Nicolas Parisot Assistant Professor, PhD in Bioinformatics

Identifiants chercheurs

IdHAL :

nicolas-parisot

ORCID :

0000-0001-5217-8415

IdRef :

181863030

ResearcherID :

http://www.researcherid.com/rid/C-8116-2012

Présentation

Positions

2015-now: Assistant Professor at

INSA Lyon

and

BF2I Lab

2014-2015: Fixed term Assistant Professor (French ATER) at

INSA Lyon

and

BF2I Lab

. &quot;High-throughput genomics and transcriptomics to study insect symbioses&quot;

2011-2014: PhD student, Université Blaise Pascal (Clermont-Ferrand II, France),

LMGE

and

CIDAM

labs. &quot;Selection of oligonucleotide probes for high-throughput study of complex environments&quot;

Academic degrees

2011-2014: PhD thesis in Bioinformatics and Microbial Ecology, Université Blaise Pascal (Clermont-Ferrand II, France)

2010-2011: Master of Science in Biostatistics and Bioinformatics, Université Claude Bernard (Lyon I, France)

2008-2011: Master of Engineering degree in Bioinformatics and Modelling, INSA Lyon, France

2006-2008: Technology degree in Bioinformatics, Université d'Auvergne (Aurillac, France)

Publications

Article dans une revue (57)

Evolutionary trajectories, early diversification and species-specific amplification of the metazoan Inhibitor of Apoptosis (IAP) repertoire Mélanie Ribeiro Lopes,Nicolas Parisot,Sergio Peignier,François Renoz,Patrice Baa-Puyouletet al. Molecular Biology and Evolution, In press, pp.msag078. ⟨10.1093/molbev/msag078/8539999⟩ Article dans une revue hal-05581229v1
Phytophthora alni Infection Reinforces the Defense Reactions in Alnus glutinosa - Frankia Roots to the Detriment of Nodules Mathilde Vincent,Hasna Boubakri,Pascale Fournier,Nicolas Parisot,Pierre Pétriacqet al. Molecular Plant-Microbe Interactions, 2025, 38 (3), pp.463-478. ⟨10.1094/MPMI-12-24-0160-R⟩ Article dans une revue hal-04935102v1
Frankia Root Nodulation Alters the Molecular Defence Responses Against Phytophthora alni Infection in Alnus glutinosa Mathilde Vincent,Hasna Boubakri,Pascale Fournier,Nicolas Parisot,Guylaine Miotelloet al. Plant Pathology, 2025, ⟨10.1111/ppa.14105⟩ Article dans une revue hal-05128776v1
Annotation of transcription factors, chromatin-associated factors, and basal transcription machinery in the pea aphid, Acyrthosiphon pisum, and development of the ATFdb database, a resource for studies of transcriptional regulation Nicolas Parisot,Mélanie Ribeiro Lopes,Sergio Peignier,Patrice Baa-Puyoulet,Hubert Charleset al. Insect Biochemistry and Molecular Biology, 2025, 177, pp.104217. ⟨10.1016/j.ibmb.2024.104217⟩ Article dans une revue hal-04832131v1
ArtSymbioCyc, a metabolic network database collection dedicated to arthropod symbioses: a case study, the tripartite cooperation in Sipha maydis Patrice Baa-Puyoulet,Léo Gerlin,Nicolas Parisot,Sergio Peignier,François Renozet al. mSystems, 2025, 10 (4), ⟨10.1128/msystems.00140-25⟩ Article dans une revue hal-04987746v1
High‐Throughput Tn‐Seq Screens Identify Both Known and Novel Pseudomonas putida KT2440 Genes Involved in Metal Tolerance Kevin Royet,Laura Kergoat,Stefanie Lutz,Charlotte Oriol,Nicolas Parisotet al. Environmental Microbiology, 2025, 27 (5), pp.e70095. ⟨10.1111/1462-2920.70095⟩ Article dans une revue hal-05128789v1
Bacterial tubular networks channel carbohydrates in insect endosymbiosis Séverine Balmand,Camille Rivard,Sergio Peignier,Rachel Santarella-Mellwig,Meriem Ghanem-Debbacheet al. Cell, 2025, 188 (26), pp.7355-7365. ⟨10.1016/j.cell.2025.10.001⟩ Article dans une revue hal-05395665v1
Dual-transcriptomics on microdissected cells reveals functional specialisation of symbiont-bearing-cells and contrasted responses to nutritional stress in the cereal weevil Nikoletta Galambos,Nicolas Parisot,Agnès Vallier,Claudia Bevilacqua,Séverine Balmandet al. Microbiome, 2025, 13 (1), pp.182. ⟨10.1186/s40168-025-02164-0⟩ Article dans une revue hal-05220930v1
MicroAnnot: A Dedicated Workflow for Accurate Microsporidian Genome Annotation Jérémy Tournayre,Valérie Polonais,Ivan Wawrzyniak,Reginald Florian Akossi,Nicolas Parisotet al. International Journal of Molecular Sciences, 2024, 25 (2), pp.880. ⟨10.3390/ijms25020880⟩ Article dans une revue hal-04427987v1
Cereal weevils' antimicrobial peptides: at the crosstalk between development, endosymbiosis and immune response N. Galambos,C. Vincent-Monegat,A. Vallier,N. Parisot,A. Heddiet al. Philosophical Transactions of the Royal Society B: Biological Sciences, 2024, 379 (1901), pp.20230062. ⟨10.1098/rstb.2023.0062⟩ Article dans une revue hal-04632867v1
PacBio Hi-Fi genome assembly of Sipha maydis, a model for the study of multipartite mutualism in insects François Renoz,Nicolas Parisot,Patrice Baa-Puyoulet,Léo Gerlin,Samir Fakhouret al. Scientific Data , 2024, 11 (1), pp.450. ⟨10.1038/s41597-024-03297-x⟩ Article dans une revue hal-04632873v1
Differential responses of Ceratitis capitata to infection by the entomopathogenic fungus Purpureocillium lilacinum Wafa Djobbi,Meriem Msaad Guerfali,Agnès Vallier,Kamel Charaabi,Hubert Charleset al. PLoS ONE, 2023, 18 (9), pp.e0286108. ⟨10.1371/journal.pone.0286108⟩ Article dans une revue hal-04227067v1
Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp. Mariana Galvão Ferrarini,Agnès Vallier,Carole Vincent-Monégat,Elisa Dell’aglio,Benjamin Gilletet al. Microbiome, 2023, 11 (1), pp.274. ⟨10.1186/s40168-023-01714-8⟩ Article dans une revue hal-04345509v1
Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity Mariana Galvão Ferrarini,Agnès Vallier,Elisa Dell’aglio,Séverine Balmand,Carole Vincent-Monégatet al. Frontiers in Physiology, 2023, 14, pp.1142513. ⟨10.3389/fphys.2023.1142513⟩ Article dans une revue hal-04045330v1
GReNaDIne: A Data-Driven Python Library to Infer Gene Regulatory Networks from Gene Expression Data Pauline Schmitt,Baptiste Sorin,Timothée Frouté,Nicolas Parisot,Federica Calevroet al. Genes, 2023, 14 (2), pp.269. ⟨10.3390/genes14020269⟩ Article dans une revue hal-04045297v1
Evolutionary diversification of insulin-related peptides (IRPs) in aphids and spatiotemporal distribution in Acyrthosiphon pisum C. Huygens,Mélanie Ribeiro Lopes,Karen Gaget,G. Duport,S. Peignieret al. Insect Biochemistry and Molecular Biology, In press, 141, pp.103670. ⟨10.1016/j.ibmb.2021.103670⟩ Article dans une revue hal-03507324v1
The Di-Symbiotic Systems in the Aphids Sipha maydis and Periphyllus lyropictus Provide a Contrasting Picture of Recent Co-Obligate Nutritional Endosymbiosis in Aphids François Renoz,Jérôme Ambroise,Bertrand Bearzatto,Samir Fakhour,Nicolas Parisotet al. Microorganisms, 2022, 10 (7), pp.1360. ⟨10.3390/microorganisms10071360⟩ Article dans une revue hal-03738802v1
Aphid BCR4 Structure and Activity Uncover a New Defensin Peptide Superfamily Karine Loth,Nicolas Parisot,Françoise Paquet,Hugo Terrasson,Catherine Sivignonet al. International Journal of Molecular Sciences, 2022, 23 (20), pp.12480. ⟨10.3390/ijms232012480⟩ Article dans une revue hal-03862651v1
Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Mariana Galvão Ferrarini,Elisa Dell’aglio,Agnès Vallier,Severine Balmand,Carole Vincent-Monégatet al. Microbiome, 2022, 10 (1), pp.156. ⟨10.1186/s40168-022-01334-8⟩ Article dans une revue hal-03839252v1
The transposable element-rich genome of the cereal pest Sitophilus oryzae Nicolas Parisot,Carlos Vargas-Chávez,Clément Goubert,Patrice Baa-Puyoulet,Séverine Balmandet al. BMC Biology, 2021, 19 (1), pp.241. ⟨10.1186/s12915-021-01158-2⟩ Article dans une revue hal-03627264v1
Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera Jan Philip Oeyen,Patrice Baa-Puyoulet,Joshua Benoit,Leo Beukeboom,Erich Bornberg-Baueret al. Genome Biology and Evolution, 2020, 12 (7), pp.1099-1118. ⟨10.1093/gbe/evaa106⟩ Article dans une revue hal-02618254v1
Evolutionary novelty in the apoptotic pathway of aphids Mélanie Ribeiro Lopes,Nicolas Parisot,Karen Gaget,Cissy Huygens,Sergio Peignieret al. Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (51), pp.32545-32556. ⟨10.1073/pnas.2013847117⟩ Article dans une revue hal-03052353v1
Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth Jessika Consuegra,Théodore Grenier,Patrice Baa-Puyoulet,Isabelle Rahioui,Houssam Akherrazet al. PLoS Biology, 2020, 18 (3), pp.e3000681. ⟨10.1371/journal.pbio.3000681⟩ Article dans une revue hal-02919023v1
Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil Justin Maire,Nicolas Parisot,Mariana Galvao Ferrarini,Agnès Vallier,Benjamin Gilletet al. Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (32), pp.19347-19358. ⟨10.1073/pnas.2007151117⟩ Article dans une revue hal-03028766v1
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest Claude Rispe,Fabrice Legeai,Paul Nabity,Rosa Fernández,Arinder Aroraet al. BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩ Article dans une revue hal-02917617v1
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome Kristen Panfilio,Iris Vargas Jentzsch,Joshua Benoit,Deniz Erezyilmaz,Yuichiro Suzukiet al. Genome Biology, 2019, 20 (1), pp.64. ⟨10.1186/s13059-019-1660-0⟩ Article dans une revue hal-02139052v1
Weevil pgrp-lb prevents endosymbiont TCT dissemination and chronic host systemic immune activation Justin Maire,Carole Vincent-Monégat,Severine Balmand,Agnès Vallier,Mireille Hervéet al. Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (12), pp.5623-5632. ⟨10.1073/pnas.1821806116⟩ Article dans une revue hal-02139047v1
Identification by Tn-seq of Dickeya dadantii genes required for survival in chicory plants Kévin Royet,Nicolas Parisot,Agnès Rodrigue,Erwan Gueguen,Guy Condemine Molecular Plant Pathology, 2019, 20 (2), pp.287-306. ⟨10.1111/mpp.12754⟩ Article dans une revue hal-01922287v1
Bacteriocyte cell death in the pea aphid/ Buchnera symbiotic system Pierre Simonet,Karen Gaget,Severine Balmand,Mélanie Ribeiro Lopes,Nicolas Parisotet al. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (8), pp.E1819 - E1828. ⟨10.1073/pnas.1720237115⟩ Article dans une revue hal-01768487v1
Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum Stefano Colella,Nicolas Parisot,Pierre Simonet,Karen Gaget,Gabrielle Duportet al. Frontiers in Physiology, 2018, 9, pp.1498. ⟨10.3389/fphys.2018.01498⟩ Article dans une revue hal-01905508v1
Metatranscriptomics reveals the active bacterial and eukaryotic fibrolytic communities in the rumen of dairy cow fed a mixed diet Sophie Marre,Nicolas Parisot,Pascale Lepercq,Frédérique Durand,Pascale Mosoniet al. Frontiers in Microbiology, 2017, 8, pp.67-67. ⟨10.3389/fmicb.2017.00067⟩ Article dans une revue hal-01606055v1
Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes Abdel Belkorchia,Jean-François Pombert,Valérie Polonais,Nicolas Parisot,Frédéric Delbacet al. DNA Research, 2017, 24 (3), pp.251-260. ⟨10.1093/dnares/dsx002⟩ Article dans une revue hal-01594835v1
Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model Céline Ribière,Pierre Peyret,Nicolas Parisot,Claude Darcha,Pierre Déchelotteet al. Scientific Reports, 2016, 6, pp.1-11. ⟨10.1038/srep31027⟩ Article dans une revue hal-02637913v1
Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells Cyril Guilhen,Nicolas Charbonnel,Nicolas Parisot,Nathalie Gueguen,Agnès Iltiset al. BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-2557-x⟩ Article dans une revue hal-01394069v1
Distribution of dehalococcoidia in the anaerobic deep water of a remote meromictic crater lake and detection of dehalococcoidia-derived reductive dehalogenase homologous genes Corinne Biderre-Petit,Eric Dugat-Bony,Mickaël Mege,Nicolas Parisot,Lorenz Adrianet al. PLoS ONE, 2016, 11 (1), ⟨10.1371/journal.pone.0145558⟩ Article dans une revue hal-01599389v2
Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids Pierre Simonet,Karen Gaget,Nicolas Parisot,Gabrielle Duport,Marjolaine Reyet al. Scientific Reports, 2016, 6, pp.1-12. ⟨10.1038/srep34321⟩ Article dans une revue hal-01388523v1
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods Patrice Baa-Puyoulet,Nicolas Parisot,Gérard Febvay,Jaime Huerta-Cepas,Augusto F Vellozoet al. Database - The journal of Biological Databases and Curation, 2016, pp.1-9. ⟨10.1093/database/baw081⟩ Article dans une revue hal-01352558v1
The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes Abdel Belkorchia,Cyrielle Gasc,Valérie Polonais,Nicolas Parisot,Nicolas Galloiset al. PLoS ONE, 2015, 10 (9), pp.1-12. ⟨10.1371/journal.pone.0139075⟩ Article dans une revue hal-01247479v1
Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils Aurélie Cébron,Thierry Beguiristain,Jeanne Bongoua-Devisme,Jérémie Denonfoux,Pierre Faureet al. Environmental Science and Pollution Research, 2015, 22 (18), pp.13724-13738. ⟨10.1007/s11356-015-4117-3⟩ Article dans une revue hal-01248748v1
Weevil endosymbiont dynamics is associated with a clamping of immunity F. Masson,Y. Moné,A. Vigneron,A. Vallier,N. Parisotet al. BMC Genomics, 2015, 16 (1), pp.819. ⟨10.1186/s12864-015-2048-5⟩ Article dans une revue hal-01449139v1
Capturing prokaryotic dark matter genomes C. Gasc,C. Ribière,N. Parisot,R. Beugnot,C. Defoiset al. Research in Microbiology, 2015, 166 (10), pp.814-830. ⟨10.1016/j.resmic.2015.06.001⟩ Article dans une revue hal-01449140v1
Draft Genomes of Three Strains Representative of the Bacillus anthracis Diversity Found in France G. Girault,N. Parisot,E. Peyretaillade,P. Peyret,Sylviane Derzelle Genome Announcements, 2014, 2 (4), pp.25081258. ⟨10.1128/genomeA.00736-14⟩ Article dans une revue hal-01110149v1
Solution Hybrid Selection Capture for the Recovery of Functional Full-Length Eukaryotic cDNAs From Complex Environmental Samples Claudia Bragalini,Céline Ribière,Nicolas Parisot,Laurent Vallon,Elsa Prudentet al. DNA Research, 2014, 21 (6), pp.685-694. ⟨10.1093/dnares/dsu030⟩ Article dans une revue hal-02487472v1
PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification Faouzi Jaziri,Nicolas Parisot,Anis Abid,Jérémie Denonfoux,C. Ribièreet al. Database - The journal of Biological Databases and Curation, 2014, 2014, pp.bau036. ⟨10.1093/database/bau036⟩ Article dans une revue hal-01612766v1
Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae Johan Panek,Hicham El Alaoui,Anne Mone,Serge Urbach,Edith Demettreet al. PLoS ONE, 2014, 9 (6), pp.e100791. ⟨10.1371/journal.pone.0100791⟩ Article dans une revue hal-01053924v1
Large Scale Explorative Oligonucleotide Probe Selection for Thousands of Genetic Groups on a Computing Grid: Application to Phylogenetic Probe Design Using a Curated Small Subunit Ribosomal RNA Gene Database Faouzi Jaziri,Eric Peyretaillade,Mohieddine Missaoui,Nicolas Parisot,Sébastien Cipièreet al. The Scientific World Journal, 2014, 2014, pp.350487. ⟨10.1155/2014/350487⟩ Article dans une revue hal-01110169v2
Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine. Guillaume Borrel,Nicolas Parisot,Hugh Harris,Eric Peyretaillade,Nadia Gaciet al. BMC Genomics, 2014, 15 (1), pp.679. ⟨10.1186/1471-2164-15-679⟩ Article dans une revue pasteur-01059404v1
Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems E Peyretaillade,D Boucher,N Parisot,C Gasc,R Butleret al. Heredity, 2014, pp.25182222. ⟨10.1038/hdy.2014.78⟩ Article dans une revue hal-01110134v1
Microsporidian Genomes Harbor a Diverse Array of Transposable Elements that Demonstrate an Ancestry of Horizontal Exchange with Metazoans. Nicolas Parisot,Adrian Pelin,Cyrielle Gasc,Valérie Polonais,Abdel Belkorchiaet al. Genome Biology and Evolution, 2014, 6 (9), pp.2289-300. ⟨10.1093/gbe/evu178⟩ Article dans une revue hal-01071789v1
The Human Gut Chip ‘‘HuGChip’’, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level William Tottey,Jeremie Denonfoux,Faouzi Jaziri,Nicolas Parisot,Mohiedine Missaouiet al. PLoS ONE, 2013, 449, pp.804 - 804. ⟨10.1371/journal.pone.0062544.s004⟩ Article dans une revue hal-01612757v1
Genome Sequence of &quot;Candidatus Methanomassiliicoccus intestinalis&quot; Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces Guillaume Borrel,Hugh Harris,Nicolas Parisot,Nadia Gaci,William Totteyet al. Genome Announcements, 2013, 1 (4), pp.e00453-13. ⟨10.1128/genomeA.00453-13⟩ Article dans une revue pasteur-02445822v1
Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration Jérémie Denonfoux,Nicolas Parisot,Eric Dugat-Bony,Corinne Petit,Delphine Boucheret al. DNA Research, 2013, 20 (2), pp. 1-12. ⟨10.1093/dnares/dst001⟩ Article dans une revue hal-00783545v1
Detecting unknown sequences with DNA microarrays: explorative probe design strategies. Eric Dugat-Bony,Eric Peyretaillade,Nicolas Parisot,Corinne Biderre-Petit,Faouzi Jaziriet al. Environmental Microbiology, 2012, 14 (2), pp.356-71. ⟨10.1111/j.1462-2920.2011.02559.x⟩ Article dans une revue istex hal-00822134v1
KASpOD a web service for highly specific and explorative oligonucleotide design Nicolas Parisot,Jérémie Denonfoux,Eric Dugat-Bony,Pierre Peyret,Eric Peyretaillade Bioinformatics, 2012, 28 (23), pp.3161-3162. ⟨10.1093/bioinformatics/bts597⟩ Article dans une revue hal-02651992v1
Annotation of microsporidian genomes using transcriptional signals. Eric Peyretaillade,Nicolas Parisot,Valérie Polonais,Sébastien Terrat,Jérémie Denonfouxet al. Nature Communications, 2012, 3 (1), pp.1137. ⟨10.1038/ncomms2156⟩ Article dans une revue hal-00813939v1
Genome Sequence of &quot;Candidatus Methanomethylophilus alvus&quot; Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens Guillaume Borrel,Hugh Mb Harris,William Tottey,A. Mihajlovski,Nicolas Parisotet al. Journal of Bacteriology, 2012, 194 (24), pp.6944 - 6945. ⟨10.1128/JB.01867-12⟩ Article dans une revue hal-01612754v1
Extreme reduction and compaction of microsporidian genomes. Eric Peyretaillade,Hicham El Alaoui,Marie Diogon,Valérie Polonais,Nicolas Parisotet al. Research in Microbiology, 2011, 162 (6), pp.598-606. ⟨10.1016/j.resmic.2011.03.004⟩ Article dans une revue istex hal-00814808v1

Chapitre d'ouvrage (5)

Isolation of Insect as a Platform for Transcriptomic Analyses Mélanie Ribeiro Lopes,Pierre Simonet,Gabrielle Duport,Karen Gaget,Severine Balmandet al. RNA abundance analysis, 2170, pp.185-198, 2021, ⟨10.1007/978-1-0716-0743-5_13⟩ Chapitre d'ouvrage hal-03052268v1
Genetic Diversity of the Apoptotic Pathway in Insects Mélanie Ribeiro Lopes,Nicolas Parisot,Patrick Callaerts,Federica Calevro Evolution, Origin of Life, Concepts ans Methods, Springer International Publishing, pp.253-285, 2019, 978-3-030-30363-1. ⟨10.1007/978-3-030-30363-1_13⟩ Chapitre d'ouvrage hal-02304321v1
Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning Céline Ribière,Réjane Beugnot,Nicolas Parisot,Cyrielle Gasc,Clémence Defoiset al. Microbial Environmental Genomics (MEG), 1399, Springer New York, pp.167-182, 2016, Methods in Molecular Biology, ⟨10.1007/978-1-4939-3369-3_10⟩ Chapitre d'ouvrage hal-03772783v1
Probe design strategies for oligonucleotide microarrays Nicolas Parisot,Eric Peyretaillade,Eric Dugat-Bony,Jérémie Denonfoux,Antoine Mahulet al. Microarray Technology, 1368, Editions Springer, 2016, Methods in Molecular Biology, 978-1-4939-3135-4. ⟨10.1007/978-1-4939-3136-1_6⟩ Chapitre d'ouvrage hal-01273700v1
Software tools for the selection of oligonucleotide probes for microarrays. Nicolas Parisot,Denonfoux Jérémie,Eric Dugat-Bony,Eric Peyretaillade,Pierre Peyret Microarrays: Current technology, Innovations and Applications, Caister Academic Press, 2014 Chapitre d'ouvrage hal-03772798v1

Communication dans un congrès (53)

Distinct host-endosymbiont co-evolutionary trajectories in cereal weevils J Uxue Mendez Leyva,Vallier Agnès,Gillet Benjamin,Hughes Sandrine,Vincent-Monégat Caroleet al. Réseau Ecologie des Interactions durables (REID), May 2025, Villeurbanne (France), France Communication dans un congrès hal-05418827v1
Specific expansion and diversification of Inhibitors of APoptosis (IAPs) support symbiont maintenance and morph-specific regulation in aphids Mélanie Ribeiro Lopes,Nicolas Parisot,Karen Gaget,Sergio Peignier,Emmanuelle Jousselinet al. XII International Symposium on Aphids (ISA), Oct 2025, Pyeongchang, South Korea Communication dans un congrès hal-05290694v1
Eavesdropping on the intimate dialogue between an insect and its nutritional endosymbiont along key stages of their life together Mariana G. Ferrarini,Agnès Vallier,Nikoletta Galambos,Severine Balmand,Claudia Bellavicquaet al. SymbNET International Conference on Host-Microbe Symbiosis, Jun 2024, Olhao - Faro, Portugal Communication dans un congrès hal-04798309v1
Evolution towards a two-way cooperation in a single symbiotic organ: the developmental chronicle of a multi-partner insect endosymbiosis François Renoz,Karen Gaget,Hubert Charles,Nicolas Parisot,Patrice Baa-Puyouletet al. International congress of Ecology and Evolution (SFE2), Société Française d'Ecologie et d'Evolution (SFE2), Oct 2024, Lyon, France Communication dans un congrès hal-04753005v1
Two-way cooperation in a single symbiotic organ: the developmental chronicle of a multi-partner insect endosymbiosis François Renoz,Karen Gaget,Hubert Charles,Mélanie Ribeiro Lopes,Nicolas Parisotet al. 3rd Joint Congress on Evolutionary Biology, Jul 2024, Montreal, Canada Communication dans un congrès hal-04753845v1
RNAseq analysis reveals new roles for conserved metazoan pathways in the regulation of bacteriocyte dynamics Mélanie Ribeiro Lopes,Sergio Peignier,Karen Gaget,François Renoz,Patrick Callaertset al. 14èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Oct 2024, Montpellier, France Communication dans un congrès hal-04783705v1
Evolutionarily conserved metazoan pathways have evolved new functions and regulate bacteriocytes' dynamics in the context of symbiosis Mélanie Ribeiro Lopes,Nicolas Parisot,Sergio Peignier,Karen Gaget,François Renozet al. XXVII International Congress of Entomology, Aug 2024, Kyoto, Japan Communication dans un congrès hal-04702864v1
A genome-wide annotation of transcription factors in the pea aphid, Acyrthosiphon pisum, and the related database, ATFdb Nicolas Parisot,Mélanie Ribeiro Lopes,Hubert Charles,Sergio Peignier,Patrice Baa-Puyouletet al. 13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France Communication dans un congrès hal-04524595v1
Acyrthosiphon pisum tissue-specific gene regulatory network inference Sergio Peignier,Erwan Cruché,Elea Pauliat,Mélanie Ribeiro Lopes,Nicolas Parisotet al. 13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France Communication dans un congrès hal-04670574v1
Cellular specialization inside the symbiotic organ of an insect pest: deciphering the dialog between host and symbiotic bacteria and their adaptation to different dietetic conditions Nikoletta Galambos,Claudia Bevilacqua,Agnès Vallier,Severine Balmand,Benjamin Gilletet al. Microlaser Biotech, Dec 2023, Paris, France Communication dans un congrès hal-04807017v1
Étude des peptides antimicrobiens dans la symbiose mutualiste entre le charançon des céréales Sitophilus oryzae et la bactérie endosymbiotique Sodalis pierantonius Carole Vincent-Monégat,Galambos N.,Nicolas Parisot,Agnès Vallier,Severine Balmandet al. Colloque du réseau "MultiFonction des Peptides AntiMicrobiens" (MuFoPAM), Oct 2023, Lille, France Communication dans un congrès hal-04530729v1
Cellular specialization inside the symbiotic organ of an insect pest: deciphering the dialog between host and symbiotic bacteria and their adaptation to different dietetic conditions Nikoletta Galambos,Claudia Bevilacqua,Agnès Vallier,Severine Balmand,Benjamin Gilletet al. Microgenomics 2023, Jun 2023, Florence (IT), Italy Communication dans un congrès hal-04798331v1
Bacteriocyte-specific Cysteine-Rich (BCR) peptides form a new aphid-specific defensin-like family and are promising regulators of aphid symbiosis Hugo Terrasson,Karine Loth,Nicolas Parisot,Françoise Paquet,Isabelle Rahiouiet al. Rencontres du Réseau Ecologie des Interactions Durables (REID), May 2023, Poitiers, France Communication dans un congrès hal-04633283v1
The red palm weevil Rhynchophorus ferrugineus in the OMICS and post-genomic eras Stéphanie Robin,Fabrice Legeai,Anthony Bretaudeau,Carole Vincent-Monégat,Nicolas Parisotet al. Seventh International Date Palm Conference, Khalifa, Mar 2022, Abu Dabi, United Arab Emirates Communication dans un congrès hal-05567958v1
Transposable element regulation in the cereal weevil Sitophilus oryzae and its potential association with an endosymbiotic bacteria Elisa Dell’aglio,Clément Goubert,Mariana G. Ferrarini,Agnès Vallier,Caroline Blancet al. CNET (23d congrès national des éléments transposables), Jul 2022, Paris, France Communication dans un congrès hal-04783612v1
Les peptides « Bacteriocyte-specific Cystein-Rich » : une nouvelle famille de défensine. Régulateurs de la symbiose chez les pucerons ? Hugo Terrasson,Karine Loth,Nicolas Parisot,Françoise Paquet,Isabelle Rahiouiet al. 9ème Journées du GDR "MultiFonction des Peptides AntiMicrobiens" (MuFoPAM), Oct 2022, Amboise, France Communication dans un congrès hal-04633233v1
Peptides « Bacteriocyte-specific Cysteine Rich » (BCR) : un rôle dans le contrôle de la symbiose ? Focus sur BCR4 chez le puceron du pois. Hugo Terrasson,Karine Loth,Nicolas Parisot,Françoise Paquet,Isabelle Rahiouiet al. 12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France Communication dans un congrès hal-04771966v1
Réseaux de régulation géniques : Méthodes d'inférence et questions biologiques dans le modèle puceron Federica Calevro,Nicolas Parisot,Sergio Peignier Première rencontre SPE et Numérique, INRAE département SPE, May 2022, Lyon, France Communication dans un congrès hal-04783124v1
Utilisation de méthodes d'apprentissage automatique pour la reconstruction et modélisation de réseaux géniques développementaux chez les bactériocytes d'insectes Sergio Peignier,Nicolas Parisot,Federica Calevro 1er séminaire Métaprogramme DIGIT-BIO, Dec 2022, Ecully, France Communication dans un congrès hal-04889858v1
Bacteriocyte differentiation and cell death in the aphid/Buchnera symbiotic system Mélanie Ribeiro Lopes,Nicolas Parisot,Patrick Callaerts,Federica Calevro XXVI International Congress of Entomology, Jul 2022, Helsinki, Finland Communication dans un congrès hal-04670590v1
Unravelling the molecular bases of host-endosymbiont interactions at critical developmental stages of a cereal weevil Mariana G. Ferrarini,Agnès Vallier,Elisa Dell’aglio,Carole Vincent-Monégat,Sandrine Hugheset al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Communication dans un congrès hal-04771926v1
La face cachée des LncRNAs d’Acyrthosiphon pisum Marion Cardinaud,Nicolas Parisot,Antonin Schmitz,Joris Villalba,Marie-Gabrielle Duportet al. 12ème Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés - BAPOA, May 2022, Nice, France Communication dans un congrès hal-04783582v1
The assembly of the rice weevil Sitophilus oryzae is dominated by transposable elements and shades light on the evolution of endosymbiosis in a major crop pest. Nicolas Parisot,Carlos Vargas-Chávez,Clément Goubert,Patrice Baa-Puyoulet,Severine Balmandet al. Arthropod Genomics Symposium 2022, Jun 2022, Notre Dame, United States Communication dans un congrès hal-04783673v1
Décrypter le dialogue moléculaire hôte-symbiote pour l’étude systémique des interactions symbiotiques chez les insectes d’intérêt agronomique Nicolas Parisot,Jonathan Rouzaud-Cornabas Journée de l'Enjeu Santé Globale et Bioingénierie de l'INSA Lyon, Nov 2021, Villeurbanne, France Communication dans un congrès hal-04784485v1
Immune functions and developmental processes promoting endosymbiosis maintenance in the cereal weevil Sitophilus spp. Abdelaziz Heddi,Nicolas Parisot Journées du réseau Etudes Fonctionnelles chez les ORganismes modèles - EFOR, May 2021, Virtual, France Communication dans un congrès hal-04783524v1
The Inhibitor of APoptosis (IAP) gene family in aphids: between expansion and functional diversification Mélanie Ribeiro Lopes,Nicolas Parisot,Sergio Peignier,Karen Gaget,Marie-Gabrielle Duportet al. Webinaire du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2021, Villeurbanne (virtual), France Communication dans un congrès hal-03514209v1
Unraveling the molecular bases of the host-symbiont interactions at critical symbiotic stages Mariana G. Ferrarini,Agnès Vallier,Elisa Dell’aglio,Carole Vincent-Monégat,Sandrine Hugheset al. Webinaires du Groupe Régional de Recherche en Microbiologie des Interactions (G-RREMI) 2021, Jun 2021, Lyon, France Communication dans un congrès hal-04771798v1
Analysis of the inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications Mélanie Ribeiro Lopes,Jousselin Emmanuelle,Patrice Baa-Puyoulet,C. Huygens,Karen Gagetet al. Incontri di diversità delle forme e degli animali, Università di Pisa, 2021, Pisa, Italy Communication dans un congrès hal-03514196v1
Unraveling the molecular bases of the host-symbiont interactions at critical symbiotic stages Mariana G. Ferrarini,Agnès Vallier,Elisa Dell’aglio,Carole Vincent-Monégat,Sandrine Hugheset al. Molecular mechanisms of interspecies interactions, Dec 2021, Virtual conference, Chile Communication dans un congrès hal-04792785v1
Setting up a Dual-RNAseq approach to unravel the modulation of symbiotic structures during the metamorphosis of the cereal weevil Sitophilus oryzae. Mariana G. Ferrarini,Nicolas Parisot,Justin Maire,Agnès Vallier,Benjamin Gilletet al. Insects: Immunity and Infection, Royal Entomology Society, Sep 2020, Virtual, France Communication dans un congrès hal-04806873v1
PGRP-LB, acteur majeur du maintien et du contrôle de l’endosymbiose chez le charançon des céréales. Julien Orlans,Carole Vincent-Monégat,Agnès Vallier,Isabelle Rahioui,Catherine Sivignonet al. Colloque Réseau Ecologie des Interactions Durables (REID) et le réseau Immunologie des Invertébrés (IMMUNINV), May 2019, Montpellier, France Communication dans un congrès hal-04784679v1
Development of a Dual-RNAseq strategy to unravel the molecular bases of host-symbiont interactions Mariana G. Ferrarini,Nicolas Parisot,Agnès Vallier,Justin Maire,Benjamin Gilletet al. Colloque Réseau Ecologie des Interactions Durables (REID) et le réseau Immunologie des Invertébrés (IMMUNINV), May 2019, Montpellier, France Communication dans un congrès hal-04784637v1
Study of insect-bacteria symbiotic interactions by dual RNAseq Natacha Kremer,Mariana G. Ferrarini,Hélène Henri,Sandrine Hughes,Benjamin Gilletet al. Journée Transcriptomique Complexe des GDR GE et BIM, Dec 2019, Nancy, France Communication dans un congrès hal-04784601v1
Extreme makeover: Symbiosis remodeling and endosymbiont relocalization during host metamorphosis in the cereal weevil Sitophilus Justin Maire,Nicolas Parisot,Mariana G. Ferrarini,Agnès Vallier,Benjamin Gilletet al. 2nd Microbial Ecology & Environmental Microbiology Meeting - MEEM, May 2019, Melbourne (AUS), Australia Communication dans un congrès hal-04784732v1
IAP (Inhibitor-of-Apoptosis Protein) gene family expansion and functional diversification in aphids Mélanie Ribeiro Lopes,Nicolas Parisot,Karen Gaget,Marie-Gabrielle Duport,Korneel Henset al. 2nd UK-France Joint meeting on Aphids - Royal Entomologial Society, Apr 2019, Rothamsted, United Kingdom Communication dans un congrès hal-03512999v1
IAP (Inhibitor-of-Apoptosis Protein) gene family expansion and functional characterization in aphids Mélanie Ribeiro Lopes,Nicolas Parisot,Karen Gaget,Marie-Gabrielle Duport,Korneel Henset al. 8th International Symposium on Molecular Insect Science, Jul 2019, Sitges, Spain Communication dans un congrès hal-03741297v1
Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum Nicolas Parisot,Stefano Colella,Mélanie Ribeiro Lopes,Karen Gaget,Marie-Gabrielle Duportet al. INSA Lyon International Partner Days, Oct 2018, Villeurbanne, France Communication dans un congrès hal-03514034v1
Expansion of genes encoding Apoptosis Inhibitor Proteins (IAPs) and their role in a novel bacteriocyte cell death process in aphid symbiosis Mélanie Ribeiro Lopes,Nicolas Parisot,Karen Gaget,Pierre Simonet,Severine Balmandet al. 22. Evolutionary Biology Meeting, Sep 2018, Marseille, France Communication dans un congrès hal-03509938v1
Rôle clé du bactériocyte dans la résilience du puceron aux stress nutritionnels Federica Calevro,Nicolas Parisot,Mélanie Ribeiro Lopes,Stefano Colella,Karen Gagetet al. 11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France Communication dans un congrès hal-03514026v1
A novel cell death process is involved in the elimination of bacteriocytes and their symbionts through aphid aging Mélanie Ribeiro Lopes,Pierre Simonet,Karen Gaget,Severine Balmand,Nicolas Parisotet al. France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France Communication dans un congrès hal-03514078v1
Another way to die for bacteriocytes in the aphid/Buchnera symbiotic system Mélanie Ribeiro Lopes,Pierre Simonet,Karen Gaget,Severine Balmand,Kurt Buhleret al. Journée des doctorants du département SPE, Jun 2018, Nice, France Communication dans un congrès hal-03510629v1
Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum Nicolas Parisot,Mélanie Ribeiro Lopes,Karen Gaget,Marie-Gabrielle Duport,Patrice Baa-Puyouletet al. France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France Communication dans un congrès hal-03514051v1
Amplification des gènes codant les protéines de la famille des IAP et leur rôle dans l'homéostasie bactériocytaire Mélanie Ribeiro Lopes,Nicolas Parisot,Karen Gaget,Marie-Gabrielle Duport,Korneel Henset al. 11èmes rencontres du réseau de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France Communication dans un congrès hal-03741308v1
Life history traits and tissue-specific gene expression changes underlying the symbiotic pea aphid resilience to a tyrosine and phenylalanine depleted diet Nicolas Parisot,Pierre Simonet,Karen Gaget,Marie-Gabrielle Duport,Patrice Baa-Puyouletet al. 9. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2016, Amiens, France Communication dans un congrès hal-03506796v1
The long-term relationship with Buchnera aphidicola imposes another way to die for Acyrthosiphon pisum bacteriocytes Pierre Simonet,Severine Balmand,Karen Gaget,Karine Buhler,Nicolas Parisotet al. 9. Réunion annuelle du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés), Nov 2016, Amiens, France Communication dans un congrès hal-03506794v1
Une nouvelle forme de mort cellulaire impliquée dans la dégénérescence des cellules bactériocytaires chez le puceron du pois, Acyrthosiphon pisum Pierre Simonet,Severine Balmand,Karen Gaget,Marie-Gabrielle Duport,Nicolas Parisotet al. 18. Colloque Biologie de l'Insecte, Jun 2016, Tours, France Communication dans un congrès hal-03506790v1
Propositional Logic for Efficient Microbial Community Assessment by DNA Microarray Data Analysis F. Jaziri,C. Ribiere,C. Gasc,N. Parisot,C. Defoiset al. JOBIM, 2015, Clermont-Fd, France. pp.1-9 Communication dans un congrès hal-02077182v1
From SymbAphidBase to SymbAphidCyc: two companion databases to study and compare aphid symbionts from genomes to metabolic pathways Patrice Baa-Puyoulet,Mathieu Labernardiere,Nicolas Parisot,Jean-Pierre Gauthier,Gérard Febvayet al. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Université d'Auvergne - Clermont-Ferrand I (UdA). FRA., Jul 2015, Clermont-Ferrand, France. 1 p Communication dans un congrès hal-01208786v1
Fungal secondary metabolites from Monascus spp. reduce methane production by affecting rumen methanogenic Archaea diversity in wethers Milka Popova,Nicolas Parisot,Céline Ribière,Jérémie Denonfoux,Eric Dugat-Bonyet al. Greenhouse Gases and Animal Agriculture Conference, 2013, Dublin, Ireland Communication dans un congrès hal-02746467v1
MetaExploArrays: a large-scale oligonucleotide probe design software for explorative DNA microarrays Faouzi Jaziri,David R.C. Hill,Nicolas Parisot,Jeremie Denonfoux,Eric Dugat-Bonyet al. 13. International Conference on Parallel and Distributed Computing, Applications and Technologies, Dec 2012, Bejing, China. ⟨10.1109/PDCAT.2012.94⟩ Communication dans un congrès hal-01393662v1
Détermination de sondes oligonucléotidiques pour biopuces phylogénétiques en environnement grille de calcul Faouzi Jaziri,Sébastien Cipière,Mohieddine Missaoui,Denonfoux Jérémie,Eric Dugat-Bonyet al. Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France Communication dans un congrès hal-00658712v1
Annotation et évolution des familles de transporteurs chez le puceron du pois (Acyrthosiphon pisum) Nicolas Parisot,Karen Gaget,Stefano Colella,Andréane Rabatel,Federica Calevroet al. 3. Réunion Réseau Français de Biologie Adaptative des Pucerons, Institut National de Recherche Agronomique (INRA). UMR Biologie Fonctionnelle, Insectes et Interactions (0203)., Oct 2010, Lyon, France. n. p Communication dans un congrès hal-02818835v1
Genomic analysis of the transport function in the symbiotic system of the pea aphid Acyrthosiphon pisum Yvan Rahbé,Nicolas Parisot,Karen Gaget,Stefano Colella,Andréane Rabatelet al. 5. Meeting GDRE-RA "Comparative genomics", Institut d'Estudis Catalans (IEC). Barcelona, ESP., Nov 2010, Barcelone, Spain. n. p Communication dans un congrès hal-02823073v1

Poster de conférence (45)

Origin and evolution of Inhibitors of apoptosis (IAPs) in early metazoans Mélanie Ribeiro Lopes,Nicolas Parisot,Sergio Peignier,François Renoz,Patrice Baa-Puyouletet al. EVOLYON 2025, Nov 2025, Villeurbanne, France Poster de conférence hal-05290683v1
Distinct host-endosymbiont co-evolutionary patterns in cereal weevils J Uxue Mendez Leyva,Vallier Agnès,Gillet Benjamin,Hughes Sandrine,Vincent-Monégat Caroleet al. Journée Enjeu Santé globale et Bioingénierie, May 2025, Villeurbanne, France Poster de conférence hal-05418900v1
How advanced microscopy tools are uncovering unexpected ways of exchanging nutrients in insect symbiosis Severine Balmand,Camille Rivard,Sergio Peignier,Rachel Santarella-Mellwig,Meriem Ghanem-Debbacheet al. Groupe régional de recherche en microbiologie des interactions (G-RREMI), Nov 2025, Lyon, France Poster de conférence hal-05419490v1
Origin and evolution of Inhibitors of apoptosis (IAP) in early metazoans Mélanie Ribeiro Lopes,Nicolas Parisot,Sergio Peignier,François Renoz,Patrice Baa-Puyouletet al. Jacque Monod conference, Molecular basis for membrane remodelling and organisation, Jun 2025, Roscoff, France Poster de conférence hal-05137897v1
Genomic insights into the evolutionary transition to mutualism in Sodalis endosymbionts J Uxue Mendez Leyva,Vallier Agnès,Gillet Benjamin,Hughes Sandrine,Vincent-Monégat Caroleet al. Groupe régional de recherche en microbiologie des interactions (G-RREMI), Nov 2025, Lyon, France Poster de conférence hal-05418898v1
Unraveling host-endosymbiont co-evolutionary patterns in cereal weevils J Uxue Mendez Leyva,Vallier Agnès,Gillet Benjamin,Hughes Sandrine,Vincent-Monégat Caroleet al. Symbnet PhD Summer School on Host-Microbe Symbioses, Jul 2025, Oeiras, Portugal Poster de conférence hal-05418907v1
Exploring the genomic basis underlying the diversity of host-endosymbiont interactions in Sitophilus spp. weevils J Uxue Mendez Leyva,Agnès Vallier,Benjamin Gillet,Sandrine Hughes,Carole Vincent-Monégatet al. ALPHY - AIEM, Feb 2025, Lyon, France Poster de conférence hal-04940843v1
Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Carole Vincent-Monégat,Mariana G. Ferrarini,Elisa Dell’aglio,Agnès Vallier,Severine Balmandet al. 8th International Symposium on Antimicrobial Peptides, Jun 2024, Marseille (13), France Poster de conférence hal-04771905v1
How advanced microscopy tools are uncovering unexpected ways of exchanging nutrients in insect symbiosis Severine Balmand,Camille Rivard,Sergio Peignier,Rachel Santarella-Mellwig,Meriem Ghanem-Debbacheet al. 13èmes Journées Scientifiques et Techniques du Réseau des Microscopistes INRAE, Nov 2024, Villenave d'Ornon, France Poster de conférence hal-04810099v1
The aphid BCR4 structure and activity uncover a new defensin peptide superfamily Hugo Terrasson,Karine Loth,Nicolas Parisot,Françoise Paquet,Isabelle Rahiouiet al. XXVII International Congress of Entomology, Aug 2024, Kyoto, Japan Poster de conférence hal-04702878v1
Intracellular endosymbionts impact DNA methylation in Sitophilus oryzae J Uxue Mendez Leyva,Agnès Vallier,Mariana Galvão Ferrarini,Nicolas Parisot,Abdelaziz Heddiet al. SymbNET International Conference on Host-Microbe Symbiosis, Jun 2024, Olhão, Portugal Poster de conférence hal-04733153v1
Aphid defense strategies, symbiotic dynamics and the role of transposable elements in parasitoid interactions Mariane Possignolo Gomes,Fernando Luis Cônsoli,Nicolas Parisot,Tobias Baril,Clément Goubertet al. International congress of transposable elements, Apr 2024, Saint Malo, France Poster de conférence hal-04790787v1
Genome assembly of the cereal aphid Sipha maydis, a model for the study of dual endosymbiosis in insects François Renoz,Nicolas Parisot,Patrice Baa-Puyoulet,Léo Gerlin,Samir Fakhouret al. 13e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France Poster de conférence hal-04524568v1
Cellular specialization inside the symbiotic organ of an insect pest: deciphering the dialog between host and symbiotic bacteria and their adaptation to different dietetic conditions Nikoletta Galambos,Claudia Bevilacqua,Agnès Vallier,Severine Balmand,Benjamin Gilletet al. Groupe Régional de Recherche en Microbiologie des Interactions (G-RREMI), Nov 2023, Lyon, France Poster de conférence hal-04807966v1
The Bacteriocyte-specific Cysteine-Rich (BCR) proteins: a role in the control of aphid symbiosis ? Hugo Terrasson,Karine Loth,Françoise Paquet,Nicolas Parisot,Isabelle Rahiouiet al. Journée scientifique enjeu « santé globale et bio‐ingénierie » de l'INSA Lyon, Apr 2023, Villeurbanne, France Poster de conférence hal-04633269v1
Deciphering bacteriocyte differentiation by laser-capture microdissection and dual RNA-sequencing in Sitophilus oryzae / Sodalis pierantonius Nikoletta Galambos,Justin Maire,Claudia Bevilacqua,Severine Balmand,Agnès Vallieret al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-04788603v1
High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae and Sodalis pierantonius endosymbiotic association Nicolas Parisot,Mariana Galvão Ferrarini,Clément Goubert,Carlos Vargas-Chávez,Agnès Vallieret al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-03810657v1
From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts. Patrice Baa-Puyoulet,Nicolas Parisot,Sergio Peignier,Federica Calevro,Hubert Charles 12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France Poster de conférence hal-03810352v1
ER stress as a major regulator of aphid bacteriocyte cell death Karen Gaget,Mélanie Ribeiro Lopes,Marie-Gabrielle Duport,Patrick Callaerts,Nicolas Parisotet al. 12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France Poster de conférence hal-03741344v1
Small RNAs as cross-kingdom communication agents in the cereal pest Sitophilus oryzae Mariana G. Ferrarini,Elisa Dell’aglio,Agnès Vallier,Luis Alfonso Arteaga-Figueroa,Nicolas Parisotet al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France. 2022 Poster de conférence hal-04783615v1
Cellular specialization inside the symbiotic organ of an insect pest: deciphering the dialog between host and symbiotic bacteria and their adaptation to different dietetic conditions Nikoletta Galambos,Justin Maire,Claudia Bevilacqua,Severine Balmand,Agnès Vallieret al. Rencontres du Groupe Régional de Recherche en Microbiologie des Interactions (G-RREMI) 2022, Nov 2022, Lyon, France Poster de conférence hal-04788646v1
Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Mariana G. Ferrarini,Elisa Dell’aglio,Agnès Vallier,Severine Balmand,Carole Vincent-Monégatet al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-04783698v1
Bacteriocytes and the interorgan communication network regulating physiology and metabolism of the pea aphid Cissy Huygens,Mélanie Ribeiro Lopes,Karen Gaget,Marie-Gabrielle Duport,Sergio Peignieret al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-03741324v1
Bacteriocyte specific Cystein Rich peptides, a new defensin like protein family , are promising regulators of aphid symbiosis Hugo Terrasson,Karine Loth,Nicolas Parisot,Françoise Paquet,Isabelle Rahiouiet al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-04771990v1
From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts Patrice Baa-Puyoulet,Nicolas Parisot,Sergio Peignier,Federica Calevro,Hubert Charles 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-04784498v1
Unraveling the molecular bases of the host-symbiont interactions at critical symbiotic stages Mariana G. Ferrarini,Agnès Vallier,Elisa Dell’aglio,Carole Vincent-Monégat,Sandrine Hugheset al. The Rise and Fall of Mutualisms, Oct 2021, Meinz, Germany Poster de conférence hal-04744865v1
Transposable element dynamics in the host-bacteria association of the cereal weevil Sitophilus oryzae Mariana G. Ferrarini,Clément Goubert,Nicolas Parisot,Carlos Vargas-Chávez,Agnès Vallieret al. Mobile DNA 2021, Jun 2021, Virtual, France Poster de conférence hal-04790867v1
From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts Patrice Baa-Puyoulet,Nicolas Parisot,Sergio Peignier,Federica Calevro,Hubert Charles 13. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2020, Nice (virtuel), France Poster de conférence hal-03514174v1
A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system Mélanie Ribeiro Lopes,Pierre Simonet,Karen Gaget,Severine Balmand,Nicolas Parisotet al. 2nd UK-France Joint meeting on Aphids - Royal Entomological Society, Apr 2019, Rothamsted, United Kingdom Poster de conférence hal-03513018v1
4IN: an interactive database for insect innate immunity Carole Vincent-Monégat,Nicolas Parisot,Carlos Vargas-Chávez,Louis Beranger,Aymeric Bonnamouret al. Colloque Réseau Ecologie des Interactions Durables (REID) et le réseau Immunologie des Invertébrés (IMMUNINV), May 2019, Montpellier, France Poster de conférence hal-04784931v1
4IN: an interactive database for insect innate immunity Carole Vincent-Monégat,Nicolas Parisot,Carlos Vargas-Chávez,Louis Beranger,Aymeric Bonnamouret al. Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France Poster de conférence hal-04784972v1
Intracellular bacterial symbiosis in a non-conventional insect: the challenges of imaging subcellular functional organization & bacterial-host co-development Justin Maire,Severine Balmand,Nicolas Parisot,Agnès Vallier,Mariana G. Ferrariniet al. 10th Imaging the cell meeting, Nov 2019, Lyon, France Poster de conférence hal-04785062v1
Development of a dual RNA-seq strategy to unravel the molecular bases of host-symbiont interactions Nicolas Parisot,Agnès Vallier,Justin Maire,Mariana G. Ferrarini,Benjamin Gilletet al. Journée scientifique de la FR BioEnviS, Jan 2019, Villeurbanne, France Poster de conférence hal-04804142v1
Transposable element dynamics in Sitophilus oryzae Clément Goubert,Mariana G. Ferrarini,Agnès Vallier,Nicolas Parisot,Matthieu Boulesteixet al. Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France Poster de conférence hal-04785024v1
Transposable element dynamics and regulation in a major crop pest: Sitophilus oryzae. Caroline Blanc,Théo Chancy,Agnès Vallier,Severine Balmand,Clément Goubertet al. Congrès national sur les éléments transposables, Jul 2019, Lyon, France Poster de conférence hal-04790834v1
Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis Nicolas Parisot,Stefano Colella,Pierre Simonet,Karen Gaget,Marie-Gabrielle Duportet al. 2nd UK-France Joint meeting on Aphids - Royal Entomological Society, Apr 2019, Rothamsted, United Kingdom Poster de conférence hal-03513048v1
Development of a dual RNA-seq strategy to unravel the molecular bases of host-symbiont interactions Nicolas Parisot,Agnès Vallier,Justin Maire,Mariana G. Ferrarini,Benjamin Gilletet al. Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France Poster de conférence hal-04785000v1
A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system Karen Gaget,Severine Balmand,Kurt Buhler,Patrick Callaerts,Nicolas Parisotet al. INSA Lyon International Partner Days, Oct 2018, Villeurbanne (INSA-Lyon), France Poster de conférence hal-03514067v1
Molecular characterization of aphid bacteriocyte cell death by RNAseq analysis Nicolas Parisot,Stefano Colella,Mélanie Ribeiro Lopes,Karen Gaget,Marie-Gabrielle Duportet al. INSA Lyon International Partner Days, Oct 2018, Lyon, France Poster de conférence hal-03741347v1
A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system Mélanie Ribeiro Lopes,Pierre Simonet,Karen Gaget,Severine Balmand,Nicolas Parisotet al. 11. European Congress of Entomology, Jul 2018, Naples, Italy Poster de conférence hal-03509913v1
Molecular characterization of aphid bacteriocyte cell death by RNAseq analysis Mélanie Ribeiro Lopes,Nicolas Parisot,Karen Gaget,Patrick Callaerts,Federica Calevro 11th European Congress of Entomology, Jul 2018, Naples, Italy Poster de conférence hal-03741337v1
Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis Carlos Vargas-Chavez,Nicolas Parisot,C. Goubert,Patrice Baa-Puyoulet,Severine Balmandet al. 6. Meeting of the Spanish Society for Evolutionary Biology (SESBE), Jan 2018, Palma of Mallorca, Balearic Islands, Spain Poster de conférence hal-03514015v1
Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis Nicolas Parisot,Stefano Colella,Pierre Simonet,Karen Gaget,Marie-Gabrielle Duportet al. XIth European Congress of Entomology, Jul 2018, Naples, Italy Poster de conférence hal-03509885v1
The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis Carlos Vargas-Chavez,Nicolas Parisot,Clément Goubert,Patrice Baa-Puyoulet,Severine Balmandet al. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2016, Lyon, France Poster de conférence hal-03506786v1
Analyse génomique de la fonction de transport dans le système symbiotique du puceron du pois Acyrthosiphon pisum Nicolas Parisot,Karen Gaget,Stefano Colella,Andréane Rabatel,Federica Calevroet al. 16. Colloque de Biologie de l’Insecte, Oct 2010, Lyon, France. , 126 p., 2010, CBI-2010 : 16ème Colloque de Biologie de l’Insecte, Lyon, 18 au 20 octobre 2010 Poster de conférence hal-02755294v1

Pré-publication, Document de travail (10)

Bacterial Tubular Networks Channel Carbohydrates in Insect Endosymbiosis Séverine Balmand,Camille Rivard,Sergio Peignier,Rachel Santarella-Mellwig,Meriem Ghanem-Debbacheet al. 2024 Pré-publication, Document de travail hal-04792721v1
Comprehensive annotation of transcription factors, chromatin-associated factors, and basal transcription machinery in the pea aphid, Acyrthosiphon pisum Nicolas Parisot,Mélanie Ribeiro Lopes,Sergio Peignier,Patrice Baa-Puyoulet,Hubert Charleset al. 2024 Pré-publication, Document de travail hal-04792881v1
High-throughput Tn-seq screens identify both known and novel&lt;i&gt;Pseudomonas putida&lt;/i&gt;KT2440 genes involved in metal resistance Kevin Royet,Laura Kergoat,Stefanie Lutz,Charlotte Oriol,Nicolas Parisotet al. 2024 Pré-publication, Document de travail hal-04791915v1
Transcriptional survey of ovarian bacteriomes in the cereal weevil,&lt;i&gt;Sitophilus oryzae&lt;/i&gt;, shows down-regulation of immune effectors at the onset of sexual maturity Mariana Galvão Ferrarini,Agnès Vallier,Elisa Dell’aglio,Séverine Balmand,Carole Vincent-Monégatet al. 2024 Pré-publication, Document de travail hal-04791940v1
Cereal Weevil’s Antimicrobial Peptides: At the Crosstalk between Development, Endosymbiosis and Immune Response N. Galambos,Carole Vincent-Monégat,Agnès Vallier,Nicolas Parisot,Abdelaziz Heddiet al. 2024 Pré-publication, Document de travail hal-04791881v1
Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil&lt;i&gt;Sitophilus&lt;/i&gt;spp Mariana Galvão Ferrarini,Agnès Vallier,Carole Vincent-Monégat,Elisa Dell’aglio,Benjamin Gilletet al. 2024 Pré-publication, Document de travail hal-04791892v1
Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Mariana Galvão Ferrarini,Elisa Dell’aglio,Agnès Vallier,Séverine Balmand,Carole Vincent-Monégatet al. 2024 Pré-publication, Document de travail hal-04792685v1
The transposable element-rich genome of the cereal pest Sitophilus oryzae Nicolas Parisot,Carlos Vargas-Chavez,Clément Goubert,Patrice Baa-Puyoulet,Séverine Balmandet al. 2024 Pré-publication, Document de travail hal-04706472v1
Genome Wide Identification Of Bacterial Genes Required For Plant Infection By Tn-Seq Kévin Royet,Nicolas Parisot,Agnès Rodrigue,Erwan Gueguen,Guy Condemine 2019 Pré-publication, Document de travail hal-01991141v1
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome Kristen Panfilio,Iris Jentzsch,Joshua Benoit,Deniz Erezyilmaz,Yuichiro Suzukiet al. 2020 Pré-publication, Document de travail hal-02936178v1

Thèse (1)

Détermination de sondes oligonucléotidiques pour l'exploration à haut débit de la diversité taxonomique et fonctionnelle d'environnements complexes Nicolas Parisot Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2014. Français. ⟨NNT : 2014CLF22498⟩ Thèse tel-01086970v1