Nicolas Henry

Publications

Article dans une revue (36)

A Practical Comparison of Short‐ and Long‐Read Metabarcoding Sequencing: Challenges and Solutions for Plastid Read Removal and Microbial Community Exploration of Seaweed Samples Coralie Rousseau,Nicolas Henry,Sylvie Rousvoal,Gwenn Tanguy,Erwan Legeayet al. Molecular Ecology Resources, 2025, 25 (7), ⟨10.1111/1755-0998.14129⟩ Article dans une revue hal-05273465v1
Nitrogen concentration shapes the size structure and the functional diversity of phytoplankton communities in the southern Indian Ocean Hugo Berthelot,Joanna Zukowska,Nicolas Henry,Cyril Noël,Melilotus Thyssenet al. ISME Communications, 2025, 5 (1), pp.ycaf195. ⟨10.1093/ismeco/ycaf195⟩ Article dans une revue hal-05403677v1
A Practical Comparison of Short‐ and Long‐Read Metabarcoding Sequencing: Challenges and Solutions for Plastid Read Removal and Microbial Community Exploration of Seaweed Samples Coralie Rousseau,Nicolas Henry,Sylvie Rousvoal,Gwenn Tanguy,Erwan Legeayet al. Molecular Ecology Resources, 2025, 25 (7), pp.e14129. ⟨10.1111/1755-0998.14129⟩ Article dans une revue hal-05557625v1
A Practical Comparison of Short‐ and Long‐Read Metabarcoding Sequencing: Challenges and Solutions for Plastid Read Removal and Microbial Community Exploration of Seaweed Samples Coralie Rousseau,Nicolas Henry,Sylvie Rousvoal,Gwenn Tanguy,Erwan Legeayet al. Molecular Ecology Resources, 2025, 25 (7), pp.e14129. ⟨10.1111/1755-0998.14129⟩ Article dans une revue hal-05557567v1
Seasonal transition in the dominance of photoautotrophic and heterotrophic protists in the photic layer of a subtropical marine ecosystem Yoav Avrahami,Raffaele Siano,Maxim Rubin‐blum,Gil Koplovitz,Nicolas Henryet al. Environmental Microbiology Reports, 2025, 17 (4), pp.e70126. ⟨10.1111/1758-2229.70126⟩ Article dans une revue hal-05206183v1
Omics exploration of deep-sea biodiversity: data from the “Pourquoi Pas les Abysses?” and eDNAbyss projects Sophie Arnaud-Haond,Blandine Trouche,Cathy Liautard-Haag,Karine Alain,Johanne Aubéet al. Scientific Data , 2025, 12 (1), pp.1982. ⟨10.1038/s41597-025-06009-1⟩ Article dans une revue hal-05434404v1
Patterns and drivers of diatom diversity and abundance in the global ocean Juan Pierella Karlusich,Karen Cosnier,Lucie Zinger,Nicolas Henry,Charlotte Nefet al. Nature Communications, 2025, 16 (1), pp.3452. ⟨10.1038/s41467-025-58027-7⟩ Article dans une revue hal-05138560v1
Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes Daryna Zavadska,Nicolas Henry,Adrià Auladell,Cédric Berney,Daniel Richter PLoS ONE, 2024, 19 (6), pp.e0303697. ⟨10.1371/journal.pone.0303697⟩ Article dans une revue hal-04908413v1
The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton Raphaël Morard,Kate Darling,Agnes Weiner,Christiane Hassenrück,Chiara Vanniet al. Biological Reviews, 2024, 99 (4), pp.1218-1241. ⟨10.1111/brv.13065⟩ Article dans une revue hal-04552961v1
How good are global DNA‐based environmental surveys for detecting all protist diversity? Arcellinida as an example of biased representation Fernando Useros,Iván García-Cunchillos,Nicolas Henry,Cédric Berney,Enrique Lara Environmental Microbiology, 2024, 26 (3), pp.e16606. ⟨10.1111/1462-2920.16606⟩ Article dans une revue hal-04927460v1
O short'branch Microsporidia, where art thou? Identifying diversity hotspots for future sampling Megan Gross,Ľubomír Rajter,Frédéric Mahé,David Bass,Cédric Berneyet al. European Journal of Protistology, 2024, 96, pp.126119. ⟨10.1016/j.ejop.2024.126119⟩ Article dans une revue hal-04908383v1
Inter-comparison of marine microbiome sampling protocols Francisco Pascoal,Maria Paola Tomasino,Roberta Piredda,Grazia Marina Quero,Luís Torgoet al. ISME Communications, 2023, 3 (1), pp.84. ⟨10.1038/s43705-023-00278-w⟩ Article dans une revue hal-04239634v1
Diversity of the Pacific Ocean coral reef microbiome Pierre Galand,Hans-Joachim Ruscheweyh,Guillem Salazar,Corentin Hochart,Nicolas Henryet al. Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩ Article dans une revue hal-04176291v1
Pan-Arctic plankton community structure and its global connectivity Federico M Ibarbalz,Nicolas Henry,Frédéric Mahé,Mathieu Ardyna,Adriana Zingoneet al. Elementa: Science of the Anthropocene, 2023, 11 (1), pp.00060. ⟨10.1525/elementa.2022.00060⟩ Article dans une revue hal-04267640v1
Ocean-wide comparisons of mesopelagic planktonic community structures Janaina Rigonato,Marko Budinich,Alejandro Murillo,Manoela Brandão,Juan Pierella Karlusichet al. ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩ Article dans une revue hal-04184772v1
Predicting global distributions of eukaryotic plankton communities from satellite data Hiroto Kaneko,Hisashi Endo,Nicolas Henry,Cédric Berney,Frédéric Mahéet al. ISME Communications, 2023, 3 (1), pp.101. ⟨10.1038/s43705-023-00308-7⟩ Article dans une revue hal-04394784v1
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment Tristan Cordier,Inès Barrenechea Angeles,Nicolas Henry,Franck Lejzerowicz,Cédric Berneyet al. Science Advances , 2022, 8 (5), ⟨10.1126/sciadv.abj9309⟩ Article dans une revue hal-03561462v1
Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale Colomban de Vargas,Noan Le Bescot,Thibaut Pollina,Nicolas Henry,Sarah Romacet al. Frontiers in Marine Science, 2022, 9, pp.936972. ⟨10.3389/fmars.2022.936972⟩ Article dans une revue hal-03788523v1
Exploring the phycosphere of Emiliania huxleyi : from bloom dynamics to microbiome assembly experiments Mariana Câmara dos Reis,Sarah Romac,Florence Le Gall,Dominique Marie,Miguel Fradaet al. Molecular Ecology, In press, ⟨10.1111/mec.16829⟩ Article dans une revue hal-03596404v3
A robust approach to estimate relative phytoplankton cell abundances from metagenomes Juan José Pierella Karlusich,Eric Pelletier,Lucie Zinger,Fabien Lombard,Adriana Zingoneet al. Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩ Article dans une revue hal-03559541v1
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems Daniel Richter,Romain Watteaux,Thomas Vannier,Jade Leconte,Paul Frémontet al. eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩ Article dans une revue hal-02399723v2
Seasonal dynamics of marine protist communities in tidally mixed coastal waters Mariarita Caracciolo,Fabienne Rigaut-Jalabert,Sarah Romac,Frédéric Mahé,Samuel Forsanset al. Molecular Ecology, 2022, 31 (14), pp.3761-3783. ⟨10.1111/mec.16539⟩ Article dans une revue hal-03781932v1
Environmental vulnerability of the global ocean epipelagic plankton community interactome Samuel Chaffron,Erwan Delage,Marko Budinich,Damien Vintache,Nicolas Henryet al. Science Advances , 2021, 7 (35), pp.eabg1921. ⟨10.1126/sciadv.abg1921⟩ Article dans une revue hal-03443359v2
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA Miriam I Brandt,Florence Pradillon,Blandine Trouche,Nicolas Henry,Cathy Liautard-Haaget al. Scientific Reports, 2021, 11 (1), pp.7856. ⟨10.1038/s41598-021-86396-8⟩ Article dans une revue hal-03198097v1
The Ocean Barcode Atlas: a web service to explore the biodiversity and biogeography of marine organisms. Caroline Vernette,Nicolas Henry,Julien Lecubin,Colomban de Vargas,Pascal Hingampet al. Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13322⟩ Article dans une revue hal-03115219v1
Macroscale patterns of oceanic zooplankton composition and size structure Manoela Brandão,Fabio Benedetti,Séverine Martini,Yawouvi Dodji Soviadan,Jean-Olivier Irissonet al. Scientific Reports, 2021, 11 (1), pp.15714. ⟨10.1038/s41598-021-94615-5⟩ Article dans une revue hal-03318806v1
Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean Hiroto Kaneko,Romain Blanc-Mathieu,Hisashi Endo,Samuel Chaffron,Tom Delmontet al. iScience, 2021, 24 (1), pp.102002. ⟨10.1016/j.isci.2020.102002⟩ Article dans une revue hal-03097258v3
An assessment of environmental metabarcoding protocols aiming at favoring contemporary biodiversity in inventories of deep-sea communities Miriam Brandt,Blandine Trouche,Nicolas Henry,Cathy Liautard-Haag,Lois Maignienet al. Frontiers in Marine Science, 2020, 7, pp.234. ⟨10.3389/fmars.2020.00234⟩ Article dans une revue hal-03410860v1
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions Hisashi Endo,Romain Blanc-Mathieu,Yanze Li,Guillem Salazar,Nicolas Henryet al. Nature Ecology & Evolution, 2020, 4 (12), pp.1639-1649. ⟨10.1038/s41559-020-01288-w⟩ Article dans une revue hal-02974168v1
Global Trends in Marine Plankton Diversity across Kingdoms of Life Federico Ibarbalz,Nicolas Henry,Manoela Brandão,Severine Martini,Greta Busseniet al. Cell, 2019, 179 (5), pp.1084-1097.e21. ⟨10.1016/j.cell.2019.10.008⟩ Article dans une revue hal-03094778v1
Coupling between taxonomic and functional diversity in protistan coastal communities Pierre Ramond,Marc Sourisseau,Nathalie Simon,Sarah Romac,Sophie Schmittet al. Environmental Microbiology, 2019, 21 (2), pp.730-749. ⟨10.1111/1462-2920.14537⟩ Article dans une revue hal-03971181v1
Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean Johan Decelle,Quentin Carradec,Xavier Pochon,Nicolas Henry,Sarah Romacet al. Current Biology, 2018, 28 (22), pp.3625-3633.e3. ⟨10.1016/j.cub.2018.09.024⟩ Article dans une revue hal-02194113v1
The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.) Solenn Mordret,Sarah Romac,Nicolas Henry,Sebastien Colin,Margaux Carmichaelet al. The International Society of Microbiologial Ecology Journal, 2016, 10 (6), pp.1424-1436. ⟨10.1038/ismej.2015.211⟩ Article dans une revue hal-01258214v1
Eukaryotic plankton diversity in the sunlit ocean Noan Le Bescot,Ian Probert,Margaux Carmichael,Julie Poulain,Sarah Romacet al. Science, 2015, 348 (6237), pp.1261605. ⟨10.1126/science.1261605⟩ Article dans une revue hal-01253979v1
Determinants of community structure in the global plankton interactome Gipsi Lima-Mendez,Karoline Faust,Nicolas Henry,Johan Decelle,Sébastien Colinet al. Science, 2015, 348 (6237), pp.1262073. ⟨10.1126/science.1262073⟩ Article dans une revue hal-01234200v1
Physiological responses of Manila clams Venerupis (=Ruditapes) philippinarum with varying parasite Perkinsus olseni burden to toxic algal Alexandrium ostenfeldii exposure. Malwenn Lassudrie,Philippe Soudant,Gaëlle Richard,Nicolas Henry,Walid Medhioubet al. Aquatic Toxicology, 2014, 154, pp.27-38. ⟨10.1016/j.aquatox.2014.05.002⟩ Article dans une revue hal-01023217v1