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Exploration of dairy cow holobiont revealed an important sharing of microbes between anatomic sites within individual hosts throughout lactation but sharing was limited in the herd
Mahendra Mariadassou
,
Laurent-Xavier Nouvel
,
Fabienne Constant
,
Diego Morgavi
,
Lucie Rault
https://www.adsa.org/Meetings/2023-Annual-Meeting. ADSA annual meeting 2023, Jun 2023, Ottawa, Canada. , 2023
Conference poster
hal-04164713v1
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Exploring the microbiota of resistant varieties in organic farming
Evelyne Aguera
,
Romain Maindron
,
Erick Casalta
,
Laurent Deliere
,
Aarti Jaswa
8th Conference on Physiology of Yeasts and Filamentous Fungi - PYFF8, Jun 2023, Cork, Ireland.
Conference poster
hal-04665549v1
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Le cidre est une matrice délicate pour l’étude des bactériophages et des phageomes.
Pierre Ledormand
,
Nathalie Desmasures
,
Céline Caillard
,
Erwan Renard
,
Didier Goux
Société Française de Microbiologie 2022, 2022, Nantes, France
Conference poster
hal-03896438v1
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Exploring the microbiota of resistant varieties in organic farming
Evelyne Aguera
,
Romain Maindron
,
Marine Touret
,
Laurent Deliere
,
Aarti Jaswa
International seminar of Montpellier Vine & Wine Sciences, Oct 2022, Montpellier, France
Conference poster
hal-04667137v1
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FROGSFUNC: Smart integration of PICRUSt2 software into FROGS pipeline
Vincent Darbot
,
Moussa Samb
,
Maria Bernard
,
Olivier Rué
,
Géraldine Pascal
JOBIM 2022, Jul 2022, Rennes, France.
Conference poster
hal-03806133v1
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Different Medicago truncatula genotypes, expressing different phenotypes, modulate microbial functional genes in the rhizosphere
Zhu, Liya
,
Olivier Rué
,
Florence Deau
,
Julie Cremaschi
,
Valentin Loux
miCROPe 2022, international Symposium microbe-assisted crop production opportunities, challenges & needs, Jul 2022, Vienne, France
Conference poster
hal-04199757v1
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Implementing a Text Mining Service Offer on the Migale Bioinformatics Platform
Mouhamadou Ba
,
Véronique Martin
,
Olivier Rué
,
Sophie Schbath
,
Valérie Vidal
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Conference poster
hal-04176740v1
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Bacteriophages infecting surface bacteria from a smear-ripened cheese are persistent and contaminate the dairy plant
Thomas Paillet
,
Julien Lossouarn
,
Clarisse Figueroa
,
Inès Pedros
,
Cédric Midoux
Viruses of Microbes (VoM) 2022, Jul 2022, Guimarães, Portugal
Conference poster
hal-04416527v1
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Plateforme bioinformatique MIGALE
Mouhamadou Ba
,
Hélène Chiapello
,
Christelle Hennequet-Antier
,
Valentin Loux
,
Mahendra Mariadassou
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Conference poster
hal-04176761v1
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New virulent bacteriophages isolated from the surface of Epoisses cheese infect ripening bacteria
Thomas Paillet
,
Julien Lossouarn
,
Inès Pedros
,
Cédric Midoux
,
Olivier Rué
Sixth symposium of the French PHAGE Network, Oct 2021, Roscoff, France
Conference poster
hal-03441698v1
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New insights into cow holobiont in relation to heath
Sergine Even
,
Mahendra Mariadassou
,
Xavier Nouvel
,
Fabienne F. Constant
,
Diego Morgavi
16e congres national de la SFM-MICROBES 2021, Sep 2021, Nantes, France
Conference poster
hal-03361039v1
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Plateforme bioinformatique MIGALE
Mouhamadou Ba
,
Hélène Chiapello
,
Christelle Hennequet-Antier
,
Valentin Loux
,
Mahendra Mariadassou
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021
Conference poster
hal-04176768v1
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Bacteriophage ecology of cider, an alcoholic fermented beverage: phages, are you there?
Pierre Ledormand
,
Nathalie Desmasures
,
Didier Goux
,
Cédric Midoux
,
Olivier Rué
LAB symposium, 2021, Egmond aan Zee, Netherlands
Conference poster
hal-03896414v1
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Plateforme bioinformatique MIGALE
Mouhamadou Ba
,
Damien Berry
,
David Christiany
,
Hélène Chiapello
,
Olivier Inizan
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020
Conference poster
hal-04176782v1
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Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ?
Benoit Goutorbe
,
Anne-Laure Abraham
,
Mahendra Mariadassou
,
Valentin Loux
,
Olivier Rué
JOBIM, Jun 2020, Montpellier, France.
Conference poster
hal-03451271v1
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A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste
Cedric Midoux
,
Franciele Camargo
,
Olivier Rué
,
Mahendra Mariadassou
,
Valentin Loux
JOBIM, Jun 2020, Montpellier, France
Conference poster
hal-02902758v1
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Testing markers to characterize microbial communities in food ecosystems using a metagenomics approach
Claire Vincent
,
Serge Casaregola
,
Monika Coton
,
Céline Delbes
,
Hugo Devillers
JOBIM, Jun 2020, Montpellier, France
Conference poster
hal-02914960v1
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Des solutions informatiques innovantes pour l’utilisation et le développement de biomarqueurs de diversité du microbiote.
Maria Bernard
,
Olivier Rué
,
Malo Le Boulch
,
Jean Mainguy
,
Laurent Cauquil
DefisPHASE 2019, 2019, Rennes, France
Conference poster
hal-03851900v1
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Feedback on a c omparative metatranscriptomic analysis
Cedric Midoux
,
Tiago P. Delforno
,
Thais Z. Macedo
,
Gileno V. Lacerda
,
Olivier Rué
JOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019
Conference poster
hal-02735859v1
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Mining anaerobic digestion data with Deep-omics, a new digital environmental engineering platform for omics data
Cédric Midoux
,
Guillaume Perréal
,
Marion Predhumeau
,
Olivier Rué
,
Yannick Fayolle
AD16 (16th IWA World Conference on Anaerobic Digestion), Jun 2019, Delft, Netherlands
Conference poster
hal-04361137v1
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Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromes
Vuong Quoc Hoang Ngo
,
Cédric Midoux
,
Olivier Rué
,
Mahendra Mariadassou
,
Violette Da Cunha
Phages in Grenoble, Oct 2019, Grenoble, France.
Conference poster
hal-04360160v1
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Plateforme bioinformatique MIGALE
Hélène Chiapello
,
Sandra Dérozier
,
Olivier Inizan
,
Mahendra Mariadassou
,
Véronique Martin
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019
Conference poster
hal-04176805v1
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Domestication of microbial community in action : a participatory research and multidisciplinary study of sourdough bread
Elisa Michel
,
Maria Belen Carbonetto
,
Charlotte Urien
,
Emilie Lhomme
,
Stephane Guezenec
II Joint Congress on Evolutionary Biology • Montpellier 2018, Aug 2018, Montpellier, France
Conference poster
hal-02954338v1
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Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data
Cedric Midoux
,
Olivier Rué
,
Olivier Chapleur
,
Mahendra Mariadassou
,
Théodore Bouchez
JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018
Conference poster
hal-02737257v1
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Evaluation of gyrB amplicon sequencing in comparison to 16S rDNA amplicon sequencing to evaluate intra-species bacterial diversity in food microbiotaImproving
Simon Poirier
,
Raphaelle Peguilhan
,
Olivier Rué
,
Valentin Loux
,
Marie-Christine Champomier-Verges
Food Micro 2018, Sep 2018, Berlin, Germany. , 2018
Conference poster
hal-02786728v1
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New -omics data analysis activity on Migale platform for MEM community
Olivier Rué
,
Valentin Loux
,
Sophie Schbath
Journées d'Animation MEM 2017, Jan 2017, Paris la Vilklette, France. 2017
Conference poster
hal-01730003v1
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