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Pascal Hingamp

22
Documents

Présentation

[Mastodon](https://genomic.social/@pascal_hingamp)
[Mastodon](https://genomic.social/@pascal_hingamp)

Publications

37884
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Macroscale patterns of oceanic zooplankton composition and size structure

Manoela Brandão , Fabio Benedetti , Séverine Martini , Yawouvi Dodji Soviadan , Jean-Olivier Irisson
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-94615-5⟩
Article dans une revue hal-03318806v1
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Diversity and evolution of bacterial bioluminescence genes in the global ocean

Thomas Vannier , Pascal Hingamp , Floriane Turrel , Lisa Tanet , Magali Lescot
NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa018⟩
Article dans une revue hal-02514159v1
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Minimum Information about an Uncultivated Virus Genome (MIUViG)

Simon Roux , Evelien M. Adriaenssens , Bas E. Dutilh , Eugene V. Koonin , Andrew M. Kropinski
Nature Biotechnology, 2019, 37 (1), pp.29-37. ⟨10.1038/nbt.4306⟩
Article dans une revue pasteur-01977322v1

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Guillem Salazar , Lucas Paoli , Adriana A. Alberti , Jaime Huerta-Cepas , Hans-Joachim Ruscheweyh
Cell, 2019, 179 (5), pp.1068-1083.e21. ⟨10.1016/j.cell.2019.10.014⟩
Article dans une revue hal-02964513v1
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Marine DNA viral macro- and microdiversity from Pole to Pole

Ann Gregory , Ahmed Zayed , Nádia Conceição-Neto , Ben Temperton , Ben Bolduc
Cell, 2019, 177 (5), pp.1109-1123.e14. ⟨10.1016/j.cell.2019.03.040⟩
Article dans une revue hal-02387010v1
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Taxon Richness of “Megaviridae” Exceeds those of Bacteria and Archaea in the Ocean

Tomoko Mihara , Hitoshi Koyano , Pascal Hingamp , Nigel Grimsley , Susumu Goto
Microbes and environments / JSME, 2018, 33 (2), pp.162-171. ⟨10.1264/jsme2.me17203⟩
Article dans une revue hal-01978927v1
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

Yoann Seeleuthner , Samuel Mondy , Vincent Lombard , Quentin Carradec , Eric Pelletier
Nature Communications, 2018, 9, pp.310. ⟨10.1038/s41467-017-02235-3⟩
Article dans une revue hal-01771839v1
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The Ocean Gene Atlas: exploring the biogeography of plankton genes online

Emilie Villar , Thomas Vannier , Caroline Vernette , Magali Lescot , Miguelangel Cuenca
Nucleic Acids Research, 2018, 46 (W1), pp.gky376. ⟨10.1093/nar/gky376⟩
Article dans une revue hal-01803597v1
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Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan

Takashi Yoshida , Yosuke Nishimura , Hiroyasu Watai , Nana Haruki , Daichi Morimoto
The International Society of Microbiologial Ecology Journal, 2018, ⟨10.1038/s41396-018-0052-x⟩
Article dans une revue hal-01771838v1
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Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters

Yanze Li , Pascal Hingamp , Hiroyasu Watai , Hisashi Endo , Takashi Yoshida
Viruses, 2018, 10 (9), pp.496. ⟨10.3390/v10090496⟩
Article dans une revue hal-01874850v1
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A global ocean atlas of eukaryotic genes

Quentin Carradec , Eric Pelletier , Corinne da Silva , Adriana A. Alberti , Yoann Seeleuthner
Nature Communications, 2018, 9 (1), pp.373. ⟨10.1038/s41467-017-02342-1⟩
Article dans une revue cea-01874711v1
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Adriana A. Alberti , Julie Poulain , Stefan Engelen , Karine Labadie , Sarah Romac
Scientific Data , 2017, 4, ⟨10.1038/sdata.2017.93⟩
Article dans une revue hal-01771844v1
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Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean

Yosuke Nishimura , Hiroyasu Watai , Takashi Honda , Tomoko Mihara , Kimiho Omae
MSphere, 2017, 2 (2), ⟨10.1128/mSphere.00359-16⟩
Article dans une revue hal-01771841v1
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Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

Francisco M. Cornejo-Castillo , Ana M. Cabello , Guillem Salazar , Patricia Sánchez-Baracaldo , Gipsi Lima-Mendez
Nature Communications, 2016, 7, pp.11071. ⟨10.1038/ncomms11071⟩
Article dans une revue hal-01295207v1
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Plankton networks driving carbon export in the oligotrophic ocean

Lionel Guidi , Samuel Chaffron , Lucie Bittner , Damien Eveillard , Abdelhalim Larhlimi
Nature, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩
Article dans une revue hal-01275276v1
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Patterns and ecological drivers of ocean viral communities

Jennifer Brum , J Cesar Ignacio-Espinoza , Simon Roux , Guilhem Doulcier , Silvia G. Acinas
Science, 2015, 348 (6237), pp.1261498. ⟨10.1126/science.1261498⟩
Article dans une revue hal-01768331v1
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Structure and function of the global ocean microbiome

Shinichi Sunagawa , Luis Pedro Coelho , Samuel Chaffron , Jens Roat Kultima , Karine Labadie
Science, 2015, 348 (6237), pp.1261359. ⟨10.1126/science.1261359⟩
Article dans une revue hal-01233742v1
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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

Magali Lescot , Pascal Hingamp , Kenji K Kojima , Emilie Villar , Sarah Romac
The International Society of Microbiologial Ecology Journal, 2015, 10 (5), pp.1134-1146. ⟨10.1038/ismej.2015.192⟩
Article dans une revue hal-01258212v1
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Open science resources for the discovery and analysis of Tara Oceans data

Stéphane Pesant , Fabrice Not , Marc Picheral , Stefanie Kandels-Lewis , Noan Le Bescot
Scientific Data , 2015, 2, pp.150023. ⟨10.1038/sdata.2015.23⟩
Article dans une revue hal-01253984v1
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Eukaryotic plankton diversity in the sunlit ocean

Noan Le Bescot , Ian Probert , Margaux Carmichael , Julie Poulain , Sarah Romac
Science, 2015, 348 (6237), pp.1261605. ⟨10.1126/science.1261605⟩
Article dans une revue hal-01253979v1

Environmental characteristics of Agulhas rings affect interocean plankton transport

Emilie Villar , Gregory Farrant , Michael Follows , Laurence Garczarek , Sabrina Speich
Science, 2015, 348 (6237), pp.1261447 - 1261447. ⟨10.1126/science.1261447⟩
Article dans une revue hal-01893637v1
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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

Ramiro Logares , Shinichi Sunagawa , Guillem Salazar , Francisco M. Cornejo-Castillo , Isabel Ferrera
Environmental Microbiology, 2014, 16 (9, SI), pp.2659-2671. ⟨10.1111/1462-2920.12250⟩
Article dans une revue hal-01258219v1