Olivier Chapleur

Publications

Article dans une revue (38)

Generic role of zeolite in enhancing anaerobic digestion and mitigating diverse inhibitions: Insights from degradation performance and microbial characteristics Xiaoqing Wang,Vincent Dürr,Angéline Guenne,Laurent Mazéas,Olivier Chapleur Journal of Environmental Management, 2024, 356, pp.120676. ⟨10.1016/j.jenvman.2024.120676⟩ Article dans une revue hal-04528643v1
Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data. Cédric Midoux,Olivier Rué,Olivier Chapleur,Ariane Bize,Valentin Louxet al. Journal of Open Source Software, 2024, 9 (103), pp.6704. ⟨10.21105/joss.06704⟩ Article dans une revue hal-04785149v1
Inhibition of anaerobic digestion by various ammonia sources resulted in subtle differences in metabolite dynamics Xiaoqing Wang,Stephany Campuzano,Angéline Guenne,Laurent Mazéas,Olivier Chapleur Chemosphere, 2024, 351, pp.141157. ⟨10.1016/j.chemosphere.2024.141157⟩ Article dans une revue hal-04528641v1
A comprehensive dataset for assessing the impact of ammonium salts and zeolite on anaerobic digestion performance, microbial dynamics, and metabolomic profiles Stephany Damaris Campuzano Zagal,Xiaoqing Wang,Nadine Derlet,Angéline Guenne,Chrystelle Bureauet al. Data in Brief, 2024, 54, pp.110357. ⟨10.1016/j.dib.2024.110357⟩ Article dans une revue (data paper) hal-04625314v1
Generic mitigating and promoting effect of zeolite on anaerobic digestion: Physicochemical and metataxonomic data Xiaoqing Wang,Vincent Dürr,Angéline Guenne,Nadine Derlet,Chrystelle Bureauet al. Data in Brief, 2024, 55, pp.110748. ⟨10.1016/j.dib.2024.110748⟩ Article dans une revue (data paper) hal-04903224v1
The electrochemical microbial tree: A new concept for wastewater treatment Morgane Hoareau,Luc Etcheverry,Olivier Chapleur,Chrystelle Bureau,Cédric Midouxet al. Chemical Engineering Journal, 2023, 454 (3), pp.140295. ⟨10.1016/j.cej.2022.140295⟩ Article dans une revue hal-03851691v1
Monitoring of cellulose-rich biowaste co-digestion with 3D fluorescence spectroscopy and mass spectrometry-based metabolomics Olivier Chapleur,Angéline Guenne,Douglas N Rutledge,Francesc Puig-Castellví Chemosphere, 2023, 349, pp.140824. ⟨10.1016/j.chemosphere.2023.140824⟩ Article dans une revue hal-04330239v1
Metataxonomics, metagenomics, metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters Francesc Puig-Castellví,Cédric Midoux,Angéline Guenne,Delphine Conteau,Oscar Franchiet al. Bioresource Technology, 2022, 346, pp.126612. ⟨10.1016/j.biortech.2021.126612⟩ Article dans une revue hal-03507080v1
Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics Vuong Quoc Hoang Ngo,François Enault,Cédric Midoux,Mahendra Mariadassou,Olivier Chapleuret al. Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16120⟩ Article dans une revue hal-03727436v1
Deterministic processes drive the microbial assembly during the recovery of an anaerobic digester after a severe ammonia shock Laëtitia Cardona,Laurent Mazéas,Olivier Chapleur Bioresource Technology, 2022, 347, pp.126432. ⟨10.1016/j.biortech.2021.126432⟩ Article dans une revue hal-03871174v1
A longitudinal study of the effect of temperature modification in full-scale anaerobic digesters – dataset combining 16S rDNA gene sequencing, metagenomics, and metabolomics data Francesc Puig-Castellví,Cédric Midoux,Angéline Guenne,Delphine Conteau,Oscar Franchiet al. Data in Brief, 2022, 41, pp.107960. ⟨10.1016/j.dib.2022.107960⟩ Article dans une revue (data paper) hal-03585428v1
Time-course analysis of metabolomic and microbial responses in anaerobic digesters exposed to ammonia Olivier Chapleur,Simon Poirier,Angéline Guenne,Kim-Anh Le Cao Chemosphere, 2021, 283, pp.131309. ⟨10.1016/j.chemosphere.2021.131309⟩ Article dans une revue hal-03479331v1
Gradual development of ammonia-induced syntrophic acetate-oxidizing activities under mesophilic and thermophilic conditions quantitatively tracked using multiple isotopic approaches Liping Hao,Lu Fan,Olivier Chapleur,Angéline Guenne,Ariane Bizeet al. Water Research, 2021, 204, ⟨10.1016/j.watres.2021.117586⟩ Article dans une revue hal-03331143v1
Rearrangement of incomplete multi-omics datasets combined with ComDim for evaluating replicate cross-platform variability and batch influence Francesc Puig-Castellví,Delphine Jouan-Rimbaud Bouveresse,Laurent Mazéas,Olivier Chapleur,Douglas N. Rutledge Chemometrics and Intelligent Laboratory Systems, 2021, 218, pp.104422. ⟨10.1016/j.chemolab.2021.104422⟩ Article dans une revue hal-03469126v1
Oxygen-reducing bidirectional microbial electrodes designed in real domestic wastewater Morgane Hoareau,Benjamin Erable,Olivier Chapleur,Cédric Midoux,Chrystelle Bureauet al. Bioresource Technology, 2021, 326, pp.0. ⟨10.1016/j.biortech.2021.124663⟩ Article dans une revue hal-03129147v1
Zeolite favours propionate syntrophic degradation during anaerobic digestion of food waste under low ammonia stress Laëtitia Cardona,Laurent Mazéas,Olivier Chapleur Chemosphere, 2021, 262, pp.127932. ⟨10.1016/j.chemosphere.2020.127932⟩ Article dans une revue hal-03344673v1
Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol Simon Poirier,Sébastien Dejean,Cédric Midoux,Kim-Anh Lê Cao,Olivier Chapleur Bioresource Technology, 2020, 316, pp.123952. ⟨10.1016/j.biortech.2020.123952⟩ Article dans une revue hal-02907466v1
Assessment of the microbial interplay during anaerobic co-digestion of wastewater sludge using common components analysis Francesc Puig-Castellví,Laëtitia Cardona,Delphine Jouan-Rimbaud Bouveresse,Christophe Cordella,Laurent Mazéaset al. PLoS ONE, 2020, 15 (5), pp.e0232324. ⟨10.1371/journal.pone.0232324⟩ Article dans une revue hal-03040625v1
Integrative Analyses to Investigate the Link between Microbial Activity and Metabolite Degradation during Anaerobic Digestion Laëtitia Cardona,Kim-Anh Lê Cao,Francesc Puig-Castellví,Chrystelle Bureau,Céline Madigouet al. Journal of Proteome Research, 2020, 19 (10), pp.3981-3992. ⟨10.1021/acs.jproteome.0c00251⟩ Article dans une revue hal-03176525v1
Effect of ammonia exposure and acclimation on the performance and the microbiome of anaerobic digestion Francesc Puig-Castellví,Laëtitia Cardona,Chrystelle Bureau,Delphine Jouan-Rimbaud Bouveresse,Christophe Cordellaet al. Bioresource Technology Reports, 2020, 11, pp.100488. ⟨10.1016/j.biteb.2020.100488⟩ Article dans une revue hal-03040710v1
Assessment of substrate biodegradability improvement in anaerobic Co-digestion using a chemometrics-based metabolomic approach Francesc Puig-Castellví,Laëtitia Cardona,Delphine Jouan-Rimbaud Bouveresse,Christophe Cordella,Laurent Mazéaset al. Chemosphere, 2020, 254, pp.77-87. ⟨10.1016/j.chemosphere.2020.126812⟩ Article dans une revue hal-03040735v1
Co-digestion of wastewater sludge: choosing the optimal blend Laëtitia Cardona,Camille Levrard,Angéline Guenne,Olivier Chapleur,Laurent Mazéas Waste Management, 2019, 87, pp.772-781. ⟨10.1016/j.wasman.2019.03.016⟩ Article dans une revue hal-02547814v1
A Generic Multivariate Framework for the Integration of Microbiome Longitudinal Studies With Other Data Types Antoine Bodein,Olivier Chapleur,Arnaud Droit,Kim-Anh Lê Cao Frontiers in Genetics, 2019, 10, ⟨10.3389/fgene.2019.00963⟩ Article dans une revue hal-02965169v1
Support media can steer methanogenesis in the presence of phenol through biotic and abiotic effects Simon Poirier,Sébastien Dejean,Olivier Chapleur Water Research, 2018, 140, pp.24 - 33. ⟨10.1016/j.watres.2018.04.029⟩ Article dans une revue hal-01890001v1
Ecological consequences of abrupt temperature changes in anaerobic digesters Céline Madigou,Kim-Anh Lê Cao,Chrystelle Bureau,Laurent Mazeas,Sébastien Dejeanet al. Chemical Engineering Journal, 2018, 361, pp.266-277. ⟨10.1016/j.cej.2018.12.003⟩ Article dans une revue hal-01960217v1
Influence of support media supplementation to reduce the inhibition of anaerobic digestion by phenol and ammonia: Effect on degradation performances and microbial dynamics Simon Poirier,Olivier Chapleur Data in Brief, 2018, 19, pp.1733-1754. ⟨10.1016/j.dib.2018.06.071⟩ Article dans une revue (data paper) hal-03871203v1
Inhibition of anaerobic digestion by phenol and ammonia: Effect on degradation performances and microbial dynamics Simon Poirier,Olivier Chapleur Data in Brief, 2018, 19, pp.2235-2239. ⟨10.1016/j.dib.2018.06.119⟩ Article dans une revue (data paper) hal-03871198v1
Characterization of a combined batch-continuous procedure for the culture of anammox biomass R. Connan,P. Dabert,S. Le Roux,O. Chapleur,G. Bridouxet al. Ecological Engineering, 2017, 106, pp.231-241. ⟨10.1016/j.ecoleng.2017.06.003⟩ Article dans une revue hal-02606365v1
Improving anaerobic digestion with support media: Mitigation of ammonia inhibition and effect on microbial communities Simon Poirier,Céline Madigou,T. Bouchez,O. Chapleur Bioresource Technology, 2017, 235, pp.229-239. ⟨10.1016/j.biortech.2017.03.099⟩ Article dans une revue hal-02607552v1
Acclimation strategy to increase phenol tolerance of an anaerobic microbiota C. Madigou,S. Poirier,C. Bureau,O. Chapleur Bioresource Technology, 2016, 216, pp.77-86. ⟨10.1016/j.biortech.2016.05.045⟩ Article dans une revue hal-02604283v1
Community shifts within anaerobic digestion microbiota facing phenol inhibition: Towards early warning microbial indicators? S. Poirier,A. Bize,C. Bureau,T. Bouchez,O. Chapleur Water Research, 2016, 100, pp.296-305. ⟨10.1016/j.watres.2016.05.041⟩ Article dans une revue hal-02604543v1
New insights into the key microbial phylotypes of anaerobic sludge digesters under different operational conditions Liping Hao,Ariane Bize,Delphine Conteau,O. Chapleur,Sophie Courtoiset al. Water Research, 2016, 102 (octobre), pp.158-169. ⟨10.1016/j.watres.2016.06.014⟩ Article dans une revue hal-01602845v1
Anaerobic digestion of biowaste under extreme ammonia concentration: Identification of key microbial phylotypes S. Poirier,Elie Desmond-Le Quéméner,C. Madigou,T. Bouchez,O. Chapleur Bioresource Technology, 2016, 207, pp.92-101. ⟨10.1016/j.biortech.2016.01.124⟩ Article dans une revue hal-02604542v1
Increasing concentrations of phenol progressively affect anaerobic digestion of cellulose and associated microbial communities O. Chapleur,Céline Madigou,Raphaël Civade,Yohan Rodolphe,Laurent Mazéaset al. Biodegradation, 2016, 27 (1), pp.15-27. ⟨10.1007/s10532-015-9751-4⟩ Article dans une revue hal-02604713v1
Asymmetrical response of anaerobic digestion microbiota to temperature changes O. Chapleur,L. Mazeas,Jean-Jacques Godon,T. Bouchez Applied Microbiology and Biotechnology, 2015, 100 (3), pp.13. ⟨10.1007/s00253-015-7046-7⟩ Article dans une revue hal-02602033v1
Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity Fan Lue,Ariane Bize,Alain Guillot,Veronique Monnet,Céline Madigouet al. The International Society of Microbiologial Ecology Journal, 2014, 8 (1), pp.88-102. ⟨10.1038/ismej.2013.120⟩ Article dans une revue hal-01204297v1
Co-inoculating ruminal content neither provides active hydrolytic microbes nor improves methanization of (13) C-cellulose in batch digesters O. Chapleur,Ariane Bize,Thibaut Serain,Laurent Mazéas,T. Bouchez FEMS Microbiology Ecology, 2014, 87 (3), pp.616-619. ⟨10.1111/1574-6941.12249⟩ Article dans une revue hal-02598975v1
SIMSISH technique does not alter the apparent isotopic composition of bacterial cells O. Chapleur,Ting-Di Wu,Jean-Luc Guerquin-Kern,Laurent Mazéas,T. Bouchez PLoS ONE, 2013, 8 (10), 8 p. ⟨10.1371/journal.pone.0077522⟩ Article dans une revue hal-00937599v1

Communication dans un congrès (8)

Digestion anaérobie mésophile des boues d'épuration municipales sous fortes concentrations de propionate de sodium en conditions semicontinues : inhibition et modifications de la communauté microbienne Joel Awinzure Agumah,Xiaojun Liu,Laura André,Camille Auneau,Sophie Thibaultet al. Journée Recherche Innovation Biogaz Méthanisation 2026, Mar 2026, Nancy, France Communication dans un congrès hal-05569770v1
Inhibition de la digestion anaérobie des boues d'épuration urbaines par le propionate de sodium : production de biogaz et évolution de la communauté microbienne dans des réacteurs semi-continus Joel Awinzure Agumah,Xiaojun Liu,Chloé Soulard,Laura André,André Pausset al. 19e Congrès de la Société Française du Génie des Procédés (SFGP 2024), Société Française du Génie des Procédés, Oct 2024, Deauville, France Communication dans un congrès hal-05306554v1
Diversity of novel viruses infecting methanogenic archaea, discovered through coupling of stable isotope probing and metagenomics Hoang Ngo,François Enault,Cédric Midoux,Mahendra Mariadassou,Olivier Chapleuret al. Phages in Paris, Phages.fr, Oct 2022, Paris, France Communication dans un congrès hal-04357012v1
Implementation of a Nanopore metagenomic workflow for time-series of complex microbial communities: MAG catalog and functional annotation Cédric Midoux,Chrystelle Bureau,Baptiste Quentin,Olivier Chapleur Journée thématique du PEPI IBIS - Métagénomique, PEPI IBIS, Nov 2022, Dijon, France Communication dans un congrès hal-04229643v1
Characterization of virus-host dynamics in anaerobic digesters under abiotic stress Marion Coves,Laurent Mazéas,Olivier Chapleur,Cédric Midoux,Ludwig E Jardillieret al. 17e Congrès National de la Société Française de Microbiologie, Société Française de Microbiologie, Oct 2022, Montpellier, France Communication dans un congrès hal-04356630v1
Analysis of incomplete multi-block datasets by ComDim Francesc Puig-Castellví,Delphine Jouan-Rimbaud Bouveresse,Laurent Mazéas,Olivier Chapleur,Douglas N. D.N. Rutledge Chimiométrie 2022, Jun 2022, Brest, France Communication dans un congrès hal-04231727v1
Unraveling the microbial community interactions in anaerobic digesterswith common components analysis Francesc Puig-Castellví,Laëtitia Cardona,Olivier Chapleur,Christophe Cordella,Delphine Jouan-Rimbaud Bouveresseet al. Chimiométrie 2019, Jan 2019, Montpellier, France Communication dans un congrès hal-02165420v1
Growing concentrations of phenol increasingly modify microbial communities' dynamics and performances' stability of anaerobic digesters O. Chapleur,Raphaël Civade,Carolina Hoyos-Hernandez,Laurent Mazéas,T. Bouchez 13th World Congress on Anaerobic Digestion : Recovering (bio) Ressources for the World, Jun 2013, Santiago de Compostella, Spain Communication dans un congrès hal-01118701v1

Poster de conférence (14)

Inhibition of anaerobic digestion of urban sewage sludge by sodium propionate: biogas production and microbial community shift in continuous reactors Joel Awinzure Agumah,Xiaojun Liu,Laura André,Sophie Thibault,Camille Auneauet al. 18th IWA World Conference On Anaerobic Digestion, Jun 2024, Istanbul, Turkey. 18th IWA World Conference on Anaerobic Digestion CONFERENCE PROCEEDINGS, 2024 Poster de conférence hal-04647882v1
Deciphering the effect of propionic acid on anaerobic digestion of sludge: gas production and microbial community structure Chloé Soulard,Xiaojun Liu,André Pauss,Laura André,Thierry Ribeiroet al. 18th IWA World Conference On Anaerobic Digestion, Jun 2024, Istanbul, Turkey. , 18th IWA World Conference on Anaerobic Digestion CONFERENCE PROCEEDINGS, 2024 Poster de conférence hal-04647849v1
Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics Vuong Quoc Hoang Ngo,François Enault,Cédric Midoux,Mahendra Mariadassou,Olivier Chapleuret al. ISME18, 18th International Symposium on Microbial Ecology, Aug 2022, Lausanne, Switzerland. Poster de conférence hal-04359643v1
Characterization of virus-host dynamics in anaerobic digesters under abiotic stress Marion Coves,Laurent Mazéas,Olivier Chapleur,Cédric Midoux,Ludwig E Jardillieret al. Viruses of Microbes, Jul 2022, Braga, Portugal. Poster de conférence hal-04356367v1
Implementation of a Nanopore metagenomic workflow for time-series of complex microbial communities: MAG catalog and functional annotation. Cédric Midoux,Chrystelle Bureau,Baptiste Quentin,Olivier Chapleur MICROBES symposium, Sep 2022, Orsay, France. Poster de conférence hal-03765009v1
Assessment of the substrate biodegrability in anaerobic co-digestion using a metabolomic approach Francesc Puig-Castellví,Laëtitia Cardona,Delphine Jouan-Rimbaud Bouveresse,Christophe Cordella,Laurent Mazéaset al. European RFMF Metabomeeting, Jan 2020, Toulouse, France Poster de conférence hal-04231789v1
Chemometric analysis of a metagenomic dataset to decipher the functional role of the micrpbiota from anaerobic digesters Francesc Puig-Castellví,Cédric Midoux,Laëtitia Cardona,Olivier Chapleur,Delphine Conteauet al. Chimiométrie 2020, Jan 2020, Liège, Belgium Poster de conférence hal-04231788v1
A molecular ecology approach using Stable Isotope Probing and metagenomics to study viruses of methanogens' diversity Context Vuong Quoc Hoang Ngo,Maximilien Sotomski,Mart Krupovic,François Enault,Olivier Chapleuret al. Phages in Grenoble, Oct 2019, Grenoble, France Poster de conférence hal-04360049v1
Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data Cedric Midoux,Olivier Rué,Olivier Chapleur,Mahendra Mariadassou,Théodore Bouchezet al. JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018 Poster de conférence hal-02737257v1
Characterization of the acclimatization of an anaerobic microbiota subjected to inhibitory phenol concentration O. Chapleur,Simon Poirier,Céline Madigou MEWE and Biofilms IWA Specialist Conference, Sep 2016, Copenhagen, Denmark. 2016 Poster de conférence hal-02605559v1
Acclimation of an anaerobic microbiota subjected to inhibitory phenol concentration O. Chapleur,S. Poirier,C. Madigou 16th International Symposium on Microbial Ecology, Aug 2016, Montréal, Canada. 2016 Poster de conférence hal-02605556v1
Inhibition de la digestion anaérobie par N-NH3 : étude de la dynamique microbienne et approche métabolomique Lénaïck Rouillac,O. Chapleur,Simon Poirier,Céline Madigou,Angéline Guenneet al. 10èmes journées scientifiques du RFMF, May 2016, Montpellier, France. 2016 Poster de conférence hal-02605687v1
Microbial community shifts within anaerobic digesters facing ammonia inhibition: Towards early warning bioindicators? Simon Poirier,Céline Madigou,O. Chapleur MEWE and Biofilms IWA Specialist Conference, Sep 2016, Copenhagen, Denmark. 2016 Poster de conférence hal-02605560v1
Enhancing anaerobic digestion of biowaste under extreme ammonia concentration with support media: identification of key microbial phylotypes S. Poirier,T. Bouchez,O. Chapleur 16th International Symposium on Microbial Ecology, Aug 2016, Montréal, Canada. pp.1, 2016 Poster de conférence hal-02604546v1

Ouvrages (1)

Quelle énergie durable pour demain ? Nicole Sardat,Lynda Aissani,Christine Argillier,Romain Roy,Jacques Granieret al. Irstea, pp.70, 2012 Ouvrages hal-02597378v1

Chapitre d'ouvrage (1)

Apport des développements méthodologiques multi-omiques en méthanisation Jérôme Hamelin,Kim Milferstedt,Olivier Chapleur,Elie Desmond-Le Quéméner René Moletta; Romain Cresson. La méthanisation, TEC&DOC, 2024, 978-2-7430-2673-8 Chapitre d'ouvrage hal-04664478v1

Rapport (1)

Maintien de la capacité d’infiltration des sols soumis aux eaux usées traitées : évaluation de l’intérêt de l’apport de matière carbonée (broyat de bois) Laura Delgado-Gonzalez,Chrystelle Bureau,Olivier Chapleur,Vivien Dubois,Aurélie Fildieret al. Inrae - UR REVERSAAL. 2023 Rapport hal-04307438v2

Thèse (2)

Ingénierie écologique des communautés microbiennes de méthanisation des déchets ligno-cellulosiques O. Chapleur Sciences de l'environnement. Doctorat Sciences de l'Environnement, AgroParisTech, 2012. Français. ⟨NNT : ⟩ Thèse tel-02605449v1
Ingénierie écologique des communautés microbiennes de méthanisation des déchets ligno-cellulosiques Olivier Chapleur Sciences de l'environnement. AgroParisTech, 2012. Français. ⟨NNT : 2012AGPT0046⟩ Thèse pastel-00945512v1

HDR (1)

From describing to managing environmental biotechnologies, through a combination of molecular ecology and biostatistics Olivier Chapleur Environmental Sciences. Université Paris Saclay, 2019 HDR tel-04459796v1

Logiciel (1)

Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data Cédric Midoux,Olivier Rué,Olivier Chapleur,Ariane Bize,Valentin Louxet al. 2024, ⟨swh:1:rel:35d2caacc87474efa1f1e277f5eb13352962793d⟩ Logiciel hal-04304559v2