Nicolas Lapalu

Publications

Article dans une revue (26)

Conserved ‘Late’ Effector Genes From Leptosphaeria maculans Inducing Gene‐For‐Gene Quantitative Resistance in Brassica napus Semi‐Winter Genotypes Camille Rabeau,Armand Wagner,Nicolas Lapalu,Audren Jiquel,Sébastien Faureet al. Molecular Plant Pathology, 2026, 27 (3), pp.e70224. ⟨10.1111/mpp.70224⟩ Article dans une revue hal-05591916v1
Improved Gene Annotation of the Fungal Wheat Pathogen Zymoseptoria tritici Based on Combined Iso-Seq and RNA-Seq Evidence Nicolas Lapalu,Lucie Lamothe,Yohann Petit,Anne Genissel,Camille Deludeet al. Molecular Plant-Microbe Interactions, 2025, ⟨10.1094/MPMI-07-25-0077-TA⟩ Article dans une revue hal-05290062v1
Quantitative pathogenicity and host adaptation in a fungal plant pathogen revealed by whole-genome sequencing Reda Amezrou,Aurélie Ducasse,Jérôme Compain,Nicolas Lapalu,Anais Pitarchet al. Nature Communications, 2024, 15 (1), pp.1933. ⟨10.1038/s41467-024-46191-1⟩ Article dans une revue hal-04498577v1
Complete genome of the Medicago anthracnose fungus, Colletotrichum destructivum, reveals a mini-chromosome-like region within a core chromosome Nicolas Lapalu,Adeline Simon,Antoine Lu,Peter-Louis Plaumann,Joëlle Amselemet al. Microbial Genomics, 2024, 10 (8), ⟨10.1099/mgen.0.001283⟩ Article dans une revue hal-04683720v1
Complete Genome Sequences of Septoria linicola : A Resource for Studying a Damaging Flax Pathogen Nicolas Lapalu,Adeline Simon,Boris Demenou,Delphine Paumier,Marie-Pierre Guillotet al. Molecular Plant-Microbe Interactions, 2023, 36 (1), pp.59-63. ⟨10.1094/MPMI-09-22-0185-A⟩ Article dans une revue hal-03920575v1
Location and timing govern tripartite interactions of fungal phytopathogens and host in the stem canker species complex Elise Gay,Noémie Jacques,Nicolas Lapalu,Corinne Cruaud,Valerie Lavalet al. BMC Biology, 2023, 21 (1), pp.247. ⟨10.1186/s12915-023-01726-8⟩ Article dans une revue hal-04281614v1
Quantitative and qualitative plant-pathogen interactions call upon similar pathogenicity genes with a spectrum of effects Camilla Langlands-Perry,Anaïs Pitarch,Nicolas Lapalu,Murielle Cuenin,Christophe Bergezet al. Frontiers in Plant Science, 2023, 14, pp.1128546. ⟨10.3389/fpls.2023.1128546⟩ Article dans une revue hal-04125786v1
A secreted protease-like protein in Zymoseptoria tritici is responsible for avirulence on Stb9 resistance gene in wheat Reda Amezrou,Colette Audéon,Jérôme Compain,Sandrine Gélisse,Aurélie Ducasseet al. PLoS Pathogens, 2023, 19 (5), pp.e1011376. ⟨10.1371/journal.ppat.1011376⟩ Article dans une revue hal-04102220v1
Nucleosome patterns in four plant pathogenic fungi with contrasted genome structures Colin Clairet,Nicolas Lapalu,Adeline Simon,Jessica Soyer,Muriel Viaudet al. Peer Community Journal, 2023, 3, pp.e13. ⟨10.24072/pcjournal.227⟩ Article dans une revue hal-04088414v1
Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant Elise J Gay,Jessica L Soyer,Nicolas Lapalu,Juliette Linglin,Isabelle Fudalet al. BMC Biology, 2021, 19 (1), pp.e041118. ⟨10.1186/s12915-021-00989-3⟩ Article dans une revue hal-03190704v1
Genome-wide mapping of histone modifications during axenic growth in two species of Leptosphaeria maculans showing contrasting genomic organization Jessica Soyer,Colin Clairet,Elise Gay,Nicolas Lapalu,Thierry Rouxelet al. Chromosome Research, 2021, 29 (2), pp.219-236. ⟨10.1007/s10577-021-09658-1⟩ Article dans une revue hal-03266749v1
Population genomics reveals molecular determinants of specialization to tomato in the polyphagous fungal pathogen Botrytis cinerea in France Alex Mercier,Adeline Simon,Nicolas Lapalu,Tatiana E Giraud,Marc Bardinet al. Phytopathology, 2021, 111, pp.2355-2366. ⟨10.1094/PHYTO-07-20-0302-FI⟩ Article dans une revue hal-03197705v1
Identification of Copper-Containing Oxidoreductases in the Secretomes of Three Colletotrichum Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes David Ribeaucourt,Safwan Saker,David Navarro,Bastien Bissaro,Elodie Drulaet al. Applied and Environmental Microbiology, 2021, 87 (24), pp.e01526-21. ⟨10.1128/AEM.01526-21⟩ Article dans une revue hal-03619439v1
pH effect on strain-specific transcriptomes of the take-all fungus Kévin Gazengel,Lionel Lebreton,Nicolas Lapalu,Joëlle Amselem,Anne-Yvonne Guillerm-Erckelboudtet al. PLoS ONE, 2020, 15 (7), pp.e0236429. ⟨10.1371/journal.pone.0236429⟩ Article dans une revue hal-02979591v1
Subcellular Localization Screening of Colletotrichum higginsianum Effector Candidates Identifies Fungal Proteins Targeted to Plant Peroxisomes, Golgi Bodies, and Microtubules Guillaume Robin,Jochen Kleemann,Ulla Neumann,Lisa Cabre,Jean-Felix Dalleryet al. Frontiers in Plant Science, 2018, 9, ⟨10.3389/fpls.2018.00562⟩ Article dans une revue hal-02622767v1
De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing Fabien Dutreux,Corinne da Silva,Léo d'Agata,Arnaud Couloux,Elise Gayet al. Scientific Data , 2018, 5 (180235), 11 p. ⟨10.1038/sdata.2018.235⟩ Article dans une revue (data paper) hal-02621276v1
A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene Ziming Zhong,Thierry Marcel,Fanny E. Hartmann,Xin Ma,Clémence Plissonneauet al. New Phytologist, 2017, 214 (2), pp.619 - 631. ⟨10.1111/nph.14434⟩ Article dans une revue hal-01530838v1
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters Jean-Félix Dallery,Nicolas Lapalu,Antonios Zampounis,Sandrine Pigné,Isabelle Luytenet al. BMC Genomics, 2017, 18 (1), pp.667. ⟨10.1186/s12864-017-4083-x⟩ Article dans une revue hal-04011133v1
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters Jean-Felix Dallery,Nicolas Lapalu,Antonios Zampounis,Sandrine Pigné,Isabelle Luytenet al. BMC Genomics, 2017, 18, ⟨10.1186/s12864-017-4083-x⟩ Article dans une revue hal-01608503v1
The first set of expressed sequence tags (EST) from the medicinal mushroom Agaricus subrufescens delivers resource for gene discovery and marker development Marie Foulongne-Oriol,Nicolas Lapalu,Cyril Férandon,Cathy Spataro,Nathalie Ferreret al. Applied Microbiology and Biotechnology, 2014, 98 (18), pp.7879-92. ⟨10.1007/s00253-014-5844-y⟩ Article dans une revue hal-02631326v1
Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens Jonathan J. Grandaubert,Rohan G.T. Lowe,Jessica L. Soyer,C.L. Schoch,Angela P van de Wouwet al. BMC Genomics, 2014, 15 (891), pp.OA. ⟨10.1186/1471-2164-15-891⟩ Article dans une revue hal-02631920v1
GnpIS: an information system to integrate genetic and genomic data from plants and fungi Delphine D. Steinbach,Michael M. Alaux,Joelle J. Amselem,Nathalie Choisne,Sophie S. Durandet al. Database - The journal of Biological Databases and Curation, 2013, 2013, pp.1-9. ⟨10.1093/database/bat058⟩ Article dans une revue hal-02648084v1
Le génome de Botrytis décrypté Muriel Viaud,Anne-Francoise A.-F. Adam-Blondon,Joelle J. Amselem,Pascal P. Bally,Agnes Cimermanet al. La revue des œnologues et des techniques vitivinicoles et œnologiques, 2012, 142, pp.9-11 Article dans une revue hal-00999949v1
Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans Ahmed Salim A. S. Bourras,Michel M. Meyer,Jonathan J. Grandaubert,Nicolas Lapalu,Isabelle Fudal-Grolier Fudalet al. G3, 2012, 2 (8), pp.891-904. ⟨10.1534/g3.112.002048⟩ Article dans une revue hal-01000638v1
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations Thierry Rouxel,J. Grandaubert,Jk. Hane,Claire Hoede,Angela P. van de Wouwet al. Nature Communications, 2011, 2, pp.202. ⟨10.1038/ncomms1189⟩ Article dans une revue hal-00841751v1
Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea Joelle J. Amselem,Christina A. Cuomo,Jan A. L. van Kan,Muriel Viaud,Ernesto P. Benitoet al. PLoS Genetics, 2011, 7 (8), ⟨10.1371/journal.pgen.1002230⟩ Article dans une revue hal-01190236v1

Poster de conférence (11)

MSpangepop: Simulating complex structural variants under advanced demographic scenarios using the coalescent Lucien Piat,Sukanya Denni,Siegfried Dubois,Florent Couturier,Nicolas Lapaluet al. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. pp.1-1, 2025 Poster de conférence hal-05219528v1
GrAuFlow: A snakemake workflow for pangenome graph augmentation using short read data Antoine Malet,Fabrice Legeai,Ludovic Duvaux,Elisabeth Fournier,Pierre Gladieuxet al. Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM2025), Jul 2025, Bordeaux, France Poster de conférence hal-05209521v1
Establishment of pangenome graphs for the analysis and monitoring of fungal plant pathogen populations Nicolas Lapalu,Antoine Loth,Fabrice Legeai,Ludovic Duvaux,Elisabeth Fournieret al. ISCLB 2024 International Symposium on Cereal Leaf Blights, Jun 2024, Zürich, Switzerland. ⟨10.15454/1.5572369328961167E12⟩ Poster de conférence hal-04623680v1
Investigating the involvement of the chromatin state in the control of gene expression in Leptospharia maculans Colin Clairet,Jessica L. Soyer,Elise Gay,Nicolas Lapalu,Adeline Simonet al. Fungal Genetics Conference, Mar 2019, Asiomar, United States Poster de conférence hal-04456403v1
Insights into chromosome structure, transposable elements and secondary metabolite gene clusters from the complete genome sequence of Colletotrichum higginsianum Jean-Félix Dallery,Nicolas Lapalu,M.R. Thon,Richard O'Connell ECFG14 European conference on fungal genetics, Feb 2018, Haifa, Israel Poster de conférence hal-04282959v1
Investigating the involvement of the chromatin state in the control of effector gene expression in Leptospharia maculans Colin Clairet,Nicolas Lapalu,Adeline Simon,Francoise Blaise,Julie Gervaiset al. 40th New Phytologist Symposium, Sep 2017, Vienne, Austria. 2017 Poster de conférence hal-02786095v1
Integration of transcriptomic and proteomics approaches in characterizing short-term gravi-perception signaling networks in poplar wood. Nicolas N. Richet,Mélanie Mauriat,Marie-Claude Lesage Descauses,Odile Rogier,Françoise F. Lauranset al. 8. Plant Biomechanics International Conference PBM8, Nov 2015, Nagoya, Japan. Nagoya University, Proceedings of the Plant Biomechanics Conference, 253 p., 2015, 8th Plant Biomechanics International Conference Poster de conférence hal-02744040v1
The first set of expressed sequence TAGS (ESTS) in the medicinal mushroom Agaricus subrufescens provides opportunitgies to discover production pathways of bioactive compounds and develop molecular breeding Marie Foulongne-Oriol,Nicolas Lapalu,Joelle J. Amselem,Jean-Michel Savoie 12th European conference on fungal genetics, Mar 2014, Séville, Spain. , p.315, 2014 Poster de conférence hal-02797498v1
Analysis of fungal communities associated with grapevine wood diseases, based on fungal ITS pyrosequencing. Nicolas Lapalu,Angelique Gautier,Laetitia Brigitte,Jessica Vallance,Emilie Bruezet al. 27th Fungal Genetics Conference - Asilomar Conference Grounds,, Mar 2013, Asilomar, United States. 2013 Poster de conférence hal-01190538v1
Isochores and effectors: genome reshaping and the birth of highly pathogenic species in fungal phytopathogens. Jonathan Grandaubert,Marie-Helene Balesdent,Isabelle Fudal-Grolier,Joelle J. Amselem,Jonathan Kreplaket al. Plant Genomics Seminar,, Apr 2012, Pont Royal en Provence, France. 2012, FungIsochores Poster de conférence hal-01190821v1
FungIsochores : Isochores and effectors : genome reshaping and the birth of highly pathogenic species in fungal phytopathogens J. Grandaubert,Marie-Hélène Balesdent,Isabelle Fudal,Joëlle Amselem,J. Kreplaket al. Colloque Plant Genomics, 2012, Pont Royal en Provence, France. 2012 Poster de conférence hal-03283788v1

Pré-publication, Document de travail (4)

A roadmap for the adoption of pangenomics in agronomy Stéphanie Bocs,Camille Carrette,Johann Confais,Siegfried Dubois,Ludovic Duvauxet al. 2025 Pré-publication, Document de travail (preprint/prepublication) hal-05357866v2
Conserved &quot;late&quot; effector genes from Leptosphaeria maculans inducing gene-for-gene quantitative resistance in Brassica napus semi-winter genotypes Camille Rabeau,Armand Wagner,Nicolas Lapalu,Audren Jiquel,Sébastien Faureet al. 2025 Pré-publication, Document de travail hal-05303489v1
Improved gene annotation of the fungal wheat pathogen Zymoseptoria tritici based on combined Iso-Seq and RNA-Seq evidence Nicolas Lapalu,Lucie Lamothe,Yohann Petit,Anne Genissel,Camille Deludeet al. 2024 Pré-publication, Document de travail hal-04542681v1
Nucleosome patterns in four plant pathogenic fungi with contrasted genome structures Colin Clairet,Nicolas Lapalu,Adeline Simon,Jessica Soyer,Muriel Viaudet al. 2021 Pré-publication, Document de travail hal-03324321v1

Autre publication scientifique (1)

Leptosphaeria maculans semi-quantitative disease scale (LeMaSQ) Julie Marie Noah,Nicolas Lapalu,Thierry Rouxel,Marie‐hélène Balesdent,Jessica L. Soyer 2024, ⟨10.57745/OYUO2X⟩ Autre publication scientifique hal-05299105v1

Communication dans un congrès (20)

Antagonistic pleiotropic effects reduce adaptation in a Major wheat pathogen Reda Amezrou,Gwilherm Gazeau,Nicolas Lapalu,L. Meyer,Frédéric Suffertet al. 20th Reinhardsbrunn symposium on modern fungicides and andi-fungal compounds, DpG, Apr 2023, Friedrichroda, Germany Communication dans un congrès hal-04286767v1
Antagonistic pleiotropic effects reduce adaptation in a major wheat pathogen R. Amezrou,Gwilherm Gazeau,Nicolas Lapalu,L. Meyer,Frédéric Suffertet al. 20th International Reinhardsbrunn symposium on modern fungicides and antifungal compounds, Apr 2023, Frierichroda, Germany Communication dans un congrès hal-04314029v1
Adaptation of Leptosphaeria maculans to a nonhost species which genes are involved? Julie Noah,Mathilde Gorse,Nicolas Lapalu,Thierry Rouxel,Marie-Hélène Balesdentet al. 16th European Conference on Fungal Genetics, Susanne Zeilinger-Migsich; Hubertus Haas, Mar 2023, Innsbruck,, Austria. pp.376 Communication dans un congrès hal-04095698v1
Of the fungal wheat pathogen Zymoseptoria tritici using ISO-SEQ and RNA-SEQ DATA Marc-Henri Lebrun,Nicolas Lapalu,Lucie Lamothe,Yohann Petit,Scalliet Gabriel 16TH EUROPEAN CONFERENCE ON FUNGAL GENETICS, Susanne Zeilinger-Migsich; Hubertus Haas, Mar 2023, Innsbruck, Austria. pp.625 Communication dans un congrès hal-04102741v1
Antagonistic pleiotropic effecs reduce adaptation in a major wheat pathogen R. Amezrou,Gwilherm Gazeau,Nicolas Lapalu,Frédéric Suffert,Sabine Fillingeret al. International symposium on cereal leaf blights, May 2022, Gammarth, Tunisia Communication dans un congrès hal-04312259v1
Identification of the determinants involved in the adaptation of Leptosphaeria maculans to different Brassica species Julie Noah,Mathilde Gorse,Nicolas Lapalu,Thierry Rouxel,Marie-Hélène Balesdentet al. Fungal Genetics IDF Symposium, Nov 2021, Paris, France Communication dans un congrès hal-04230215v1
Cloning of AvrStb9, a gene of Zymoseptoria tritici conferring avirulence on wheat cultivars carrying the Stb9 resistance gene Thierry Marcel,Colette Audéon,Jérôme Compain,Gélisse Sandrine,Aurélie Ducasseet al. ECFG15 - 15th European conference on fungal genetics, ECFG15, Feb 2020, Rome, Italy. pp.340-341 Communication dans un congrès hal-04273732v1
Analyse de l'interaction entre les membres d'un complexe d'espèces pathogènes du colza (Leptosphaeria maculans et L.biglobosa) par une approche transcriptomique Elise Gay,Marie-Helene Balesdent,Thierry Rouxel,Nicolas Lapalu,Juliette Linglinet al. Journées Jean Chevauchon JJC2018 - 12èmes Rencontres de Phytopathologie & Mycologie,, Jan 2018, Aussois, France. p.40 Communication dans un congrès hal-02790241v1
Investigating the involvement of histone modifications in the control of effector gene expression in Leptospharia maculans, the fungus causing stem canker of oilseed rape Jessica L Soyer,Isabelle Fudal,Colin Clairet,Nicolas Lapalu,Adeline Simonet al. 21th Crucifer Genetics Conference, Jul 2018, saint-Malo, France Communication dans un congrès hal-02786161v1
Investigating the involvement of the chromatin state in the control of effector gene expression in Leptosphaeria maculans Colin Clairet,Jessica L. Soyer,Nicolas Lapalu,Adeline Simon,Francoise Blaiseet al. Journées Jean Chevauchon JJC2018 - 12èmes Rencontres de Phytopathologie & Mycologie,, Jan 2018, Aussois, France. p.14 Communication dans un congrès hal-02785896v1
A first glimpse into the genetic architecture of pathogenicity of Zymoseptoria tritici on bread wheat Thierry Marcel,Aurélie Ducasse,Jérome Compain,Nicolas Lapalu,Z Chang Zhong Chenet al. 29. Fungal genetics conference Asilomar 17, Mar 2017, Pacific Grove, CA, United States. p.246 Communication dans un congrès hal-01530825v1
URGI plant and fungi platform: distributed resources through GMOD tools Joelle J. Amselem,Michael M. Alaux,Nathalie Choisne,Olivier Inizan,Nicolas Lapaluet al. Plant and Animal Genome conference XXII, GMOD session, Jan 2014, San Diego, United States Communication dans un congrès hal-02796293v1
Métagénomique de la microflore du bois de la vigne. Angelique A. Gautier,Laetitia L. Brigitte,Jessica J. Vallance,Emilie E. Bruez,Nicolas Lapaluet al. 9èmes Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP),, Jan 2012, Aussois, France. p. 69 Communication dans un congrès hal-01001057v1
Analyse bioinformatique des données de métagénomique fongique Laetitia L. Brigitte,Joelle J. Amselem,Nicolas Lapalu,Angelique A. Gautier,Jessica J. Vallanceet al. 9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.23-23 Communication dans un congrès hal-00999906v1
Métagénomique de la microflore du bois de la vigne Angelique A. Gautier,Laetitia L. Brigitte,Jessica J. Vallance,Emilie E. Bruez,Nicolas Lapaluet al. 9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.69-69 Communication dans un congrès hal-01000210v1
Fungal species resources: an integrated system for structural and functional genome annotation Nicolas Lapalu,Joelle J. Amselem,Baptiste B. Brault,Laetitia L. Brigitte,Jonathan J. Kreplaket al. 9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.81-81 Communication dans un congrès hal-00999954v1
Botrytis/Sclerotinia resources: an integrated system for structural and functional genome annotation Joelle J. Amselem,Nicolas Lapalu,Julien J. Brault,Laetitia L. Brigitte,Jonathan J. Kreplaket al. BSPGW 2011 : Botrytis/Sclerotinia Post-Genome Workshop, Sep 2011, Lyon, France. pp.71 Communication dans un congrès hal-00999928v1
URGI genome annotation system:an integrated system for structural and functional genome annotation Joelle J. Amselem,Michael Alaux,Nathalie Choisne,Nicolas Lapalu,Baptiste Braultet al. 12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p Communication dans un congrès hal-01019754v1
Comparative genomics of Botrytis cinerea and related Ascomycota species Nicolas Lapalu,Joelle J. Amselem,Hadi Quesneville,Marc-Henri M.-H. Lebrun 8. Rencontres de Phytopathologie - Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France Communication dans un congrès hal-02751266v1
What large-scale T-DNA insertional mutagenesis tells us about pathogenicity?A functional genomics analysis in the dothieomycete Leptosphaeria maculans Ahmed Salim A. S. Bourras,Michel M. Meyer,Jonathan J. Grandaubert,Nicolas Lapalu,Marie-Helene Balesdentet al. ECFG10 : 10. European conference on fungal genetics, Mar 2010, Noordwijkerhout, Netherlands. pp.60 Communication dans un congrès hal-02820119v1

Chapitre d'ouvrage (1)

Mining plant genomic and genetic data using the GnpIS information system Anne-Francoise Adam-Blondon,Michael Alaux,Sophie Durand,Thomas Letellier,Guillaume Merceronet al. Aalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩ Chapitre d'ouvrage hal-03206731v1