matrix Metalloprotease-9 and Lipocalin-2 as Biomarkers in Detecting Endoscopic Activity in Patients With Inflammatory Bowel Diseases

Anthony Buisson , Emilie Vazeille , Régine Minet-Quinard , Marion Goutte , Damien Bouvier
Journal of Clinical Gastroenterology, 2017, 52 (7), pp.E53-E62. ⟨10.1097/MCG.0000000000000837⟩
Article dans une revue hal-01681173v1
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Bacteriophages targeting adherent invasive Escherichia coli strains as a promising new treatment for Crohn's disease

Matthieu Galtier , Luisa de Sordi , Adeline Sivignon , Amélie de Vallée , Christel Neut
Journal of Crohn's and Colitis, 2017, Advance publication online (7), pp.840-847. ⟨10.1093/ecco-jcc/jjw224⟩
Article dans une revue pasteur-01538942v1

The Antiadhesive Strategy in Crohn′s Disease: Orally Active Mannosides to Decolonize Pathogenic Escherichia coli from the Gut

Dimitri Alvarez Dorta , Adeline Sivignon , Thibaut Chalopin , Tetiana Dumych , Goedele Roos
ChemBioChem, 2016, 17 (10), pp.936-952. ⟨10.1002/cbic.201600018⟩
Article dans une revue hal-02077036v1
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Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model

Céline Ribière , Pierre Peyret , Nicolas Parisot , Claude Darcha , Pierre Déchelotte
Scientific Reports, 2016, 6, pp.1-11. ⟨10.1038/srep31027⟩
Article dans une revue hal-02637913v1

Second generation of thiazolylmannosides, FimH antagonists for E. coli-induced Crohn's disease

T. Chalopin , D. Alvarez Dorta , Adeline Sivignon , M. Caudan , T. Dumych
Organic & Biomolecular Chemistry, 2016, 14 (16), pp.3913-3925. ⟨10.1039/c6ob00424e⟩
Article dans une revue hal-02077029v1
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Gut microbiota imbalance and colorectal cancer.

Johan Gagnière , Jennifer Raisch , Julie Veziant , Nicolas Barnich , Richard Bonnet
World Journal of Gastroenterology, 2016, 22 (2), pp.501-18. ⟨10.3748/wjg.v22.i2.501⟩
Article dans une revue pasteur-01351170v1

Macrophages Versus Escherichia coli

Anthony Buisson , Marie-Agnès Bringer , Nicolas Barnich , Emilie Vazeille
Inflammatory Bowel Diseases, 2016, 22 (12), pp.2943 - 2955. ⟨10.1097/MIB.0000000000000946⟩
Article dans une revue hal-01493355v1

The Vat-AIEC protease promotes crossing of the intestinal mucus layer by Crohn's disease-associated Escherichia coli

Lucie Gibold , Estelle Garénaux , Guillaume Dalmasso , Camille Gallucci , David Cia
Cellular Microbiology, 2016, 18 (5), pp.617 - 631. ⟨10.1111/cmi.12539⟩
Article dans une revue hal-01926372v1
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Western diet induces a shift in microbiota composition enhancing susceptibility to Adherent-Invasive E. coli infection and intestinal inflammation.

Allison Agus , Jérémy Denizot , Jonathan Thevenot , Margarita Martinez-Medina , Sébastien Massier
Scientific Reports, 2016, 6 (1), pp.19032. ⟨10.1038/srep19032⟩
Article dans une revue hal-01928173v1

Certaines bactéries de la flore commensale exacerberaient-elles la carcinogenèse colorectale ?

Jennifer Raisch , Guillaume Dalmasso , Richard Bonnet , Nicolas Barnich , Mathilde Bonnet
Médecine/Sciences, 2016, 32 (2), pp.175-82. ⟨10.1051/medsci/20163202011⟩
Article dans une revue pasteur-01351541v1

Activation of the EIF2AK4-EIF2A/eIF2 alpha-ATF4 pathway triggers autophagy response to crohn disease-associated adherent-invasive escherichia coli infection

Alexis Bretin , Jessica Carrière , Guillaume Dalmasso , Agnes Bergougnoux , Wafa B'Chir
Autophagy, 2016, 12 (5), pp.770-783. ⟨10.1080/15548627.2016.1156823⟩
Article dans une revue hal-02640052v1

GipA Factor Supports Colonization of Peyerʼs Patches by Crohnʼs Disease-associated Escherichia Coli

Emilie Vazeille , Benoit Chassaing , Anthony Buisson , Anaëlle Dubois , Amélie de Vallée
Inflammatory Bowel Diseases, 2016, 22 (1), pp.68 - 81. ⟨10.1097/MIB.0000000000000609⟩
Article dans une revue hal-01396555v1

Exosomes released from cells infected with crohn's disease-associated adherent-invasive escherichia coli activate host innate immune responses and enhance bacterial intracellular replication

Jessica Carrière , Alexis Bretin , Arlette Darfeuille-Michaud , Nicolas Barnich , - Hang Thi Thu Nguyen
Inflammatory Bowel Diseases, 2016, 22 (3), pp.516-528. ⟨10.1097/MIB.0000000000000635⟩
Article dans une revue hal-02638024v1
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Differentiation of Crohn’s Disease-Associated Isolates from Other Pathogenic Escherichia coli by Fimbrial Adhesion under Shear Force

Sabine Szunerits , Oleksandr Zagorodko , Virginie Cogez , Tetiana Dumych , Thibaut Chalopin
Biology, 2016, 5 (2), ⟨10.3390/biology5020014⟩
Article dans une revue hal-01741244v1

Faecal chitinase 3-like 1 is a reliable marker as accurate as faecal calprotectin in detecting endoscopic activity in adult patients with inflammatory bowel diseases

Anthony Buisson , E. Vazeille , R. Minet-Quinard , M. Goutte , D. Bouvier
Alimentary Pharmacology and Therapeutics, 2016, 43 (10), pp.1069-1079. ⟨10.1111/apt.13585⟩
Article dans une revue hal-02639968v1

A library of heptyl mannose-functionalized copolymers with distinct compositions, microstructures and neighboring non-sugar motifs as potent antiadhesives of type 1 piliated E. coli

Xibo Yan , Adeline Sivignon , Nicolas Barnich , Sébastien G Gouin , Julie Bouckaert
Polymer Chemistry, 2016, 7 (15), pp.2674-2683. ⟨10.1039/c6py00118a⟩
Article dans une revue hal-01396465v1

Brilliant glyconanocapsules for trapping of bacteria

Xibo Yan , Adeline Sivignon , Pierre Alcouffe , Béatrice Burdin , Sabine Favre-Bonte
Chemical Communications, 2015, 51 (67), pp.13193-13196. ⟨10.1039/c5cc04653j⟩
Article dans une revue hal-01221578v1

Glycopolymers as Antiadhesives of E. coil Strains Inducing Inflammatory Bowel Diseases

Xibo Yan , Adeline Sivignon , Nao Yamakawa , Agnès Crepet , Christophe Travelet
Biomacromolecules, 2015, 16 (6), pp.1827-1836. ⟨10.1021/acs.biomac.5b00413⟩
Article dans une revue hal-01174249v1

Erratum to : "Ribonucleotide reductase repressor NrdR as a novel regulator for motility and chemotaxis during adherent-invasive ascherichia coli Infection (vol 83, pg 1305, 2015)"

Nicolas Dreux , Maria del Mar Cendra , Sébastien Massier , Arlette Darfeuille Michaud , Nicolas Barnich
Infection and Immunity, 2015, 83 (10), pp.4174-4174. ⟨10.1128/IAI.00728-15⟩
Article dans une revue hal-02630205v1

Ribonucleotide reductase NrdR as a novel regulator for motility and chemotaxis duringadherent-invasive escherichia coli infection

Nicolas Dreux , Maria del Mar Cendra , Sébastien Massier , Arlette Darfeuille Michaud , Nicolas Barnich
Infection and Immunity, 2015, 83 (4), pp.1305-1317. ⟨10.1128/IAI.02772-14⟩
Article dans une revue hal-02640038v1
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Monocyte-derived macrophages from Crohn’s disease patients are impaired in the ability to control intracellular adherent-invasive Escherichia coli and exhibit disordered cytokine secretion profile

Emilie Vazeille , Anthony Buisson , Marie-Agnès Bringer , Marion Goutte , Lemlih Ouchchane
Journal of Crohn's and Colitis, 2015, 9 (5), pp.410-420. ⟨10.1093/ecco-jcc/jjv053⟩
Article dans une revue hal-01594239v1

Inhibition profiles of mono- and polyvalent FimH antagonists against 10 different Escherichia coli strains

T. Chalopin , Y. Brissonnet , Adeline Sivignon , D. Deniaud , L. Cremet
Organic & Biomolecular Chemistry, 2015, 13 (46), pp.11369 - 11375. ⟨10.1039/c5ob01581b⟩
Article dans une revue hal-01931394v1

Analysis of the sigma(E) Regulon in Crohn's Disease-Associated Escherichia coli Revealed Involvement of the waaWVL Operon in Biofilm Formation

Benoit Chassaing , Estelle Garénaux , Jessica Carrière , Nathalie Rolhion , Yann Guerardel
Journal of Bacteriology, 2015, 197 (8), pp.1451-1465. ⟨10.1128/JB.02499-14⟩
Article dans une revue hal-02631034v1
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Development of Heptylmannoside-Based Glycoconjugate Antiadhesive Compounds against Adherent-Invasive Escherichia coli Bacteria Associated with Crohn's Disease

Adeline Sivignon , Xibo Yan , Dimitri Alvarez Dorta , Richard Bonnet , Julie Bouckaert
mBio, 2015, 6 (6), pp.e01298-15. ⟨10.1128/mBio.01298-15⟩
Article dans une revue hal-01265411v1
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Influenza A virus infection of intestinal epithelial cells enhances the adhesion ability of Crohn's disease associated Escherichia coli strains

Marta Aleandri , Maria Pia Conte , Giovanna Simonetti , Simona Panella , Ignacio Celestino
PLoS ONE, 2015, 10 (2), ⟨10.1371/journal.pone.0117005⟩
Article dans une revue hal-02639201v1

Diet-induced hypoxia responsive element demethylation increases CEACAM6 expression, favouring Crohn's disease-associated Escherichia coli colonisation

Jérémy Denizot , Alexis Desrichard , Allison Agus , Nancy Uhrhammer , Nicolas Dreux
Gut, 2015, 64 (3), pp.428 - 437. ⟨10.1136/gutjnl-2014-306944⟩
Article dans une revue hal-01928389v1

Saccharomyces cerevisiae CNCM I-3856 Prevents Colitis Induced by AIEC Bacteria in the Transgenic Mouse Model Mimicking Crohnʼs Disease

Adeline Sivignon , Amélie de Vallée , Nicolas Barnich , Jérémy Denizot , Claude Darcha
Inflammatory Bowel Diseases, 2015, 21 (2), pp.276 - 286. ⟨10.1097/MIB.0000000000000280⟩
Article dans une revue hal-01928174v1

Toll-interacting protein modulates colitis susceptibility in mice

Michel H. Maillard , Hristina Bega , Holm H. Uhlig , Nicolas Barnich , Teddy Grandjean
Inflammatory Bowel Diseases, 2014, 20 (4), pp.660-670. ⟨10.1097/MIB.0000000000000006⟩
Article dans une revue hal-02635358v1

In Memoriam, Arlette Darfeuille-Michaud, PhD

Jennifer Raisch , Adeline Sivignon , Benoit Chassaing , Pierre Lapaquette , Sylvie Miquel
Gastroenterology, 2014, 147 (5), pp.943-944. ⟨10.1136/gutjnl-2014-308182⟩
Article dans une revue hal-01951060v1
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Understanding Host-Adherent-Invasive Escherichia coli Interaction in Crohn’s Disease: Opening Up New Therapeutic Strategies

Allison Agus , Sébastien Massier , Arlette Darfeuille-Michaud , Elisabeth Billard , Nicolas Barnich
BioMed Research International , 2014, 2014, pp.1 - 16. ⟨10.1155/2014/567929⟩
Article dans une revue hal-01931428v1
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Point Mutations in FimH Adhesin of Crohn's Disease-Associated Adherent-Invasive Escherichia coli Enhance Intestinal Inflammatory Response

Nicolas Dreux , Jérémy Denizot , Margarita Martinez-Medina , Alexander Mellmann , Maria Billig
PLoS Pathogens, 2013, 9 (1), pp.e1003141. ⟨10.1371/journal.ppat.1003141⟩
Article dans une revue hal-01928191v1

E. coli-mediated gut inflammation in genetically predisposed Crohn's disease patients

N. Barnich , Jérémy Denizot , A. Darfeuille-Michaud
Pathologie Biologie, 2013, 61 (5), pp.e65 - e69. ⟨10.1016/j.patbio.2010.01.004⟩
Article dans une revue hal-01928194v1

Chitin-binding domains of Escherichia coli ChiA mediate interactions with intestinal epithelial cells in mice with colitis

Daren Low , Hoa T. Tran , In-Ah Lee , Nicolas Dreux , Alan Kamba
Gastroenterology, 2013, 145 (3), pp.602-612. ⟨10.1053/j.gastro.2013.05.017⟩
Article dans une revue hal-02651692v1
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Comparative genomics of Crohn's disease-associated adherent-invasive Escherichia coli

Claire L O'Brien , Marie-Agnès Bringer , Kathryn E Holt , David M Gordon , Anaëlle L Dubois
Gut, 2013, 66 (8), pp.1382-1389. ⟨10.1136/gutjnl-2015-311059⟩
Article dans une revue hal-01393979v1

Western diet induces dysbiosis with increased E coli in CEABAC10 mice , alters host barrier function favouring AIEC colonisation

Margarita Martinez-Medina , Jérémy Denizot , Nicolas Dreux , Frédéric Robin , Elisabeth Billard
Gut, 2013, 63 (1), pp.116 - 124. ⟨10.1136/gutjnl-2012-304119⟩
Article dans une revue hal-01928324v1

Transient Inability to Manage Proteobacteria Promotes Chronic Gut Inflammation in TLR5-Deficient Mice

Frederic A. Carvalho , Omry Koren , Julia K. Goodrich , Malin E. V. Johansson , Ilke Nalbantoglu
Cell Host and Microbe, 2012, 12 (2), pp.139 - 152. ⟨10.1016/j.chom.2012.07.004⟩
Article dans une revue hal-02652647v1
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Importance of Bacteria as Trigger in Inflammatory Bowel Disease

Jérémy Denizot , Nicolas Dreux , Arlette Darfeuille-Michaud , Nicolas Barnich
Journal of Gastrointestinal & Digestive System, 2012, 01, pp.S8. ⟨10.4172/2161-069x.s8-003⟩
Article dans une revue hal-01928200v1

Adherent-Invasive Escherichia coli Induce Claudin-2 Expression and Barrier Defect in CEABAC10 Mice and Crohnʼs Disease Patients

Jérémy Denizot , Adeline Sivignon , Frederick Barreau , Claude Darcha , Carlos H.F. Chan
Inflammatory Bowel Diseases, 2012, 18 (2), pp.294 - 304. ⟨10.1002/ibd.21787⟩
Article dans une revue hal-01928192v1

Adherent-invasive Escherichia coli phenotype displayed by intestinal pathogenic E. coli strains from cats, dogs, and swine

Margarita Martinez-Medina , Jesús García-Gil , Nicolas Barnich , Lothar H. Wieler , Christa Ewers
Applied and Environmental Microbiology, 2011, 77 (16), pp.5813 - 5817. ⟨10.1128/AEM.02614-10⟩
Article dans une revue hal-02653076v1
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Abnormally expressed ER stress response chaperone Gp96 in CD favours adherent-invasive Escherichia coli invasion

Nathalie Rolhion , Nicolas Barnich , Marie-Agnès Bringer , Anne-Lise Glasser , Julien Ranc
Growth Development and Aging, 2010, 59 (10), pp.1355-1362. ⟨10.1136/gut.2010.207456⟩
Article dans une revue hal-01218270v1
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Crohn's disease adherent-invasive Escherichia coli colonize and induce strong gut inflammation in transgenic mice expressing human CEACAM

Frédéric A Carvalho , Nicolas Barnich , Adeline Sivignon , Claude Darcha , Carlos H F Chan
Journal of Experimental Medicine, 2009, 206 (10), pp.2179 - 2189. ⟨10.1084/jem.20090741⟩
Article dans une revue hal-01931313v1
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Role of bacteria in the etiopathogenesis of inflammatory bowel disease

Nicolas Barnich , Arlette Darfeuille-Michaud
World Journal of Gastroenterology, 2007, 13 (42), pp.5571-5576
Article dans une revue hal-02669138v1

Adherent-invasive Escherichia coli and Crohn's disease

Nicolas Barnich , Arlette Darfeuille-Michaud
Current Opinion in Gastroenterology, 2007, 23 (1), pp.16-20
Article dans une revue hal-02666277v1

Lactobacillus acidophilus modulates intestinal pain and induces opioid and cannabinoid receptors

Christel Rousseaux , Xavier Thuru , Agathe Gelot , Nicolas Barnich , Christel Neut
Nature Medicine, 2007, 13 (1), pp.35-37. ⟨10.1038/nm1521⟩
Article dans une revue hal-02667010v1

CEACAM6 acts as a receptor for adherent-invasive E. coli, supporting ileal mucosa colonization in Crohn disease

Nicolas Barnich , Frederic A. Carvalho , Anne-Lise Glasser , Claude Darcha , Peter Jantscheff
Journal of Clinical Investigation, 2007, 117 (6), pp.1566-1574. ⟨10.1172/JCI30504⟩
Article dans une revue hal-02666899v1

Strong decrease in invasive ability and outer membrane vesicle release in Crohn's disease-associated adherent-invasive Escherichia coli strain LF82 with the yfgL gene deleted

Nathalie Rolhion , Nicolas Barnich , Laurent Claret , Arlette Darfeuille-Michaud
Journal of Bacteriology, 2005, 187 (7), pp.2286-2296. ⟨10.1128/JB.187.7.2286-2296.2005⟩
Article dans une revue hal-02681129v1
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HtrA Stress Protein Is Involved in Intramacrophagic Replication of Adherent and Invasive Escherichia coli Strain LF82 Isolated from a Patient with Crohn's Disease

Marie-Agnès Bringer , Nicolas Barnich , Anne-Lise Glasser , Olivier Bardot , Arlette Darfeuille-Michaud
Infection and Immunity, 2005, 73 (2), pp.712 - 721. ⟨10.1128/IAI.73.2.712-721.2005⟩
Article dans une revue hal-01917182v1

Involvement of lipoprotein NlpI in the virulence of adherent invasive Escherichia coli strain LF82 isolated from a patient with Crohn's disease

Nicolas Barnich , Marie-Agnès Bringer , Laurent Claret , Arlette Darfeuille-Michaud
Infection and Immunity, 2004, 72 (5), pp.2484-2493. ⟨10.1128/IAI.72.5.2484-2493.2004⟩
Article dans une revue hal-02678710v1

High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn's disease

Arlette Darfeuille-Michaud , Jerome Boudeau , Philippe Bulois , Christel Neut , Anne-Lise Glasser
Gastroenterology, 2004, 127 (2), pp.412-421. ⟨10.1053/j.gastro.2004.04.061⟩
Article dans une revue hal-02683150v1

Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease

Arlette Darfeuille-Michaud , Christel Neut , Nicolas Barnich , Emmanuel Lederman , Patrick Di Martino
Gastroenterology, 1998, 115 (6), pp.1405-1413. ⟨10.1016/S0016-5085(98)70019-8⟩
Article dans une revue hal-01951145v1
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Impact of concurrent training (HIIT + RT) on body composition and gut microbiota in postmenopausal women with overweight or obesity

Marine Dupuit , Mélanie Rance , Claire Morel , Patrice Bouillon , Audrey Boscaro
International Workshop Female Physiology and Metabolism, Laurie Isacco - Laboratoire AME2P, Université Clermont Auvergne, May 2023, Clermont Ferrand (FR), France
Communication dans un congrès hal-04420996v1

Role of adherent and invasive E. coli in Crohn's Disease: Lessons from the postoperative recurrence model

Anthony Buisson , Harry Sokol , Nassim Hammoudi , Stéphane Nancey , Xavier Treton
17. Congress of ECCO, European Crohn’s and Colitis Organisation, Feb 2022, Virtual, Austria
Communication dans un congrès hal-03665870v1

Effects of High-intensity interval training associated with a complementation of flaxseed oil on body composition and metabolic profile in obese rats.

Claire Plissonneau , Frédéric Capel , Benoit Chassaing , Marine Dupuit , Florie Maillard
25th European Congress of Sport Sciences, Sep 2021, Séville, Spain
Communication dans un congrès hal-03461991v1

Beneficial effect of linseed on the intestinal mucosa associated microbiota to prevent inflammatory and metabolic chronic diseases

Claire Plissonneau , Benoit Chassaing , Frédéric Capel , Guillaume Mairesse , Guillaume Chesneau
12. International Symposium on Gut Microbiology, INRAE ; Rowett Institute UK, Oct 2021, En ligne, France
Communication dans un congrès hal-03394821v1

High-intensity interval training and α-linolenic acid supplementation improve DHA conversion and increase the abundance of gut mucosa-associated Oscillospira bacteria.

Claire Plissonneau , Frédéric Capel , Benoit Chassaing , Marine Dupuit , Florie Maillard
Comité scientifique de l’association Bleu-Blanc-Coeur, May 2021, Clermont-Ferrand, France
Communication dans un congrès hal-03461962v1

Association of High-intensity interval training and linseed oil supplementation change the β-diversity of the gut mucosa-associated microbiota and increase the relative abundance of Oscillospira

Claire Plissonneau , Frédéric Capel , Benoit Chassaing , Marine Dupuit , Florie Maillard
17ème Journée des microbiologistes Clermontois, May 2021, Clermont-Ferrand, France
Communication dans un congrès hal-03461939v1

HIIT and flaxseed oil association promote n-3 PUFAs derivatives conversion and modulate gut microbiota composition

Claire Plissonneau , Frédéric Capel , Benoit Chassaing , Marine Dupuit , Florie Maillard
ACAPS, Oct 2021, Montpellier, France
Communication dans un congrès hal-03462012v1

Anti-TNF agents restrict adherent-invasive E. coli replication within macrophages through modulation of chitinase 3-like 1 in patients with Crohn’s disease.

C Douadi , Vazeille E. , Christophe Chambon , Michel Hébraud , M Dodel
Digestive Disease Week, May 2021, San Diego, United States
Communication dans un congrès hal-03417006v1

High-intensity interval training and α-linolenic acid supplementation improve DHA conversion and increase the abundance of gut mucosa-associated Oscillospira bacteria.

Claire Plissonneau , Frédéric Capel , Benoit Chassaing , Marine Dupuit , Florie Maillard
Journées de l'Ecole Doctorale, May 2021, Clermont-Ferrand, France
Communication dans un congrès hal-03461979v1

The IL-22 pathway as target to relieve visceral pain and animal well-being

Maeva Meynier , Elodie Baudu , Manon Defaye , Y Wawzyniak , Frederic Delbac
ICTRHN, Jun 2020, Clermont-Ferrand, France
Communication dans un congrès hal-02524613v1

Multicenter randomized double-blind cinical trial assessing the benefit of adherent-invasive E. coli eradication in adult ileal and ileo-colonic Crohn disiease: the teorem trial

F. Carbonel , Emilie Vazeille , J Filippi , Y Bouhnik , J Moreau
CCFA, Sep 2020, WASHINGTON, United States
Communication dans un congrès hal-03053695v1

Quantitative proteomics analysis of macrophages from Crohn's disease patients and infected with adherents-invasife E. coli

Clara Douadi , Emilie Vazeille , Christine Chambon , Michel Hébraud , Marie Dodel
ECCO, Feb 2020, VIENNE, Austria
Communication dans un congrès hal-03043309v1

Non-invasive identification of adherent-invasive E. coli in patients with Crohn's disease

Anthony Buisson , Emilie Vazeille , Xavier Hébuterne , Mathurin Fumery , Benjamin Pariente
DDW 2020, May 2020, CHICAGO, United States. pp.S044-S045
Communication dans un congrès hal-03043456v1

Identification of EMP2 gene as a new therapeutic target to limit AIEC colonization in CD patients

Mélissa Chervy , Nicolas Barnich , Jérémy Denizot
UEGW 2020, Oct 2020, AMSTERDAM, France
Communication dans un congrès hal-03046335v1

Tryptophan derivatives effects via the AhR signaling pathway modulation on host disturbances after a Citrobacter rodentium infection

Maeva Meynier , Elodie Baudu , Nicolas Barnich , Denis Ardid , Jean-Marc Chatel
CELL SYMPOSIA, May 2020, PARIS, France
Communication dans un congrès hal-03045712v1

Epithelial to mesenchymal transition in response to E. coli-induced senescence-associated secretory phenotype induced chemotherapeutic drug resistance

Guillaume Dalmasso , Tiphanie Faïs , Anthony Cougnoux , Nicolas Barnich , Julien Delmas
DDW 2020, May 2020, Chicago, United States
Communication dans un congrès hal-02524390v1

Colibactin-producing E. coli induces a metabolic reprogramming of colonic epithelial cells toward a pro-carcinogenic metabolism

Romain Villeger , Binta Dieme , Marie Lagree , Julien Delmas , Gwenaëlle Roche
UEGW 2020, Oct 2020, AMSTERDAM, Netherlands
Communication dans un congrès hal-03046835v1

Autophagy inhibits colorectal carcinogenesis induced by colibactin-producing escherichia coli

Cecily Lucas , Laurène Salesse , My Hanh Thi Hoang , Mathilde Bonnet , Pierre Sauvanet
Digestive Disease Week (DDW), May 2020, Chicago, United States
Communication dans un congrès hal-02527278v1

Colorectal cancer associated-E. coli induce the emergence of chemotherapy-resistant stem cell-like phenotype of host cells

Guillaume Dalmasso , Anthony Cougnoux , Tiphanie Faïs , Hang T.T. Nguyen , Nicolas Barnich
DDW2020, May 2020, Chicago, United States
Communication dans un congrès hal-02524369v1

Etude de la valeur pronostique de facteurs innovants (microbiote intestinal, sarcopénie, obésité, syndrome métabolique) sur les résultats chirurgicaux du cancer colorectal

Karine Poirot , Julie Veziant , Caroline Chevarin , Lucie Cassagnes , Pierre Sauvanet
4ème assises régionales de nutrition et santé, Sep 2019, LYON, France
Communication dans un congrès hal-02393056v1

Adaptation of the pathobionte adherent-invasive E. coli to gut environnment in the context of Crohn's disease

Nicolas Barnich
Global Summit on Microbiology and Virology, Mar 2019, PRAGUE, Czech Republic
Communication dans un congrès hal-02148374v1

Adaptation of the adherent-invasive E. coli pathobiont ton gut environment in the context of intestinal inflammation

Nicolas Barnich , Gwladys Sevrin , Lucie Gibold , Richard Bonnet , Julien Delmas
15e congrès national de la SFM, Sep 2019, PARIS, France
Communication dans un congrès hal-02196749v1

Impact du régime alimentaire occidental sur l'activation des cellules T dans les ganglions mésentériques chez la souris

Elisabeth Billard , Pierre Boccon , Mathilde Pugeat , Allison Agus , Margarita Martinez-Medina
4èmes Assises Régionales de Nutrition et Santé, Sep 2019, LYON, France
Communication dans un congrès hal-02196877v1

Effet des souches d’E. coli pathogènes sur les défense antioxydantes des entérocytes et impact sur la carcinogenèse colique: approche microscopique

Romain Villéger , Gwenaelle Roche , Johan Gagniere , Julien Delmas , Denis Pezet
Journée des Microscopistes Clermontois, Oct 2019, Clermont Ferrand, France
Communication dans un congrès hal-02524692v1

IMPACTS OF ADDITIVE FOOD E171 (TITANIUM DIOXIDE) ON THE GUT MICROBIOTA AND COLORECTAL CARCINOGENESIS IN APCMIN/+ MURINE MODEL

Sandrine Brugiroux , Thomas Sauvaitre , Gwenaelle Roche , Célia Ledieu , Caroline Chevarin
Digestive Disease Week 2019, May 2019, San Diego, United States
Communication dans un congrès hal-02307701v1

Colorectal cancer associated-E. coli induce the emergence of chemotherapy-resistant stem cell-like phenotype of host cells

Guillaume Dalmasso , Antony Cougnoux , Tiphanie Faïs , Nicolas Barnich , Julien Delmas
15eme congrès national de la SFM, Sep 2019, Paris, France
Communication dans un congrès hal-02338700v1

Colorectal cancer associated-E. coli induce the emergence of chemotherapy-resistant stem clell-like phenotype of host cells

Guillaume Dalmasso , Anthony Cougnoux , Tiphanie Faïs , Nicolas Barnich , Julien Delmas
15e congrès national de la SFM, Sep 2019, PARIS, France
Communication dans un congrès hal-02196753v1

Adaptation of the pathobionte adherent-invasive E. coli to gut environment in the context of Crohn’s disease

Nicolas Barnich
Global Summit on Microbiology and Virology, Mar 2019, Prague, Czech Republic
Communication dans un congrès hal-02524407v1

Microbiota & Cancer: Between detection and prognosis

Romain Villéger , Amélie Lopès , Guillaume Pierre Carrier , Gwenaëlle Roche , Johan Gagniere
7th World Congress on Targeting Microbiota, Oct 2019, Cracovie, Poland
Communication dans un congrès hal-02524746v1

Impact du microbiote en Médecine

Nicolas Barnich
Journées de la Société Française de Neurologie Pédiatrique, May 2019, Clermont-Ferrand, France
Communication dans un congrès hal-02526081v1

Adaptation of the adherent-invasive E. coli pathobiont to gut environment in the context of intestinal inflammation

Nicolas Barnich , Gwladys Sevrin , Lucie Gibold , Richard Bonnet , Julien Delmas
15eme congres national de la SFM, Sep 2019, Paris, France
Communication dans un congrès hal-02338659v1

Epithelial to mesenchymal transition in response to E. coli-induced senescence-associated secretory phenotype induced chemotherapeutic drug resistance

Guillaume Dalmasso , Tiphanie Faïs , A Cougnoux , Nicolas Barnich , Julien Delmas
15. Congrès national de la SFM, Sep 2019, Paris, France
Communication dans un congrès hal-02524334v1

Comparison between faecal chitinase 3-like 1, matrix metalloprotease 9, and calprotectin to assess mucosal healing in Crohn's disease: a multicentre prospective study

A. Buisson , Mathurin Fumery , X. Hébuterne , B. Pariente , S. Nancey
Congress of ECCO - European Crohn's and Colitis Organisation, 2018, Oxford, United Kingdom
Communication dans un congrès hal-02734069v1

The presence of adherent-invasive Escherichia coli strains on the surgical specimen is a predictor of severe endoscopic postoperative recurrence in Crohn's disease

N. Barnich , Anthony Buisson , Claire Auzolle , M. Rodrigues , Carmen Stefanescu
12. Congress of ECCO, European Crohn's and Colitis Organisation, Feb 2017, Barcelone, Spain
Communication dans un congrès hal-03553323v1

Physiochemical tuning of potent escherichia coli anti-adhesives by microencapsulation and methylene homologation

Dimitri Alvarez Dorta , Thibaut Chalopin , Adeline Sivignon , Jerome de Ruyck , Tetiana I. Dumych
52. International Conference on Medicinal Chemistry (RICT) of the French-Medicinal-Chemistry-Society (SCT) - Interfacing Chemical Biology and Drug Discovery, Jul 2016, Caen, France. pp.13, ⟨10.1002/cmdc.201700061⟩
Communication dans un congrès hal-01607981v1

Faecal metalloprotease 9 is a reliable biomarker compared with faecal calprotectin in detecting endoscopic activity in patients with inflammatory bowel diseases

Alain Buisson , Emilie Vazeille , R. M. Quinard , Marion Goutte , D. Bouvier
11. Congress of ECCO - European Crohn's and Colitis Organisation, 2016
Communication dans un congrès hal-02739827v1

Impact of western diet on short-chain fatty acids production and host susceptibility to intestinal inflammation in a context of Crohn's disease

Allison Agus , Jérémy Denizot , Jonathan Thevenot , Sébastien Massier , Sylvain Denis
10. Congress of the European Crohn's and Colitis Organisation (ECCO) Inflamatory Bowel Diseases, European Crohn´s and Colitis Organisation (ECCO). INT., Feb 2015, Barcelona, Spain
Communication dans un congrès hal-02740401v1

Mo1770 Gipa factor supports Crohn's disease-associated Escherichia Coli growth in Peyer's patches by providing resistance to bactericidal stress encountered in macrophages

Emilie Vazeille , Benoit Chassaing , Anthony Buisson , Anaëlle Dubois , Amélie de Vallée
Digestive Disease Week (DDW), May 2015, Philadelphia, United States. ⟨10.1016/S0016-5085(15)32400-8⟩
Communication dans un congrès hal-01247407v1

Predictors of post-operative endoscopic recurrence in Crohn's disease: a prospective study of the REMIND group

Matthieu Allez , Carmen Stefanescu , Stéphane Nancey , Anthony Buisson , Pierre Desreumaux
10. Congress of ECCO, European Crohn's and Colitis Organisation, Feb 2015, Barcelone, Spain. ⟨10.1093/ecco-jcc/jju027.076⟩
Communication dans un congrès hal-03553417v1

Crohn's disease-associated adherent-invasive Escherichia coli induce secretion of exosomes with pro-inflammatory activity by intestinal epithelial cells

Jessica Carrière , Alexis Bretin , Nicolas Barnich , Hang Thi Thu Nguyen
10. Congress of the European Crohn's and Colitis Organisation (ECCO) Inflamatory Bowel Diseases, European Crohn´s and Colitis Organisation (ECCO). INT., Feb 2015, Barcelona, Spain
Communication dans un congrès hal-02740399v1

Involvement of type VI secretion systems in virulence of adherent-invasive Escherichia coli isolated from patients with Crohn's disease

Sébastien Massier , Sylvie Miquel , Nicolas Dreux , Allison Agus , S. Bouhours
10. Congress of ECCO. Inflammatory Bowel Diseases, ECCO European Crohn's and Colitis Organization., Feb 2015, Barcelona, Spain
Communication dans un congrès hal-02739694v1

Implication de HtrA dans la multiplication en macrophages J774-A1 de la souche de Escherichia coli adhérente et invasive LF82 associée à la maladie de Crohn

Marie-Agnès Bringer , Nicolas Barnich , Anne-Lise Glasser , Olivier Bardot , Christine Martin
Société Française de Microbiologie, May 2004, Bordeaux, France
Communication dans un congrès hal-02831628v1

Adherent-invasive Escherichia coli: a putative new Escherichia coli pathotype associated with Crohn’s disease

Jerome Boudeau , Nicolas Barnich , Marie-Agnès Bringer , Anne-Lise Glasser , Arlette Darfeuille-Michaud
The World of Microbes, International Union of Microbiological Societies, Jul 2002, Paris, France
Communication dans un congrès hal-02831629v1

Anti-TNF agents restrict adherent-invasive E. coli replication within macrophages through modulation of chitinase 3-like 1 in patients with Crohn’s disease

Clara Douadi , Emilie Vazeille , C Chambon , Michel Hébraud , Margot Fargeas
DDW 2021 (Digestive Disease Week 2021), May 2021, Washington, United States. Gastroenterology, 160 (6, Supplement 1), pp.S-538-S-538, 2021, DDW 2021 Abstracts, March 21-23, 2021
Poster de conférence hal-03737896v1

Beneficial Effects of Linseed Diet-supplementation and Spontaneous Physical activity on Inflammation and the Mucosa-Associated Microbiota.

Claire Plissonneau , Adeline Sivignon , Benoit Chassaing , Frédéric Capel , Martin Vincent
UEGW, Oct 2021, Virtual, France
Poster de conférence hal-03462036v1

Quantitative proteomic analysis of macrophages from Crohn’s disease patients and infected with adherent-invasive Escherichia coli: impact of anti-TFA treatment

C Douadi , Christophe Chambon , Michel Hébraud , Brigitte Pereira , Martin Dodel
Digestive Disease Week (DDW), May 2020, Chicago, United States
Poster de conférence hal-03243461v1

Impact of anti-TNF-a agents on macrophages response to adherent-invasive Escherichia coli infection in patients with crohn's disease

Clara Douadi , Emilie Vazeille , Michel Hébraud , Marie Dodel , Dilek Coban
UEGW 2020, Oct 2020, AMSTERDAM, Netherlands
Poster de conférence hal-03046794v1

Le gène de résistance mcr-1 favorise l'intrusion de E. coli dans l'écosystème intestinal

Guillaume Dalmasso , Racha Beyrouthy , Sandrine Brugiroux , Pierre Saint-Sardos , Etienne Ruppé
RICAI 2020, Dec 2020, PARIS, France
Poster de conférence hal-03054071v1

Effects of high-intensity interval training associated with a complementation of flaxseed oil on body composition and metabolic profile in obese rats

Claire Plissonneau , Florie Maillard , F Capel , Lydie Combaret , Frédéric Dutheil
25. Annual Congress of the European College of Sports Science (ECSS 2020), Oct 2020, Séville, Spain.
Poster de conférence hal-03054001v1

Quantitative proteomic analysis of macrophages from Crohn's disease patients and infected with adherent-invasive Escherichia coli : impact of anti-treatment

Clara Douadi , Emilie Vazeille , Christophe Chambon , Michel Hébraud , Marie Dodel
DDW 2020, May 2020, CHICAGO, United States
Poster de conférence hal-03043423v1

Saccharomyces cerevisiae, candida albicans and adherent-invasive escherichia coli (AIEC) intestinal colonization is not associated with asca detection in Crohn's disease

Caroline Chevarin , S Mondot , H. Sarter , Marjorie Cornu , Iman Salem
UEGW 2020, Oct 2020, AMSTERDAM, Netherlands
Poster de conférence hal-03046747v1

Novel approach to bind and specifically detect FIMH-expressing E. coli using heptylmannose-functionalized cellulose in the context of Crohn's disease

Adeline Sivignon , Antoine Chaprenet , Francois-Xavier Felpin , Julie Bouckaert , Sebastien G. Gouin
UEGW 2020, Oct 2020, AMSTERDAM, France
Poster de conférence hal-03046355v1

Quantitative proteomic analysis of macrophages from Crohn's disease patients and infected with adherent-invasive Escherichia coli : impact of anti-TNFa treatment

Clara Douadi , Emilie Vazeille , Christophe Chambon , Michel Hébraud , Marie Dodel
JED 2020, Sep 2020, CLERMONT FERRAND, France
Poster de conférence hal-03045978v1

Novel approach to bind and specifically detect FimH-expressing E. coli using heptylmannose-functionalized cellulose

Adeline Sivignon , Antoine Chaprenet , François-Xavier Felpin , Julie Bouckaert , Nicolas Barnich
DDW 2020, May 2020, CHICAGO, United States
Poster de conférence hal-03043378v1

Dietary emulsifiers directly impact adherent-invasive E. coli to drive chronic intestinal inflammation

Emilie Viennois , Alexis Bretin , P Dube , Alexander Maue , Nicolas Barnich
UEGW 2020, Oct 2020, AMSTERDAM, Netherlands
Poster de conférence hal-03046325v1

Effects of tryptophan derivatives via the AHR/Il22 signaling pathway modulation on host disturbances in post citrobacter rodentium infection model mimicking irritable bowel syndrome

Maeva Meynier , Elodie Baudu , Nicolas Barnich , Denis Ardid , J.M. Chatel
UEGW 2020, Oct 2020, AMSTERDAM, Netherlands
Poster de conférence hal-03046872v1

Cellulose fonctionnalisée par un heptil-mannose: un nouvel outil thérapeutique et diagnostic ciblant les Escherichia coli adhérents et invasifs

Adeline Sivignon , Madeleine Cauwel , Clarisse Bridot , Medy C. Nongbe , Sebastien G. Gouin
15e congrès naional de la SFM, Sep 2019, PARIS, France
Poster de conférence hal-02196790v1

Pathogenic E. coli induces a metabolic reprogramming in colonic epithelial cells through the production of colibactin

Romain Villeger , Binta Diémé , Marie Lagrée , Julien Delmas , Gwenaëlle Roche
DDW, May 2019, SAN DIEGO, United States
Poster de conférence hal-02148411v1

Pathogenic E. coli induces a metabolic reprogramming in colonic epithelial cells through the production of colibactin.

R. Villeger , B. Dieme , M. Lagree , J. Delmas , G. Roche
12èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, May 2019, Clermont-Ferrand, France
Poster de conférence hal-02288953v1

Exosomes released from intestinal epithelial cells infected with Crohn's disease-associated adherent-invasive E. coli transfer miRNAs into recipient cells to inhibit autophagy

Anaïs Larabi , Guillaume Dalmasso , Julien Delmas , Nicolas Barnich , Hang Thi Thu Nguyen
Congres KEYSTONE, Mar 2019, MONTREAL, Canada
Poster de conférence hal-02393855v1

Pathogenic E. coli induces a metabolic reprogramming in colonic epithelial cells through the production of colibactin

Romain Villéger , Binta Diémé , Marie Lagree , Gwenaëlle Roche , Julien Delmas
12èmes Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique,, May 2019, Clermont-Ferrand, France
Poster de conférence hal-02527848v1

Impacts of additive food E171 (titanium dioxide) on the gut microbiota and colorectal carcinogenesis in APC min/+ murine model

Sandrine Brugiroux , Thomas Sauvaitre , Gwenaelle Roche , Célia Ledieu , Caroline Chevarin
DDW, May 2019, SAN DIEGO, United States
Poster de conférence hal-02148515v1

Adherent-invasive Escherichia coli in inflammatory bowel disease impacts fecal microbiota transplantation efficacy by hindering engraftment of beneficial bacteria

Zhilu Xu , Jingwan Zhang , Tao Zuo , Caroline Chevarin , Lok Cheung
DDW2019, May 2019, SAN DIEGO, United States
Poster de conférence hal-02338765v1

Impacts of additive food E171 (titanium dioxide) on the gut microbiota and colorectal carcinogenesis in APCmin/+ murine model

Sandrine Brugiroux , Thomas Sauvaitre , Gwenaelle Roche , Célia Ledieu , Caroline Chevarin
Digestive Disease Week (DDW), May 2019, San Diego, United States
Poster de conférence hal-02527818v1

Infection by pathogenic E. coli induces a metabolic reprogramming of colonic epithelial cells in a colibactin-dependent manner

Romain Villéger , Binta Diémé , Marie Lagree , Gwenaëlle Roche , Julien Delmas
Digestive Disease Week (DDW), May 2019, San Diego, United States
Poster de conférence hal-02527794v1

High methyl diet impair E. coli overgrowth, limits AIEC colonization and inflammation by epigenentic regulation of genes expression

Nicolas Barnich , Jérémy Denizot , Allison Agus
DDW, May 2019, SAN DIEGO, United States
Poster de conférence hal-02187861v1

Role of Adherent-invasive Escherichia coli in inflammatory bowel disease - epidemiology, genetics and therapeutics

Zhilu Xu , Jingwan Zhang , Tao Zuo , Caroline Chevarin , Lok Cheung Chu
IDDF, Jun 2019, Hong Kong, China
Poster de conférence hal-02338902v1

Cellulose fonctionnalisée par un heptyl-mannose: un nouvel outil thérapeutique et diagnostic ciblant les Escherichia coli adherents et invasifs

Adeline Sivignon , Madeleine Cauwel , Clarisse Bridot , Medy C. Nongbe , David Deniaud
15eme congres national de la SFM, Sep 2019, Paris, France
Poster de conférence hal-02338687v1

Infection by pathogenic E. coli induces a metolic reprogramming of colonic epithelial cells in a colibactin-dependent manner

Romain Villeger , Binta Diémé , Marie Lagrée , Gwenaëlle Roche , Julien Delmas
DDW, May 2019, SAN DIEGO, United States
Poster de conférence hal-02148433v1

Adherent-invasive Escherichia coli in inflammatory bowel disease impacts fecal microbiota transplatation efficacy by hindering engraftment of beneficial bacteria

Zhilu Xu , Jingwan Zhang , Tao Zuo , Caroline Chevarin , Lok Cheung
ECCO 2019, Mar 2019, COPENHAGUE, Denmark
Poster de conférence hal-02338806v1

Adherent-invasive Escherichia coli colonization promotes intestinal fibrosis via activation of IL-32-ST2 signaling

Jim Imai , Sho Kitamoto , Atsushi Hayashi , Kohei Sugihara , Tina L.
DDW 2019, May 2019, SAN DIEGO, United States
Poster de conférence hal-02390424v1

Effet préventif de l’activité physique sur l’interaction tissu adipeux – microbiote intestinal chez des souris CEABAC10 exposées à la souche AIEC LF82

F. Maillard , E. Vazeille , P. Sauvanet , P Sirvent , R. Bonnet
JFHOD 2018, Journées Francophones d’Hépato-Gastroentérologie et d’Oncologie Digestive, Mar 2018, Paris, France. 2018
Poster de conférence hal-01807566v1

Macrophages from Crohn's disease patients showed a defect to control adherent-invasive Escherichia coli replication influenced by genetic host factors

A. Buisson , Emilie Vazeille , L. Ouchchane , Marion Goutte , J. -P. Hugot
12. Congress of ECCO 2017, Feb 2017, Barcelone, Spain. Oxford University Press, Journal of Crohn's and Colitis, 11, 2017
Poster de conférence hal-02734052v1

Microbiota diversity at time of surgery predict endoscopic recurrence in Crohn's disease: results of a prospective study of the REMIND group

Harry Sokol , L. Brot , C. Stefanescu , C. Auzolle , Nicolas Barnich
Advances in inflammatory bowel diseases, 2017, Vienne, Australia. OXFORD UNIV PRESS, Journal of Crohn's and Colitis, 11, pp.1, 2017, Journal of Crohn's and Colitis
Poster de conférence hal-01600722v1

Autophagy inhibits DNA damage induced by colorectal cancer-associated Escherichia coli

Cecily Lucas , Guillaume Dalmasso , Pierre Sauvanet , Denis Pezet , Nicolas Barnich
CFATG, Oct 2017, BORDEAUX, France
Poster de conférence hal-01631705v1

Activation of the EIF2AK4-EIF2A/eIF2 alpha-ATF4 pathway triggers autophagy response to Crohn disease-associated adherent-invasive escherichia coli infection

Alexis Bretin , Jessica Carrière , Guillaume Dalmasso , Agnes Bergougnoux , Wafa B'Chir
7. Proteasomes and Autophagy Workshop, Apr 2016, clermont-ferrand, France. 320 p., 2016, 7th Proteasomes and Autophagy Workshop
Poster de conférence hal-02740425v1

Faecal chitinase 3-like 1 is a reliable marker as accurate as faecal calprotectin in detecting endoscopic activity in adult patients with inflammatory bowel diseases

Anthony Buisson , Emilie Vazeille , Régine Minet-Quinard , Marion Goutte , D. Bouvier
11. Congress of European Crohn's and Colitis Organisation, Mar 2016, Amsterdam, Netherlands. Journal of Crohn's and Colitis, 10, 2016, Journal of Crohn's and Colitis
Poster de conférence hal-01602902v1

Impact of intestinal dysbiosis on mouse models of colonic hypersensitivity

F. Carvalho , A. Lashermes , S. Miquel , Rebeca Martin Rosique , A. Gelor
NeuroGASTRO 2015, Jun 2015, Istanbul, Turkey. John Wiley and Sons, Neurogastroenterology and Motility, 27 (Suppl. S2), 2015, Neurogastroenterology and Motility
Poster de conférence hal-01535295v1

Activation of the GCN2/eIF2alpha/ATF4 signaling pathway triggers autophagy response to infection with Crohn's disease-associated adherent-invasive Escherichia coli

A. Bretin , J. Carrière , Marion Dalmasso , N. Barnich , A. Bergougnoux
10. Congress of ECCO. Inflammatory Bowel Diseases, Feb 2015, Barcelone, Spain. , Journal of Crohn's and Colitis, 9, 2015, 10th Congress of ECCO. Inflammatory Bowel Diseases
Poster de conférence hal-02740431v1

Induction of mu opioid and cannabinoid receptors by probiotics: A new mechanism of regulation of visceral pain perception

C. Rousseaux , Xavier Thuru , A. Gelot , N. Barnich , C. Neut
5. Annual Advances in the Inflammatory Bowel Diseases, Dec 2006, Miami (Florida), United States. 13 (Supplement 5), pp.652-653, 2007, Abstracts from the 2006 CCFA National Research and Clinical Conference, 5th Annual Advances in the Inflammatory Bowel Diseases, Dec. 1‐3, 2006, Miami, FL. ⟨10.1097/00054725-200705001-00035⟩
Poster de conférence hal-02873654v1

Implication de HtrA dans la multiplication en macrophages J774-A1 de la souche de Escherichia coli adhérente et invasive LF82 associée à la maladie de Crohn

Marie-Agnès Bringer , Nicolas Barnich , Anne-Lise Glasser , Olivier Bardot , Christine Martin
Société Française de Microbiologie, May 2004, Bordeaux, France. 1 p., 2004
Poster de conférence hal-02828372v1

Identification of DNA sequence specific for adherent-invasive E. coli (AIEC) associated with Crohn’s disease

Nicolas Barnich , Marie-Agnès Bringer , Anne-Lise Glasser , Arlette Darfeuille-Michaud
The World of Microbes, International Union of Microbiological Societies, Jul 2002, Paris, France. 1 p., 2002
Poster de conférence hal-02828377v1

Exosomes: From functions in host-pathogen interactions and immunity to diagnostic and therapeutic opportunities

Jessica Carrière , Nicolas Barnich , Thu Nguyen Hang Thi
Reviews of Physiology, Biochemistry and Pharmacology, 172, SPRINGER-VERLAG BERLIN, pp.37, 2016, Reviews of Physiology Biochemistry and Pharmacology, 978-3-319-49902-4; 978-3-319-49901-7. ⟨10.1007/112_2016_7⟩
Chapitre d'ouvrage hal-02800535v1