Nicolas Pons

Publications

Article dans une revue (12)

Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2 Amine Ghozlane,Florence Thirion,Florian Plaza Oñate,Franck Gauthier,Emmanuelle Le Chatelieret al. Microbiome, 2025, 13 (1), pp.227. ⟨10.1186/s40168-025-02249-w⟩ Article dans une revue pasteur-05115235v2
A Consensus Statement on establishing causality, therapeutic applications and the use of preclinical models in microbiome research Amira Metwaly,Aicha Kriaa,Zahra Hassani,Federica Carraturo,Celine Druartet al. Nature reviews. Gastroenterology & hepatology, 2025, 22 (5), pp.343-356. ⟨10.1038/s41575-025-01041-3⟩ Article dans une revue hal-05168922v1
Microbiome testing in Europe: navigating analytical, ethical and regulatory challenges Julie Rodriguez,Magali Cordaillat-Simmons,Nelly Badalato,Bernard Berger,Heloise Bretonet al. Microbiome, 2024, 12 (1), pp.258. ⟨10.1186/s40168-024-01991-x⟩ Article dans une revue hal-05133447v1
The bacterial species profiles of the lingual and salivary microbiota differ with basic tastes sensitivity in human Hélène Licandro,Caroline Truntzer,Sebastien Fromentin,Christian Morabito,Benoit Quinquiset al. Scientific Reports, 2023, 13 (1), pp.20339. ⟨10.1038/s41598-023-47636-1⟩ Article dans une revue hal-04304765v1
Mediterranean diet consumption affects the endocannabinoid system in overweight and obese subjects: possible links with gut microbiome, insulin resistance and inflammation Silvia Tagliamonte,Manolo Laiola,Rosalia Ferracane,Marilena Vitale,Maria Galloet al. European Journal of Nutrition, 2021, 60 (7), pp.3703-3716. ⟨10.1007/s00394-021-02538-8⟩ Article dans une revue hal-04006262v1
Statin therapy is associated with lower prevalence of gut microbiota dysbiosis Sara Vieira-Silva,Gwen Falony,Eugeni Belda,Trine Nielsen,Judith Aron-Wisnewskyet al. Nature, 2020, 581 (7808), pp.310-315. ⟨10.1038/s41586-020-2269-x⟩ Article dans une revue hal-02964351v1
Impact of laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota: a metagenomic comparative analysis William Farin,Florian Plaza Oñate,Jonathan Plassais,Christophe Bonny,Christoph Beglingeret al. Surgery for Obesity and Related Diseases, 2020, 16 (7), pp.852-862. ⟨10.1016/j.soard.2020.03.014⟩ Article dans une revue hal-02964357v1
Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology Pierre Bel Lassen,Trine Nielsen,Per-Olof Bergh,Christine Rouault,Sébastien Andréet al. Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-19589-w⟩ Article dans une revue hal-03041270v2
Transcriptional interactions suggest niche segregation among microorganisms in the human gut Damian Rafal Plichta,Agnieszka Sierakowska Juncker,Marcelo Bertalan,Elizabeth Rettedal,Laurent Gautieret al. Nature Microbiology, 2016, 1 (11), pp.1-6. ⟨10.1038/NMICROBIOL.2016.152⟩ Article dans une revue hal-01533942v1
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota Kristoffer Forslund,Falk Hildebrand,Trine Nielsen,Gwen Falony,Emmanuelle Le Chatelieret al. Nature, 2015, 528 (7581), pp.266-273. ⟨10.1038/nature15766⟩ Article dans une revue hal-01535324v1
Specific gut microbiota features and metabolic markers in postmenopausal women with obesity L Brahe,Emmanuelle Le Chatelier,E Prifti,Nicolas Pons,S Kennedyet al. Nutrition & Diabetes, 2015, 5 (6), pp.e159-e159. ⟨10.1038/nutd.2015.9⟩ Article dans une revue pasteur-02552135v1
Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome Saeed Shoaie,Pouyan Ghaffari,Petia Kovatcheva-Datchary,Adil Mardinoglu,Partho Senet al. Cell Metabolism, 2015, 22 (2), pp.320-331. ⟨10.1016/j.cmet.2015.07.001⟩ Article dans une revue hal-02634319v1

Communication dans un congrès (1)

Is oral microbiota implicated in taste? A shotgun metagenomics approach Hélène Licandro,Caroline Truntzer,Sebastien Fromentin,Christian Morabito,Nicolas Ponset al. Saliva Symposium, Toon Ligtenberg, ACTA, May 2023, Egmond aan Zee, Netherlands Communication dans un congrès hal-04145515v1

Poster de conférence (2)

HARMONI: Evaluating advanced microbiota characterization methods for host and environmental samples using DNA metabarcoding and metagenomic sequencing Lindsay Goulet,Michèle Tixier-Boichard,Alexandre Lecoeur,Marie-Noëlle Rossignol,Florence Valenceet al. JOBIM, Jul 2025, Bordeaux, France Poster de conférence hal-05186005v1
Meteor2: accurate taxonomic profiling of host-associated microbial communities for shotgun metagenomics Amine Ghozlane,Florence Thirion,Florian Plaza Oñate,Franck Gauthier,Emmanuelle Le Chatelieret al. 10th International Human Microbiome Consortium (IHMC) Congress 2024, Jun 2024, Rome, Italy. Poster de conférence hal-04877008v1

Pré-publication, Document de travail (2)

A gut microbiome-kidney-heart axis predictive of future cardiovascular diseases. Kanta Chechi,Rima Chakaroun,Antonis Myridakis,Sofia Forslund,Sebastienin Fromentet al. 2025 Pré-publication, Document de travail hal-05408601v1
Le French Gut – le microbiote français: a prospective French citizen science study aiming to analyze 100,000 fecal samples with associated nutritional and clinical data (Preprint) Chloe Connan,Sébastien Fromentin,Mourad Benallaoua,Anne-Sophie Alvarez,Nicolas Ponset al. 2024 Pré-publication, Document de travail hal-04707112v1