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Olivier Filangi

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Validation of carbon isotopologue distribution measurements by GC-MS and application to 13 C-metabolic flux analysis of the tricarboxylic acid cycle in Brassica napus leaves

Younès Dellero , Solenne Berardocco , Cécilia Bergès , Olivier Filangi , Alain Bouchereau
Frontiers in Plant Science, 2023, 13, pp.885051. ⟨10.3389/fpls.2022.885051⟩
Journal articles hal-03932315v1
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Evaluation of GC/MS-Based 13C-Positional Approaches for TMS Derivatives of Organic and Amino Acids and Application to Plant 13C-Labeled Experiments

Younès Dellero , Olivier Filangi , Alain Bouchereau
Metabolites, 2023, 13 (4), pp.466. ⟨10.3390/metabo13040466⟩
Journal articles hal-04045238v1
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Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors

Maxime Delmas , Olivier Filangi , Christophe Duperier , Nils Paulhe , Florence Vinson
GigaScience, 2022, 12, pp.giad065. ⟨10.1093/gigascience/giad065⟩
Journal articles hal-04223426v1
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FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases

Maxime Delmas , Olivier Filangi , Nils Paulhe , Florence Vinson , Christophe Duperier
Bioinformatics, 2021, 37 (21), pp.3896-3904. ⟨10.1093/bioinformatics/btab627⟩
Journal articles hal-03361495v1
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Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi
Plant Journal, 2019, 98 (3), pp.434-447. ⟨10.1111/tpj.14228⟩
Journal articles hal-02019346v1
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AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée

Pierre Adenot , Stéphane Bansard , David Benaben , Veronique Brunaud , Christophe Caron
Cahier des Techniques de l'INRA, 2018, pp.1-7
Journal articles hal-02097192v1
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QTL detection for coccidiosis (Eimeria tenella) resistance in a Fayoumi × Leghorn F2 cross, using a medium-density SNP panel

Nicola Bacciu , Bertrand Bed'Hom , Olivier Filangi , Hélène Romé , David Gourichon
Genetics Selection Evolution, 2014, 46 (1), pp.14. ⟨10.1186/1297-9686-46-14⟩
Journal articles hal-01189901v1
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Genome-wide interval mapping using SNPs identifies new QTL for growth, body composition and several physiological variables in an F-2 intercross between fat and lean chicken lines

Olivier Demeure , Michel Jacques M.J. Duclos , Nicola Bacciu , Guillaume Le Mignon , Olivier Filangi
Genetics Selection Evolution, 2013, 45, online (september), Non paginé. ⟨10.1186/1297-9686-45-36⟩
Journal articles hal-01207752v1
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Graphics Processing Unit-Accelerated Quantitative Trait Loci Detection

Guillaume Chapuis , Olivier Filangi , Jean Michel J. M. Elsen , Dominique Lavenier , Pascale Le Roy
Journal of Computational Biology, 2013, 20 (9), pp.672-686. ⟨10.1089/cmb.2012.0136⟩
Journal articles hal-00903794v1
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Detection of QTL controlling metabolism, meat quality, and liver quality traits of the overfed interspecific hybrid mule duck

M. Kileh-Wais , J M Elsen , A Vignal , K Feves , F Vignoles
Journal of Animal Science, 2013, 91 (2), pp.588-604. ⟨10.2527/jas.2012-5411⟩
Journal articles hal-01702555v1
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Comparison of the analyses of the XVth QTLMAS common dataset II: QTL analysis

Olivier Demeure , Olivier Filangi , Jean Michel Elsen , Pascale Le Roy
BMC Proceedings, 2012, 6, online (Suppl. 2), Non paginé. ⟨10.1186/1753-6561-6-S2-S2⟩
Journal articles hal-01210358v1
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Comparison of analyses of the XVth QTLMAS common dataset III: Genomic Estimations of Breeding Values

Pascale Le Roy , Olivier Filangi , Olivier Demeure , Jean Michel Elsen
BMC Proceedings, 2012, 6, online (Suppl. 2), Non paginé. ⟨10.1186/1753-6561-6-S2-S3⟩
Journal articles hal-01210357v1
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Statistical properties of interval mapping methods on quantitative trait loci location: impact on QTL/eQTL analyses

Xiaoqiang Wang , Hélène Gilbert , Carole Moreno-Romieux , Olivier Filangi , Jean Michel Elsen
BMC Genetics, 2012, 13 (online), Non paginé. ⟨10.1186/1471-2156-13-29⟩
Journal articles hal-01207748v1
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Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken

Yuna Blum , Guillaume Le Mignon , David Causeur , Olivier Filangi , Colette Désert
BMC Genomics, 2011, 12 (november), pp.8. ⟨10.1186/1471-2164-12-567⟩
Journal articles hal-00730144v1
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QTL detection for a medium density SNP panel: comparison of different LD and LA methods

Olivier O. Demeure , Nicola Bacciu , Olivier O. Filangi , Pascale P. Le Roy
BMC Proceedings, 2010, 4 (Suppl 1), Non paginé. ⟨10.1186/1753-6561-4-S1-S10⟩
Journal articles hal-02655598v1
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A fast algorithm for estimating transmission probabilities in QTL detection designs with dense maps

Jean Michel Elsen , Olivier Filangi , Hélène Gilbert , Pascale Le Roy , Carole Moreno-Romieux
Genetics Selection Evolution, 2009, 41, online (november), Non paginé. ⟨10.1186/1297-9686-41-50⟩
Journal articles hal-01193461v1
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BioMAJ: a flexible framework for databanks synchronization and processing

Olivier Filangi , Yoann Beausse , Anthony Assi , Ludovic Legrand , Jean-Marc Larré
Bioinformatics, 2008, 24 (16), pp.1823-1825. ⟨10.1093/bioinformatics/btn325⟩
Journal articles inria-00327502v1

Structural and functional evolutionary dynamics of duplicated genes and genomes in nascent and natural B. napus

Mathieu Rousseau-Gueutin , Jérémy Lucas , France Denoeud , Julie Ferreira de Carvalho , Zhesi He
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint-Malo, France
Conference papers hal-03318226v1

From diploids to a huge diversity ready-to-use for oilseed rape breeding.

Sophie Paillard , Maryse Lodé-Taburel , Gwenn Trotoux , Frederique Eber , Marie-Madeleine Gilet
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2018, Saint-Malo, France
Conference papers hal-03318160v1

Cytonuclear interactions overcome inter-genomic conflict resulting from interspecific hybridization and genome doubling

Julie Ferreira de Carvalho , Jérémy Lucas , Cyril Falentin , Gwenaëlle Deniot , Olivier Filangi
Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France
Conference papers hal-03318235v1

How a polyploid becomes a new species: example from the Brassica model.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , J. Lucas , France Denoeud , Fabrice Legeai
International Conference on Environmental and Agronomical Genomics, 2018, Paris, France
Conference papers hal-03318223v1

Integration of Linked Data into Galaxy using Askomics

Xavier Garnier , Olivier Dameron , Olivier Filangi , Fabrice Legeai , Anthony Bretaudeau
Galaxy Community Conference, Jun 2017, Montpellier, France
Conference papers hal-01576870v1
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AskOmics, a web tool to integrate and query biological data using semantic web technologies

Xavier Garnier , Anthony Bretaudeau , Olivier Filangi , Fabrice Legeai , Anne Siegel
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. pp.1
Conference papers hal-01577425v1

Genome-wide interval mapping using SNP identifies new QTL for growth, body composition, meat quality and several physiological parameters in an F2 intercross between Fat and Lean chicken lines

Olivier Demeure , Michel Jacques M.J. Duclos , Nicola Bacciu , Guillaume Le Mignon , Olivier Filangi
XXI Plant & Animal Genome (PAG), Jan 2013, San Diego, United States
Conference papers hal-01210360v1

Utilisation de SNP pour la cartographie de QTL de croissance, composition de la carcasse et qualité de la viande dans un croisement F2 de lignées de poulet grasse et maigre

Olivier Demeure , Michel Jacques M.J. Duclos , Nicola Bacciu , Guillaume Le Mignon , Olivier Filangi
10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France
Conference papers hal-01210361v1

Accelerating QTL mapping with graphics cards

Guillaume Chapuis , Olivier Filangi , Jean Michel Elsen , Dominique Lavenier , Pascale Le Roy
Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. 516 p
Conference papers hal-01363562v1
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Linkage analysis of the XVIth QTLMAS simulated dataset using QTLMAP

Olivier Demeure , Olivier Filangi , Hélène Gilbert , Carole Moreno-Romieux , Andres Legarra
16th QTLMAP, AGRIS. Algero, ITA. Università degli Studi di Sassari (UniSS), ITA., May 2012, Alghero, Italy
Conference papers hal-01210359v1
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Integrating QTL controlling fatness, lipid metabolites and gene expressions to genetically dissect the adiposity complex trait in a meat chicken cross

Yuna Blum , Olivier O. Demeure , Colette Désert , Hervé Guillou , J Bertrand-Michel
62. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2011, Stavanger, Norway
Conference papers hal-02748764v1

GPU Accelerted QTLMap

Guillaume Chapuis , Olivier Filangi , Pascale Le Roy , Jean-Michel Elsen , Dominique Lavenier
The 15th QTL-MAS workshop, May 2011, -, France
Conference papers hal-00637840v1
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XVth QTLMAS: simulated dataset

Jean Michel Elsen , Simon Tesseydre , Olivier Filangi , Pascale Le Roy , Olivier Demeure
15. European workshop on QTL mapping and marker assisted selection (QTLMAS), May 2011, Rennes, France. ⟨10.1186/1753-6561-6-S2-S1⟩
Conference papers hal-01210304v1

QTLMap, a software for QTL detection in outbred populations

Olivier Filangi , Carole Moreno-Romieux , Hélène Gilbert , Andres Legarra , Pascale Le Roy
9. World Congress on Genetics Applied to Livestock Production, Aug 2010, Leipzig, France
Conference papers hal-01193540v1

The repercussions of statistical properties of interval mapping methods on eQTL detection

Xiaoqiang Wang , Jean Michel Elsen , Hélène Gilbert , Carole Moreno-Romieux , Olivier Filangi
60. Annual Meeting of the European Association for Animal Production, Aug 2009, Barcelone, Spain
Conference papers hal-01193475v1

QTLMAP, a software for the detection of QTL in full and half sib families

Jean Michel J. M. Elsen , Olivier O. Filangi , Hélène Gilbert , Andres Legarra , Pascale P. Le Roy
60. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2009, Barcelone, Spain
Conference papers hal-02755207v1
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A project-scale map of metadata to improve future data management

Mélanie Pétéra , Cecile Cabasson , Blandine Comte , Christophe Duperier , Olivier Filangi
Analytics 2022, Sep 2022, Nantes, France.
Conference poster hal-03776494v1
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Metabolite reporting in large-scale studies within different metabolomics communities: DO WE SPEAK THE SAME LANGUAGE?

Ghina Hajjar , David Benaben , Nils Paulhe , Christophe Duperier , Olivier Filangi
Analytics 2022, Sep 2022, Nantes, France
Conference poster hal-03775474v1

Integration and query of biological datasets with Semantic Web technologies: AskOmics

Aurélie Evrard , Charles Bettembourg , Mélanie Jubault , Olivier Dameron , Olivier Filangi
Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2016), Jun 2016, Lyon, France
Conference poster hal-01391087v1
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Comparative genomic analysis of Clubroot resistance in the Brassicaceae family

Aurélie Evrard , Charles Bettembourg , Olivier Dameron , Olivier Filangi , Anthony Bretaudeau
Brassica2016, Oct 2016, Melbourne, Australia.
Conference poster hal-01391707v1

Finding gene to genome epistatic effects

Olivier Filangi , Nicola Bacciu , Olivier Demeure , Andres Legarra , Jean Michel Elsen
63. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2012, Bratislava, Slovakia. Wageningen Academic Publishers, Annual Meeting of the European Association for Animal Production, 18, 2012, Annual Meeting of the European Association for Animal Production
Conference poster hal-01210736v1
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QGP: Quantitative Genetics Platform. A high performance computing solution for quantitative genetics software

Misharl Monsoor , André Neau , Martin Souchal , Sylvie Nugier , François Laperruque
Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. LIRMM UMR CNRS/UM2 5506, 2012, Journées Ouvertes de Biologie, Informatique et Mathématiques
Conference poster hal-02749290v1

Genome-Wide QTL detection for growth, body composition and quality related traits in chicken

Olivier O. Demeure , Michel Jacques M.J. Duclos , Cécile Berri , Nicola Bacciu , Frederique Pitel
XXXII International Conference on Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics
Conference poster hal-02751791v1