Olivier Chapleur

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Publications

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Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data.

Cédric Midoux , Olivier Rué , Olivier Chapleur , Ariane Bize , Valentin Loux et al.

Journal of Open Source Software, 2024, 9 (103), pp.6704. ⟨10.21105/joss.06704⟩

Article dans une revue hal-04785149v1
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Generic role of zeolite in enhancing anaerobic digestion and mitigating diverse inhibitions: Insights from degradation performance and microbial characteristics

Xiaoqing Wang , Vincent Dürr , Angéline Guenne , Laurent Mazéas , Olivier Chapleur

Journal of Environmental Management, 2024, 356, pp.120676. ⟨10.1016/j.jenvman.2024.120676⟩

Article dans une revue hal-04528643v1
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Inhibition of anaerobic digestion by various ammonia sources resulted in subtle differences in metabolite dynamics

Xiaoqing Wang , Stephany Campuzano , Angéline Guenne , Laurent Mazéas , Olivier Chapleur

Chemosphere, 2024, 351, pp.141157. ⟨10.1016/j.chemosphere.2024.141157⟩

Article dans une revue hal-04528641v1
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A comprehensive dataset for assessing the impact of ammonium salts and zeolite on anaerobic digestion performance, microbial dynamics, and metabolomic profiles

Stephany Damaris Campuzano Zagal , Xiaoqing Wang , Nadine Derlet , Angéline Guenne , Chrystelle Bureau et al.

Data in Brief, 2024, 54, pp.110357. ⟨10.1016/j.dib.2024.110357⟩

Article dans une revue (data paper) hal-04625314v1
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Generic mitigating and promoting effect of zeolite on anaerobic digestion: Physicochemical and metataxonomic data

Xiaoqing Wang , Vincent Dürr , Angéline Guenne , Nadine Derlet , Chrystelle Bureau et al.

Data in Brief, 2024, 55, pp.110748. ⟨10.1016/j.dib.2024.110748⟩

Article dans une revue (data paper) hal-04903224v1
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The electrochemical microbial tree: A new concept for wastewater treatment

Morgane Hoareau , Luc Etcheverry , Olivier Chapleur , Chrystelle Bureau , Cédric Midoux et al.

Chemical Engineering Journal, 2023, 454 (3), pp.140295. ⟨10.1016/j.cej.2022.140295⟩

Article dans une revue hal-03851691v1
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Monitoring of cellulose-rich biowaste co-digestion with 3D fluorescence spectroscopy and mass spectrometry-based metabolomics

Olivier Chapleur , Angéline Guenne , Douglas N Rutledge , Francesc Puig-Castellví

Chemosphere, 2023, 349, pp.140824. ⟨10.1016/j.chemosphere.2023.140824⟩

Article dans une revue hal-04330239v1
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Metataxonomics, metagenomics, metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters

Francesc Puig-Castellví , Cédric Midoux , Angéline Guenne , Delphine Conteau , Oscar Franchi et al.

Bioresource Technology, 2022, 346, pp.126612. ⟨10.1016/j.biortech.2021.126612⟩

Article dans une revue hal-03507080v1
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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur et al.

Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16120⟩

Article dans une revue hal-03727436v1
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A longitudinal study of the effect of temperature modification in full-scale anaerobic digesters – dataset combining 16S rDNA gene sequencing, metagenomics, and metabolomics data

Francesc Puig-Castellví , Cédric Midoux , Angéline Guenne , Delphine Conteau , Oscar Franchi et al.

Data in Brief, 2022, 41, pp.107960. ⟨10.1016/j.dib.2022.107960⟩

Article dans une revue (data paper) hal-03585428v1
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Deterministic processes drive the microbial assembly during the recovery of an anaerobic digester after a severe ammonia shock

Laëtitia Cardona , Laurent Mazéas , Olivier Chapleur

Bioresource Technology, 2022, 347, pp.126432. ⟨10.1016/j.biortech.2021.126432⟩

Article dans une revue hal-03871174v1
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Time-course analysis of metabolomic and microbial responses in anaerobic digesters exposed to ammonia

Olivier Chapleur , Simon Poirier , Angéline Guenne , Kim-Anh Le Cao

Chemosphere, 2021, 283, pp.131309. ⟨10.1016/j.chemosphere.2021.131309⟩

Article dans une revue hal-03479331v1
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Rearrangement of incomplete multi-omics datasets combined with ComDim for evaluating replicate cross-platform variability and batch influence

Francesc Puig-Castellví , Delphine Jouan-Rimbaud Bouveresse , Laurent Mazéas , Olivier Chapleur , Douglas N. Rutledge

Chemometrics and Intelligent Laboratory Systems, 2021, 218, pp.104422. ⟨10.1016/j.chemolab.2021.104422⟩

Article dans une revue hal-03469126v1
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Gradual development of ammonia-induced syntrophic acetate-oxidizing activities under mesophilic and thermophilic conditions quantitatively tracked using multiple isotopic approaches

Liping Hao , Lu Fan , Olivier Chapleur , Angéline Guenne , Ariane Bize et al.

Water Research, 2021, 204, ⟨10.1016/j.watres.2021.117586⟩

Article dans une revue hal-03331143v1
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Oxygen-reducing bidirectional microbial electrodes designed in real domestic wastewater

Morgane Hoareau , Benjamin Erable , Olivier Chapleur , Cédric Midoux , Chrystelle Bureau et al.

Bioresource Technology, 2021, 326, pp.0. ⟨10.1016/j.biortech.2021.124663⟩

Article dans une revue hal-03129147v1
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Zeolite favours propionate syntrophic degradation during anaerobic digestion of food waste under low ammonia stress

Laëtitia Cardona , Laurent Mazéas , Olivier Chapleur

Chemosphere, 2021, 262, pp.127932. ⟨10.1016/j.chemosphere.2020.127932⟩

Article dans une revue hal-03344673v1
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Assessment of the microbial interplay during anaerobic co-digestion of wastewater sludge using common components analysis

Francesc Puig-Castellví , Laëtitia Cardona , Delphine Jouan-Rimbaud Bouveresse , Christophe Cordella , Laurent Mazéas et al.

PLoS ONE, 2020, 15 (5), pp.e0232324. ⟨10.1371/journal.pone.0232324⟩

Article dans une revue hal-03040625v1
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Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol

Simon Poirier , Sébastien Dejean , Cédric Midoux , Kim-Anh Lê Cao , Olivier Chapleur

Bioresource Technology, 2020, 316, pp.123952. ⟨10.1016/j.biortech.2020.123952⟩

Article dans une revue hal-02907466v1

Integrative Analyses to Investigate the Link between Microbial Activity and Metabolite Degradation during Anaerobic Digestion

Laëtitia Cardona , Kim-Anh Lê Cao , Francesc Puig-Castellví , Chrystelle Bureau , Céline Madigou et al.

Journal of Proteome Research, 2020, 19 (10), pp.3981-3992. ⟨10.1021/acs.jproteome.0c00251⟩

Article dans une revue hal-03176525v1
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Effect of ammonia exposure and acclimation on the performance and the microbiome of anaerobic digestion

Francesc Puig-Castellví , Laëtitia Cardona , Chrystelle Bureau , Delphine Jouan-Rimbaud Bouveresse , Christophe Cordella et al.

Bioresource Technology Reports, 2020, 11, pp.100488. ⟨10.1016/j.biteb.2020.100488⟩

Article dans une revue hal-03040710v1
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Assessment of substrate biodegradability improvement in anaerobic Co-digestion using a chemometrics-based metabolomic approach

Francesc Puig-Castellví , Laëtitia Cardona , Delphine Jouan-Rimbaud Bouveresse , Christophe Cordella , Laurent Mazéas et al.

Chemosphere, 2020, 254, pp.77-87. ⟨10.1016/j.chemosphere.2020.126812⟩

Article dans une revue hal-03040735v1
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Co-digestion of wastewater sludge: choosing the optimal blend

Laëtitia Cardona , Camille Levrard , Angéline Guenne , Olivier Chapleur , Laurent Mazéas

Waste Management, 2019, 87, pp.772-781. ⟨10.1016/j.wasman.2019.03.016⟩

Article dans une revue hal-02547814v1

A Generic Multivariate Framework for the Integration of Microbiome Longitudinal Studies With Other Data Types

Antoine Bodein , Olivier Chapleur , Arnaud Droit , Kim-Anh Lê Cao

Frontiers in Genetics, 2019, 10, ⟨10.3389/fgene.2019.00963⟩

Article dans une revue hal-02965169v1

Support media can steer methanogenesis in the presence of phenol through biotic and abiotic effects

Simon Poirier , Sébastien Dejean , Olivier Chapleur

Water Research, 2018, 140, pp.24 - 33. ⟨10.1016/j.watres.2018.04.029⟩

Article dans une revue hal-01890001v1

Ecological consequences of abrupt temperature changes in anaerobic digesters

Céline Madigou , Kim-Anh Lê Cao , Chrystelle Bureau , Laurent Mazeas , Sébastien Dejean et al.

Chemical Engineering Journal, 2018, 361, pp.266-277. ⟨10.1016/j.cej.2018.12.003⟩

Article dans une revue hal-01960217v1

Influence of support media supplementation to reduce the inhibition of anaerobic digestion by phenol and ammonia: Effect on degradation performances and microbial dynamics

Simon Poirier , Olivier Chapleur

Data in Brief, 2018, 19, pp.1733-1754. ⟨10.1016/j.dib.2018.06.071⟩

Article dans une revue (data paper) hal-03871203v1

Inhibition of anaerobic digestion by phenol and ammonia: Effect on degradation performances and microbial dynamics

Simon Poirier , Olivier Chapleur

Data in Brief, 2018, 19, pp.2235-2239. ⟨10.1016/j.dib.2018.06.119⟩

Article dans une revue (data paper) hal-03871198v1
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Characterization of a combined batch-continuous procedure for the culture of anammox biomass

R. Connan , P. Dabert , S. Le Roux , O. Chapleur , G. Bridoux et al.

Ecological Engineering, 2017, 106, pp.231-241. ⟨10.1016/j.ecoleng.2017.06.003⟩

Article dans une revue hal-02606365v1

Improving anaerobic digestion with support media: Mitigation of ammonia inhibition and effect on microbial communities

Simon Poirier , Céline Madigou , T. Bouchez , O. Chapleur

Bioresource Technology, 2017, 235, pp.229-239. ⟨10.1016/j.biortech.2017.03.099⟩

Article dans une revue hal-02607552v1

Acclimation strategy to increase phenol tolerance of an anaerobic microbiota

C. Madigou , S. Poirier , C. Bureau , O. Chapleur

Bioresource Technology, 2016, 216, pp.77-86. ⟨10.1016/j.biortech.2016.05.045⟩

Article dans une revue hal-02604283v1

Community shifts within anaerobic digestion microbiota facing phenol inhibition: Towards early warning microbial indicators?

S. Poirier , A. Bize , C. Bureau , T. Bouchez , O. Chapleur

Water Research, 2016, 100, pp.296-305. ⟨10.1016/j.watres.2016.05.041⟩

Article dans une revue hal-02604543v1

New insights into the key microbial phylotypes of anaerobic sludge digesters under different operational conditions

Liping Hao , Ariane Bize , Delphine Conteau , O. Chapleur , Sophie Courtois et al.

Water Research, 2016, 102 (octobre), pp.158-169. ⟨10.1016/j.watres.2016.06.014⟩

Article dans une revue hal-01602845v1

Anaerobic digestion of biowaste under extreme ammonia concentration: Identification of key microbial phylotypes

S. Poirier , Elie Desmond-Le Quéméner , C. Madigou , T. Bouchez , O. Chapleur

Bioresource Technology, 2016, 207, pp.92-101. ⟨10.1016/j.biortech.2016.01.124⟩

Article dans une revue hal-02604542v1

Increasing concentrations of phenol progressively affect anaerobic digestion of cellulose and associated microbial communities

O. Chapleur , Céline Madigou , Raphaël Civade , Yohan Rodolphe , Laurent Mazéas et al.

Biodegradation, 2016, 27 (1), pp.15-27. ⟨10.1007/s10532-015-9751-4⟩

Article dans une revue hal-02604713v1

Asymmetrical response of anaerobic digestion microbiota to temperature changes

O. Chapleur , L. Mazeas , Jean-Jacques Godon , T. Bouchez

Applied Microbiology and Biotechnology, 2015, 100 (3), pp.13. ⟨10.1007/s00253-015-7046-7⟩

Article dans une revue hal-02602033v1

Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity

Fan Lue , Ariane Bize , Alain Guillot , Veronique Monnet , Céline Madigou et al.

The International Society of Microbiologial Ecology Journal, 2014, 8 (1), pp.88-102. ⟨10.1038/ismej.2013.120⟩

Article dans une revue hal-01204297v1

Co-inoculating ruminal content neither provides active hydrolytic microbes nor improves methanization of (13) C-cellulose in batch digesters

O. Chapleur , Ariane Bize , Thibaut Serain , Laurent Mazéas , T. Bouchez

FEMS Microbiology Ecology, 2014, 87 (3), pp.616-619. ⟨10.1111/1574-6941.12249⟩

Article dans une revue hal-02598975v1
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SIMSISH technique does not alter the apparent isotopic composition of bacterial cells

O. Chapleur , Ting-Di Wu , Jean-Luc Guerquin-Kern , Laurent Mazéas , T. Bouchez

PLoS ONE, 2013, 8 (10), 8 p. ⟨10.1371/journal.pone.0077522⟩

Article dans une revue hal-00937599v1
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Inhibition de la digestion anaérobie des boues d'épuration urbaines par le propionate de sodium : production de biogaz et évolution de la communauté microbienne dans des réacteurs semi-continus

Joel Awinzure Agumah , Xiaojun Liu , Chloé Soulard , Laura André , André Pauss et al.

19e Congrès de la Société Française du Génie des Procédés (SFGP 2024), Société Française du Génie des Procédés, Oct 2024, Deauville, France

Communication dans un congrès hal-05306554v1
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Diversity of novel viruses infecting methanogenic archaea, discovered through coupling of stable isotope probing and metagenomics

Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur et al.

Phages in Paris, Phages.fr, Oct 2022, Paris, France

Communication dans un congrès hal-04357012v1
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Characterization of virus-host dynamics in anaerobic digesters under abiotic stress

Marion Coves , Laurent Mazéas , Olivier Chapleur , Cédric Midoux , Ludwig E Jardillier et al.

17e Congrès National de la Société Française de Microbiologie, Société Française de Microbiologie, Oct 2022, Montpellier, France

Communication dans un congrès hal-04356630v1
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Implementation of a Nanopore metagenomic workflow for time-series of complex microbial communities: MAG catalog and functional annotation

Cédric Midoux , Chrystelle Bureau , Baptiste Quentin , Olivier Chapleur

Journée thématique du PEPI IBIS - Métagénomique, PEPI IBIS, Nov 2022, Dijon, France

Communication dans un congrès hal-04229643v1

Analysis of incomplete multi-block datasets by ComDim

Francesc Puig-Castellví , Delphine Jouan-Rimbaud Bouveresse , Laurent Mazéas , Olivier Chapleur , Douglas N. D.N. Rutledge

Chimiométrie 2022, Jun 2022, Brest, France

Communication dans un congrès hal-04231727v1

Unraveling the microbial community interactions in anaerobic digesterswith common components analysis

Francesc Puig-Castellví , Laëtitia Cardona , Olivier Chapleur , Christophe Cordella , Delphine Jouan-Rimbaud Bouveresse et al.

Chimiométrie 2019, Jan 2019, Montpellier, France

Communication dans un congrès hal-02165420v1
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Growing concentrations of phenol increasingly modify microbial communities' dynamics and performances' stability of anaerobic digesters

O. Chapleur , Raphaël Civade , Carolina Hoyos-Hernandez , Laurent Mazéas , T. Bouchez

13th World Congress on Anaerobic Digestion : Recovering (bio) Ressources for the World, Jun 2013, Santiago de Compostella, Spain

Communication dans un congrès hal-01118701v1
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Inhibition of anaerobic digestion of urban sewage sludge by sodium propionate: biogas production and microbial community shift in continuous reactors

Joel Awinzure Agumah , Xiaojun Liu , Laura André , Sophie Thibault , Camille Auneau et al.

18th IWA World Conference On Anaerobic Digestion, Jun 2024, Istanbul, Turkey. 18th IWA World Conference on Anaerobic Digestion CONFERENCE PROCEEDINGS, 2024

Poster de conférence hal-04647882v1
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Deciphering the effect of propionic acid on anaerobic digestion of sludge: gas production and microbial community structure

Chloé Soulard , Xiaojun Liu , André Pauss , Laura André , Thierry Ribeiro et al.

18th IWA World Conference On Anaerobic Digestion, Jun 2024, Istanbul, Turkey. , 18th IWA World Conference on Anaerobic Digestion CONFERENCE PROCEEDINGS, 2024

Poster de conférence hal-04647849v1
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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur et al.

ISME18, 18th International Symposium on Microbial Ecology, Aug 2022, Lausanne, Switzerland.

Poster de conférence hal-04359643v1
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Characterization of virus-host dynamics in anaerobic digesters under abiotic stress

Marion Coves , Laurent Mazéas , Olivier Chapleur , Cédric Midoux , Ludwig E Jardillier et al.

Viruses of Microbes, Jul 2022, Braga, Portugal.

Poster de conférence hal-04356367v1
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Implementation of a Nanopore metagenomic workflow for time-series of complex microbial communities: MAG catalog and functional annotation.

Cédric Midoux , Chrystelle Bureau , Baptiste Quentin , Olivier Chapleur

MICROBES symposium, Sep 2022, Orsay, France.

Poster de conférence hal-03765009v1

Assessment of the substrate biodegrability in anaerobic co-digestion using a metabolomic approach

Francesc Puig-Castellví , Laëtitia Cardona , Delphine Jouan-Rimbaud Bouveresse , Christophe Cordella , Laurent Mazéas et al.

European RFMF Metabomeeting, Jan 2020, Toulouse, France

Poster de conférence hal-04231789v1

Chemometric analysis of a metagenomic dataset to decipher the functional role of the micrpbiota from anaerobic digesters

Francesc Puig-Castellví , Cédric Midoux , Laëtitia Cardona , Olivier Chapleur , Delphine Conteau et al.

Chimiométrie 2020, Jan 2020, Liège, Belgium

Poster de conférence hal-04231788v1
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A molecular ecology approach using Stable Isotope Probing and metagenomics to study viruses of methanogens' diversity Context

Vuong Quoc Hoang Ngo , Maximilien Sotomski , Mart Krupovic , François Enault , Olivier Chapleur et al.

Phages in Grenoble, Oct 2019, Grenoble, France

Poster de conférence hal-04360049v1
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Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data

Cedric Midoux , Olivier Rué , Olivier Chapleur , Mahendra Mariadassou , Théodore Bouchez et al.

JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018

Poster de conférence hal-02737257v1

Characterization of the acclimatization of an anaerobic microbiota subjected to inhibitory phenol concentration

O. Chapleur , Simon Poirier , Céline Madigou

MEWE and Biofilms IWA Specialist Conference, Sep 2016, Copenhagen, Denmark. 2016

Poster de conférence hal-02605559v1

Acclimation of an anaerobic microbiota subjected to inhibitory phenol concentration

O. Chapleur , S. Poirier , C. Madigou

16th International Symposium on Microbial Ecology, Aug 2016, Montréal, Canada. 2016

Poster de conférence hal-02605556v1
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Inhibition de la digestion anaérobie par N-NH3 : étude de la dynamique microbienne et approche métabolomique

Lénaïck Rouillac , O. Chapleur , Simon Poirier , Céline Madigou , Angéline Guenne et al.

10èmes journées scientifiques du RFMF, May 2016, Montpellier, France. 2016

Poster de conférence hal-02605687v1

Microbial community shifts within anaerobic digesters facing ammonia inhibition: Towards early warning bioindicators?

Simon Poirier , Céline Madigou , O. Chapleur

MEWE and Biofilms IWA Specialist Conference, Sep 2016, Copenhagen, Denmark. 2016

Poster de conférence hal-02605560v1

Enhancing anaerobic digestion of biowaste under extreme ammonia concentration with support media: identification of key microbial phylotypes

S. Poirier , T. Bouchez , O. Chapleur

16th International Symposium on Microbial Ecology, Aug 2016, Montréal, Canada. pp.1, 2016

Poster de conférence hal-02604546v1