Olivier Langella

Identifiants chercheurs

IdHAL :

olivier-langella

ORCID :

0000-0002-3039-6718

IdRef :

253123836

VIAF :

107161512225870562508

Publications

Poster de conférence (17)

Proteograph, typst package for proteomics data visualization directly from JSON Olivier Langella EuBIC-MS Winter School 2026, Jan 2026, Harrachov, Czech Republic Poster de conférence hal-05451903v1
Identifying Single Amino Acid Variant with SpecOMS an OpenModification Search engine Olivier Langella,Rémy Séraphin,Luciana de Oliveira,Melisande Blein-Nicolas EUPA 2025, Jun 2025, Saint Malo (FR), France Poster de conférence hal-05108269v1
MCQR: Enhancing the processing and analysis of quantitative proteomics data by incorporating chromatography and mass spectrometry information Thierry Balliau,Anne Aubert-Frambourg,Olivier Langella,Martin-Magniette Marie-Laure,Michel Zivyet al. EUPA 2025 saint-Malo, Jun 2025, Saint Malo (FR), France Poster de conférence hal-05113649v1
PROTEOBENCH, An open platform for comparing proteomics data analysis workflows Robbe Devreese,Caroline Jachmann,Bart van Puyvelde,Holda A Anagho-Mattanovich,Witold E Wolskiet al. HUPO 2025, Nov 2025, Toronto, Canada Poster de conférence hal-05357004v1
Large scale plant protein turnover measurement Willy Vincent Bienvenut,Marie-Hélène Andrieu,Olivier Langella,Thierry Balliau,Sophie Colombieet al. Annual ASMS conference, Jun 2024, Anaheim (CA), United States Poster de conférence hal-04590280v1
i2MassChroQ : full native timsTOF PASEF-enabled quantitative proteomics Olivier Langella,Thierry Balliau,Marlène Davanture,Mélisande Blein-Nicolas,Filippo Rusconi EuBIC-MS Winter School 2024, Jan 2024, Winterberg, Germany Poster de conférence hal-04321638v1
Merging SpecOMS and X!Tandem identification results using machine learning algorithm in i2MassChroQ Olivier Langella,Thierry Balliau,Marlène Davanture,Filippo Rusconi,Melisande Blein-Nicolaset al. ProteoAix 2023 the 3rd Joint Meeting of Spanish, French, and Portuguese Proteomics Societies, Jun 2023, Aix en Provence, France Poster de conférence hal-04103233v1
Plateforme d'Analyse Protéomique de Paris Sud-Ouest (PAPPSO) Céline Henry,Thierry Balliau,Willy Vincent Bienvenut,Marlène Davanture,Olivier Langellaet al. Journées scientifiques Biosphera, Oct 2022, Palaiseau, France Poster de conférence hal-03878417v1
X!TandemPipeline++: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format Olivier Langella,Thomas Renne,Thierry Balliau,Marlène Davanture,Sven Brehmeret al. 70th ASMS Conference on Mass Spectrometry and Allied Topics ( ASMS 2022 ), Jun 2022, Minneapolis, United States. Poster de conférence hal-03687564v1
Open Modification Search using SpecOMS and i2MassChroQ Olivier Langella,Luciana de Oliveira,Michel Zivy,Melisande Blein-Nicolas,Dominique Tessier analytics 2022, Sep 2022, Nantes, France Poster de conférence hal-03735820v1
Upgrading X!TandemPipeline and MassChroQ for fast and accurate timsTOF native raw data support for quantitative proteomics Olivier Langella,Thomas Renne,Thierry Balliau,Marlène Davanture,Sven Brehmeret al. ProteoVilamoura 2022, May 2022, Vilamoura, Portugal Poster de conférence hal-03687443v1
i2MassChroQ: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format Olivier Langella,Thomas Renne,Thierry Balliau,Marlène Davanture,Sven Brehmeret al. Analytics 2022, Sep 2022, Nantes, France Poster de conférence hal-03776788v1
Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution Willy Vincent Bienvenut,Liam Le Goffic,Olivier Langella,Thierry Balliau,Melisande Blein-Nicolas Analytics 2022, Sep 2022, Nantes, France Poster de conférence hal-03773594v1
Sub optimal 15N metabolic labelling in plant to determine protein turnovers: A new look at the isotopic distribution Willy Vincent Bienvenut,Olivier Langella,Thierry Baillau,Filippo Rusconi,Marlène Davantureet al. InPPO meeting, Mar 2021, Vancouvert, Canada Poster de conférence hal-03683573v1
X!TandemPipeline new version brings native support of timsTOF raw data Thomas Renne,Filippo Rusconi,Michel Zivy,Olivier Langella JOBIM 2020, Jul 2020, Montpellier, France Poster de conférence hal-03687673v1
MassChroQ : A versatile tool for mass spectrometry quantification Edlira Nano,Benoit Valot,Olivier Langella,Ludovic Bonhomme,Mélisande Bleinet al. Final COST meeting : Plant Proteomics in Europe, 2011, May 2011, Dijon, France Poster de conférence hal-03663220v1
phpMyCampus, gestion d'un parc informatique à l'échelle d'un campus Olivier Langella,Gilles Agogué,Philippe Peynot JRES (Journées réseaux de l'enseignement et de la recherche ) 2003, Nov 2003, Lille, France. 2003 Poster de conférence hal-04802134v1

Autre publication scientifique (2)

Résister au mouvement anti-science américain: libérons-nous des GAFAM et sécurisons nos données scientifiques Béatrice Albert,Christine Dillmann,Matthieu Falque,Olivier Langella,Camille Noûs 2025 Autre publication scientifique hal-05021729v1
Resist the American anti-science movement: free ourselves from the GAFAMs and secure our scientific data Béatrice Albert,Christine Dillmann,Matthieu Falque,Olivier Langella,Camille Noûs 2025 Autre publication scientifique hal-05021727v1

Article dans une revue (22)

MCQR : Enhancing the Processing and Analysis of Quantitative Proteomics Data by Incorporating Chromatography and Mass Spectrometry Information Thierry Balliau,Anne Frambourg,Olivier Langella,Marie-Laure Martin,Michel Zivyet al. Journal of Proteome Research, 2025, ⟨10.1021/acs.jproteome.4c01119⟩ Article dans une revue hal-05087344v1
Full native timsTOF PASEF-enabled quantitative proteomics with the i2MassChroQ software package Olivier Langella,Thomas Renne,Thierry Balliau,Marlène Davanture,Sven Brehmeret al. Journal of Proteome Research, In press, Online ahead of print. ⟨10.1021/acs.jproteome.3c00732⟩ Article dans une revue hal-04645948v2
(p)ppGpp modifies RNAP function to confer β-lactam resistance in a peptidoglycan-independent manner Henri Voedts,Constantin Anoyatis-Pelé,Olivier Langella,Filippo Rusconi,Jean-Emmanuel Hugonnetet al. Nature Microbiology, 2024, 9 (3), pp.647-656. ⟨10.1038/s41564-024-01609-w⟩ Article dans une revue hal-04492929v1
Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides Grégoire Prunier,Mehdi Cherkaoui,Albane Lysiak,Olivier Langella,Mélisande Blein-Nicolaset al. BMC Bioinformatics, 2023, 24 (1), pp.421. ⟨10.1186/s12859-023-05555-y⟩ Article dans une revue hal-04296170v1
Modern Metaproteomics: A Unique Tool to Characterize the Active Microbiome in Health and Diseases, and Pave the Road towards New Biomarkers—Example of Crohn’s Disease and Ulcerative Colitis Flare-Ups Céline Henry,Ariane Bassignani,Magali Berland,Olivier Langella,Harry Sokolet al. Cells, 2022, 11 (8), pp.1340. ⟨10.3390/cells11081340⟩ Article dans une revue hal-04007371v1
A combined test for feature selection on sparse metaproteomics data—an alternative to missing value imputation Sandra Plancade,Magali Berland,Mélisande Blein-Nicolas,Olivier Langella,Ariane Bassignaniet al. PeerJ, 2022, 10, pp.e13525. ⟨10.7717/peerj.13525⟩ Article dans une revue hal-04146583v1
mineXpert2 : Full-Depth Visualization and Exploration of MS n Mass Spectrometry Data Olivier Langella,Filippo Rusconi Journal of The American Society for Mass Spectrometry, In press, ⟨10.1021/jasms.0c00402⟩ Article dans une revue hal-03166825v1
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows Tim van den Bossche,Benoit Kunath,Kay Schallert,Stephanie Schäpe,Paul Abrahamet al. Nature Communications, 2021, 12 (1), pp. 7305. ⟨10.1038/s41467-021-27542-8⟩ Article dans une revue hal-04460334v1
Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets Ariane Bassignani,Sandra Plancade,Magali Berland,Melisande Blein-Nicolas,Alain Guillotet al. Journal of Proteome Research, 2021, 20 (3), pp.1522-1534. ⟨10.1021/acs.jproteome.0c00669⟩ Article dans une revue hal-03135575v1
AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée Pierre Adenot,Stéphane Bansard,David Benaben,Veronique Brunaud,Christophe Caronet al. Cahier des Techniques de l'INRA, 2018, N° Spécial: Données de la recherche, 7 p Article dans une revue hal-02097192v1
X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification Olivier Langella,Benoît Valot,Thierry Balliau,Mélisande Blein-Nicolas,Ludovic Bonhommeet al. Journal of Proteome Research, 2017, 16 (2), pp.494-503. ⟨10.1021/acs.jproteome.6b00632⟩ Article dans une revue hal-01484169v1
Large-scale phylogeographic study of the cosmopolitan aphid pest Brachycaudus helichrysi reveals host plant associated lineages that evolved in allopatry Megan Popkin,Joséphine Piffaretti,Anne Laure Clamens,Ge-Xia Qiao,Jing Chenet al. Biological Journal of the Linnean Society, 2017, 120 (1), pp.102 - 114 Article dans une revue hal-02623529v1
Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates Victor Sabarly,Claire Aubron,Jérémy Glodt,Thierry Balliau,Olivier Langellaet al. Environmental Microbiology, 2016, 18 (1), pp.100-117. ⟨10.1111/1462-2920.12855⟩ Article dans une revue istex hal-01506467v1
The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6 Thomas Dobrenel,Eder Mancera-Martinez,Céline Forzani,Marianne Azzopardi,Marlène Davantureet al. Frontiers in Plant Science, 2016, 7, ⟨10.3389/fpls.2016.01611⟩ Article dans une revue hal-01532687v1
O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry. Thibault Chaze,Alain Guillot,Benoît Valot,Olivier Langella,Julia Chamot-Rookeet al. Molecular and Cellular Proteomics, 2014, 13 (9), pp.2168-82. ⟨10.1074/mcp.M114.038075⟩ Article dans une revue hal-01204448v1
Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction Olivier Langella,Benoit B. Valot,Daniel Jacob,Thierry T. Balliau,Raphaël-Gauthier Floreset al. Proteomics, 2013, 13 (9), pp.1457-1466. ⟨10.1002/pmic.201200564⟩ Article dans une revue istex hal-02651260v1
Linking post-translational modifications and variation of phenotypic traits Warren Albertin,Philippe Marullo,Marina Bely,Michel Aigle,Aurelie Bourgaiset al. Molecular and Cellular Proteomics, 2013, 12 (3), pp.720 - 735. ⟨10.1074/mcp.M112.024349⟩ Article dans une revue hal-01003318v1
MassChroQ: A versatile tool for mass spectrometry quantification Benoit Valot,Olivier Langella,Edlira Nano,Michel Zivy Proteomics, 2011, 11 (17), pp.3572 - 3577. ⟨10.1002/pmic.201100120⟩ Article dans une revue hal-01481216v1
Comparative proteomics of leaf, stem, and root tissues of synthetic Brassica napus Warren Albertin,Olivier Langella,Johann Joets,Luc Negroni,Michel Zivyet al. Proteomics, 2009, 9 (3), pp.793-799. ⟨10.1002/pmic.200800479⟩ Article dans une revue (data paper) istex hal-01608289v1
PROTICdb: a web-based application to store, track, query, and compare plant proteome data Hélène Ferry Dumazet,Gwenn Houel,Pierre Montalent,Luc Moreau,Olivier Langellaet al. Proteomics, 2005, 5 (8), pp.2069-2081. ⟨10.1002/pmic.200401111⟩ Article dans une revue istex hal-02676901v1
PROTICdb: a web-based application to store, track, query, and compare plant proteome data Hélène Ferry-Dumazet,Gwenn Houel,Pierre Montalent,Luc Moreau,Olivier Langellaet al. Proteomics, 2005, 5, pp.2069-2081 Article dans une revue hal-00306584v1
A two-dimensional proteome map of maize endosperm Valérie Méchin,Thierry Balliau,S. Chateau-Joubert,Marlène Davanture,Olivier Langellaet al. Phytochemistry, 2004, 65 (11), pp.1609-1618. ⟨10.1016/j.phytochem.2004.04.035⟩ Article dans une revue istex hal-02675725v1

Communication dans un congrès (10)

Full DDA quantitative proteomics with the i2MassChroQ software project Olivier Langella,Filippo Rusconi Journées du PROTEOME VERT, Institut Agro Montpellier, Jun 2024, Montpelier, France Communication dans un congrès hal-04593889v1
Logiciels libres : à la recherche du bien commun Edlira Nano,Olivier Langella,Filippo Rusconi JRES (Journées réseaux de l'enseignement et de la recherche ) 2021, Renater, May 2022, Marseille, France Communication dans un congrès hal-04807360v1
Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution. Willy Vincent Bienvenut,Olivier Langella,Thierry Balliau,Filippo Rusconi,Marlène Davantureet al. ProteoVilamoura, Spanish, French and Portuguese Proteomics Societies, May 2022, VilaMoura, Portugal Communication dans un congrès hal-03815633v1
Développements pour la protéomique végétale à haut-débit Melisande Blein-Nicolas,Olivier Langella,Thomas Renne,Thierry Balliau,Marlène Davantureet al. Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France Communication dans un congrès hal-03878360v1
i2MassChroQ: a TimsTOF pro enhanced data processing solution Olivier Langella Bruker PaSER and timsTOF Proteomics data processing, Nov 2022, Paris, France Communication dans un congrès hal-03860048v1
Logiciels libres : à la recherche du bien commun Edlira Nano,Olivier Langella,Filippo Rusconi Journées Réseaux de l'Enseignement et de la Recherche JRES 2022, May 2022, Marseille, France Communication dans un congrès hal-03663215v1
SpecOMS, an open modification search approach challenging high-throughput single amino acid variations identification Luciana de Oliveira,Olivier Langella,Thierry Balliau,Dominique Tessier,Melisande Blein-Nicolaset al. 4th INPPO Conference, Mar 2021, Visioconférence, France Communication dans un congrès hal-03879763v1
SpecOMS, an open search approach challenging the identification of peptides showing sequence polymorphism Luciana de Oliveira,Olivier Langella,Thierry Balliau,Dominique Tessier,Melisande Blein-Nicolaset al. Journées du Protéome Vert, Jun 2021, Visioconférence, France Communication dans un congrès hal-03879748v1
Fermentation rate, population size, CO2 flux and quantitative proteomics: a multi-level approach applied to alcoholic fermentation in Saccharomyces cerevisiae Warren Albertin,Philippe Marullo,Michel Aigle,Aurélie Bourgais,Olivier Langellaet al. Oeno 2011. 9è Symposium International d'Oenologie de Bordeaux, Jun 2011, Bordeaux, France. 1186 p Communication dans un congrès hal-01204311v1
PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration Renaud Flores,Johann J. Joets,Olivier Langella,Benoit B. Valot,Michel M. Zivyet al. Plant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France Communication dans un congrès hal-02758409v1

Pré-publication, Document de travail (2)

Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows Tim van den Bossche,Benoit J Kunath,Kay Schallert,Stephanie Schäpe,Paul Abrahamet al. 2021 Pré-publication, Document de travail (preprint/prepublication) hal-03166804v1
A combined test for feature selection on sparse metaproteomics data - alternative to missing value imputation Sandra Plancade,Magali Berland,Mélisande Blein-Nicolas,Olivier Langella,Ariane Bassignaniet al. 2021 Pré-publication, Document de travail hal-03276724v1

Rapport (1)

DMP du projet &quot;PAPPSO Proteomics facility Mélisande Blein,Olivier Langella,Filippo Rusconi [0] INRAE. 2021 Rapport hal-03653233v2

Logiciel (1)

PROTICdb : project 193 Olivier Langella 2019 Logiciel hal-02787157v1