Olivier Filangi

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Publications

Publications

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Validation of carbon isotopologue distribution measurements by GC-MS and application to 13 C-metabolic flux analysis of the tricarboxylic acid cycle in Brassica napus leaves

Younès Dellero , Solenne Berardocco , Cécilia Bergès , Olivier Filangi , Alain Bouchereau

Frontiers in Plant Science, 2023, 13, pp.885051. ⟨10.3389/fpls.2022.885051⟩

Article dans une revue hal-03932315v1
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Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors

Maxime Delmas , Olivier Filangi , Christophe Duperier , Nils Paulhe , Florence Vinson et al.

GigaScience, 2023, 12, pp.giad065. ⟨10.1093/gigascience/giad065⟩

Article dans une revue hal-04223426v1
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Evaluation of GC/MS-Based 13C-Positional Approaches for TMS Derivatives of Organic and Amino Acids and Application to Plant 13C-Labeled Experiments

Younès Dellero , Olivier Filangi , Alain Bouchereau

Metabolites, 2023, 13 (4), pp.466. ⟨10.3390/metabo13040466⟩

Article dans une revue hal-04045238v1
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FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases

Maxime Delmas , Olivier Filangi , Nils Paulhe , Florence Vinson , Christophe Duperier et al.

Bioinformatics, 2021, 37 (21), pp.3896-3904. ⟨10.1093/bioinformatics/btab627⟩

Article dans une revue hal-03361495v2
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Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi et al.

The Plant Journal, 2019, 98 (3), pp.434-447. ⟨10.1111/tpj.14228⟩

Article dans une revue hal-02019346v1
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AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée

Pierre Adenot , Stéphane Bansard , David Benaben , Veronique Brunaud , Christophe Caron et al.

Cahier des Techniques de l'INRA, 2018, N° Spécial: Données de la recherche, 7 p

Article dans une revue hal-02097192v1
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QTL detection for coccidiosis (Eimeria tenella) resistance in a Fayoumi × Leghorn F2 cross, using a medium-density SNP panel

Nicola Bacciu , Bertrand Bed'Hom , Olivier Filangi , Hélène Romé , David Gourichon et al.

Genetics Selection Evolution, 2014, 46 (1), pp.14. ⟨10.1186/1297-9686-46-14⟩

Article dans une revue hal-01189901v1
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Detection of QTL controlling metabolism, meat quality, and liver quality traits of the overfed interspecific hybrid mule duck

M. Kileh-Wais , J.M. Elsen , A. Vignal , K. Feves , F. Vignoles et al.

Journal of Animal Science, 2013, 91 (2), pp.588-604. ⟨10.2527/jas.2012-5411⟩

Article dans une revue hal-01702555v1
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Genome-wide interval mapping using SNPs identifies new QTL for growth, body composition and several physiological variables in an F-2 intercross between fat and lean chicken lines

Olivier Demeure , Michel Jacques M.J. Duclos , Nicola Bacciu , Guillaume Le Mignon , Olivier Filangi et al.

Genetics Selection Evolution, 2013, 45, online (september), Non paginé. ⟨10.1186/1297-9686-45-36⟩

Article dans une revue hal-01207752v1
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Graphics Processing Unit-Accelerated Quantitative Trait Loci Detection

Guillaume Chapuis , Olivier Filangi , Jean Michel J. M. Elsen , Dominique Lavenier , Pascale Le Roy

Journal of Computational Biology, 2013, 20 (9), pp.672-686. ⟨10.1089/cmb.2012.0136⟩

Article dans une revue hal-00903794v1
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Comparison of the analyses of the XVth QTLMAS common dataset II: QTL analysis

Olivier Demeure , Olivier Filangi , Jean Michel Elsen , Pascale Le Roy

BMC Proceedings, 2012, 6, online (Suppl. 2), Non paginé. ⟨10.1186/1753-6561-6-S2-S2⟩

Article dans une revue hal-01210358v1
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Comparison of analyses of the XVth QTLMAS common dataset III: Genomic Estimations of Breeding Values

Pascale Le Roy , Olivier Filangi , Olivier Demeure , Jean Michel Elsen

BMC Proceedings, 2012, 6, online (Suppl. 2), Non paginé. ⟨10.1186/1753-6561-6-S2-S3⟩

Article dans une revue hal-01210357v1
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Statistical properties of interval mapping methods on quantitative trait loci location: impact on QTL/eQTL analyses

Xiaoqiang Wang , Hélène Gilbert , Carole Moreno-Romieux , Olivier Filangi , Jean Michel Elsen et al.

BMC Genetics, 2012, 13 (online), Non paginé. ⟨10.1186/1471-2156-13-29⟩

Article dans une revue hal-01207748v1
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Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken

Yuna Blum , Guillaume Le Mignon , David Causeur , Olivier Filangi , Colette Désert et al.

BMC Genomics, 2011, 12 (november), pp.8. ⟨10.1186/1471-2164-12-567⟩

Article dans une revue hal-00730144v1
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QTL detection for a medium density SNP panel: comparison of different LD and LA methods

Olivier O. Demeure , Nicola Bacciu , Olivier O. Filangi , Pascale P. Le Roy

BMC Proceedings, 2010, 4 (Suppl 1), Non paginé. ⟨10.1186/1753-6561-4-S1-S10⟩

Article dans une revue hal-02655598v1
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A fast algorithm for estimating transmission probabilities in QTL detection designs with dense maps

Jean Michel Elsen , Olivier Filangi , Hélène Gilbert , Pascale Le Roy , Carole Moreno-Romieux

Genetics Selection Evolution, 2009, 41, online (november), Non paginé. ⟨10.1186/1297-9686-41-50⟩

Article dans une revue hal-01193461v1
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BioMAJ: a flexible framework for databanks synchronization and processing

Olivier Filangi , Yoann Beausse , Anthony Assi , Ludovic Legrand , Jean-Marc Larré et al.

Bioinformatics, 2008, 24 (16), pp.1823-1825. ⟨10.1093/bioinformatics/btn325⟩

Article dans une revue inria-00327502v1

HOW DOES OXIDATION MODULATE POLYPHENOL ANTIOXIDANT PROPERTIES? INSIGHTS FROM APPLE BY-PRODUCTS FOR FOOD PRESERVATION.

Coline Bourseau , Gildas Lebail , Agnes Gacel , Olivier Filangi , Kévin Billet et al.

ICP2025 - XXXII International Conference on Polyphenols, University of Turku, Jul 2025, Turku (FI), Finland

Communication dans un congrès hal-05515494v1

From waste to food preservation: exploring the antioxydant potential of oxidised apple pomace polyphenols

Coline Bourseau , Gildas Lebail , Agnes Gacel , Olivier Filangi , Kévin Billet et al.

4th International Conference BACIF 2025 (Biologically Active Compounds in Food), Lodz University of Technology, Jun 2025, LODZ, Poland

Communication dans un congrès hal-05515459v1

AdducTrackR, From Computational to Reactional: Initial Insights into Polyphenol-Protein Adducts in LC-HRMS Data

Kévin Billet , Olivier Filangi , Sylvain Guyot

XXXII èmes International Conference on Polyphenols, Groupe Polyphénols; Juah-Pekka Salminen, Turku University, Jul 2025, Turku (FI), Finland

Communication dans un congrès hal-05200305v1
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MetaSaurus : towards FAIR metabolomics analyses

Olivier Filangi , Marie Lefebvre

Séminaire semantic linked data, Oct 2023, Cap Agde, France

Communication dans un congrès hal-04613582v1

Cytonuclear interactions remain stable during allopolyploid evolution despite repeated wholegenome duplications

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi et al.

21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint Malo, France

Communication dans un congrès hal-04665569v1

Structural and functional evolutionary dynamics of duplicated genes and genomes in nascent and natural B. napus

Mathieu Rousseau-Gueutin , Jérémy Lucas , France Denoeud , Julie Ferreira de Carvalho , Zhesi He et al.

21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint-Malo, France

Communication dans un congrès hal-03318226v1

How a polyploid becomes a new species: example from the Brassica model.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , J. Lucas , France Denoeud , Fabrice Legeai et al.

International Conference on Environmental and Agronomical Genomics, 2018, Paris, France

Communication dans un congrès hal-03318223v1

From diploids to a huge diversity ready-to-use for oilseed rape breeding.

Sophie Paillard , Maryse Lodé-Taburel , Gwenn Trotoux , Frederique Eber , Marie-Madeleine Gilet et al.

21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2018, Saint-Malo, France

Communication dans un congrès hal-03318160v1

Cytonuclear interactions overcome inter-genomic conflict resulting from interspecific hybridization and genome doubling

Julie Ferreira de Carvalho , Jérémy Lucas , Cyril Falentin , Gwenaëlle Deniot , Olivier Filangi et al.

Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France

Communication dans un congrès hal-03318235v1

Integration of Linked Data into Galaxy using Askomics

Xavier Garnier , Olivier Dameron , Olivier Filangi , Fabrice Legeai , Anthony Bretaudeau

Galaxy Community Conference, Jun 2017, Montpellier, France

Communication dans un congrès hal-01576870v1
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AskOmics, a web tool to integrate and query biological data using semantic web technologies

Xavier Garnier , Anthony Bretaudeau , Olivier Filangi , Fabrice Legeai , Anne Siegel et al.

JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. pp.1

Communication dans un congrès hal-01577425v1

Utilisation de SNP pour la cartographie de QTL de croissance, composition de la carcasse et qualité de la viande dans un croisement F2 de lignées de poulet grasse et maigre

Olivier Demeure , Michel Jacques M.J. Duclos , Nicola Bacciu , Guillaume Le Mignon , Olivier Filangi et al.

10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France

Communication dans un congrès hal-01210361v1

Genome-wide interval mapping using SNP identifies new QTL for growth, body composition, meat quality and several physiological parameters in an F2 intercross between Fat and Lean chicken lines

Olivier Demeure , Michel Jacques M.J. Duclos , Nicola Bacciu , Guillaume Le Mignon , Olivier Filangi et al.

XXI Plant & Animal Genome (PAG), Jan 2013, San Diego, United States

Communication dans un congrès hal-01210360v1

Accelerating QTL mapping with graphics cards

Guillaume Chapuis , Olivier Filangi , Jean Michel Elsen , Dominique Lavenier , Pascale Le Roy

Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. 516 p

Communication dans un congrès hal-01363562v1
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XVth QTLMAS: simulated dataset

Jean Michel Elsen , Simon Tesseydre , Olivier Filangi , Pascale Le Roy , Olivier Demeure

15. European workshop on QTL mapping and marker assisted selection (QTLMAS), May 2011, Rennes, France. ⟨10.1186/1753-6561-6-S2-S1⟩

Communication dans un congrès hal-01210304v1
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Linkage analysis of the XVIth QTLMAS simulated dataset using QTLMAP

Olivier Demeure , Olivier Filangi , Hélène Gilbert , Carole Moreno-Romieux , Andres Legarra et al.

16th QTLMAP, AGRIS. Algero, ITA. Università degli Studi di Sassari (UniSS), ITA., May 2012, Alghero, Italy

Communication dans un congrès hal-01210359v1

GPU Accelerted QTLMap

Guillaume Chapuis , Olivier Filangi , Pascale Le Roy , Jean-Michel Elsen , Dominique Lavenier

The 15th QTL-MAS workshop, May 2011, -, France

Communication dans un congrès hal-00637840v1
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Integrating QTL controlling fatness, lipid metabolites and gene expressions to genetically dissect the adiposity complex trait in a meat chicken cross

Yuna Blum , Olivier O. Demeure , Colette Désert , Hervé Guillou , J Bertrand-Michel et al.

62. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2011, Stavanger, Norway

Communication dans un congrès hal-02748764v1

QTLMap, a software for QTL detection in outbred populations

Olivier Filangi , Carole Moreno-Romieux , Hélène Gilbert , Andres Legarra , Pascale Le Roy et al.

9. World Congress on Genetics Applied to Livestock Production, Aug 2010, Leipzig, Germany

Communication dans un congrès hal-01193540v1

The repercussions of statistical properties of interval mapping methods on eQTL detection

Xiaoqiang Wang , Jean Michel Elsen , Hélène Gilbert , Carole Moreno-Romieux , Olivier Filangi et al.

60. Annual Meeting of the European Association for Animal Production, Aug 2009, Barcelone, Spain

Communication dans un congrès hal-01193475v1

QTLMAP, a software for the detection of QTL in full and half sib families

Jean Michel J. M. Elsen , Olivier O. Filangi , Hélène Gilbert , Andres Legarra , Pascale P. Le Roy et al.

60. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2009, Barcelone, Spain

Communication dans un congrès hal-02755207v1
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FORVM Plants

Guillaume Laisney , David Benaben , Thomas Bellembois , Kevin Billet , Alain Bouchereau et al.

RFMF 2025 - 17èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, Jun 2025, Paris, France. pp.1-1, 2025

Poster de conférence hal-05121234v1
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Metabolomic Semantic Datalake : A Scalable Approach to Managing Metabolomics Semantic Resources

Guillaume Laisney , David Benaben , Christophe Duperier , Matéo Boudet , Franck Giacomoni et al.

JOBIM 2024 - Journées Ouvertes en Biologie, Informatique, et Mathématiques, Jun 2024, Toulouse, France. pp.1-1, 2024

Poster de conférence hal-04655538v1
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Oligopeptide-matching : a computational solution that match polyphenol-peptides adducts in HRMS-DATA

Olivier Filangi , Kévin Billet , Sylvain Guyot

16èmes Journées Scientifiques RFMF, Jun 2024, Saint Malo (Palais du Grand Large), France. 2024

Poster de conférence hal-04922708v1
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A project-scale map of metadata to improve future data management

Mélanie Pétéra , Cecile Cabasson , Blandine Comte , Christophe Duperier , Olivier Filangi et al.

Analytics 2022, Sep 2022, Nantes, France.

Poster de conférence hal-03776494v1
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Metabolite reporting in large-scale studies within different metabolomics communities: DO WE SPEAK THE SAME LANGUAGE?

Ghina Hajjar , David Benaben , Nils Paulhe , Christophe Duperier , Olivier Filangi et al.

Analytics 2022, Sep 2022, Nantes, France

Poster de conférence hal-03775474v1
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Comparative genomic analysis of Clubroot resistance in the Brassicaceae family

Aurélie Evrard , Charles Bettembourg , Olivier Dameron , Olivier Filangi , Anthony Bretaudeau et al.

Brassica2016, Oct 2016, Melbourne, Australia.

Poster de conférence hal-01391707v1

Integration and query of biological datasets with Semantic Web technologies: AskOmics

Aurélie Evrard , Charles Bettembourg , Mélanie Jubault , Olivier Dameron , Olivier Filangi et al.

Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2016), Jun 2016, Lyon, France

Poster de conférence hal-01391087v1
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QGP: Quantitative Genetics Platform. A high performance computing solution for quantitative genetics software

Misharl Monsoor , André Neau , Martin Souchal , Sylvie Nugier , François Laperruque et al.

Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. LIRMM UMR CNRS/UM2 5506, 2012, Journées Ouvertes de Biologie, Informatique et Mathématiques

Poster de conférence hal-02749290v1

Finding gene to genome epistatic effects

Olivier Filangi , Nicola Bacciu , Olivier Demeure , Andres Legarra , Jean Michel Elsen et al.

63. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2012, Bratislava, Slovakia. Wageningen Academic Publishers, Annual Meeting of the European Association for Animal Production, 18, 2012, Annual Meeting of the European Association for Animal Production

Poster de conférence hal-01210736v1

Genome-Wide QTL detection for growth, body composition and quality related traits in chicken

Olivier O. Demeure , Michel Jacques M.J. Duclos , Cécile Berri , Nicola Bacciu , Frederique Pitel et al.

XXXII International Conference on Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics

Poster de conférence hal-02751791v1