Patrick Amar

Publications

Article dans une revue (22)

Biomachines For Medical Diagnosis Francisco Santos Schneider,Amar Patrick,Asma Bahri,Julien Espeut,Mellis Alaliet al. Advanced Materials Letters, 2020, 11 (4), pp.1-5. ⟨10.5185/amlett.2020.041499⟩ Article dans une revue hal-03059916v1
Pandæsim: An Epidemic Spreading Stochastic Simulator Patrick Amar Biology, 2020, 9 (9), pp.299. ⟨10.3390/biology9090299⟩ Article dans une revue hal-02946466v1
Computer‐aided biochemical programming of synthetic microreactors as diagnostic devices Alexis Courbet,Patrick Amar,François Fages,Eric Renard,Franck Molina Molecular Systems Biology, 2018, 14 (4), pp.e7845. ⟨10.15252/msb.20177845⟩ Article dans une revue hal-01779791v1
Hypothesis: Local variations in the speed of individual DNA replication forks determine the phenotype of daughter cells Vic Norris,François Képès,Patrick Amar,Ina Koch,Laurent Janniere Medical Research Archives, 2017, 5 (12), ⟨10.18103/mra.v5i12.1598⟩ Article dans une revue hal-01672912v1
Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis David Ellison,Andrew Mugler,Matthew D. Brennan,Sung Hoon Lee,Robert J. Huebneret al. Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (6), pp.E679--E688. ⟨10.1073/pnas.1516503113⟩ Article dans une revue hal-01266690v1
Computing with Synthetic Protocells Alexis Courbet,Franck Molina,Patrick Amar Acta Biotheoretica, 2015, pp.15. ⟨10.1007/s10441-015-9258-8⟩ Article dans une revue hal-01153130v1
Sensor potency of the moonlighting enzyme-decorated cytoskeleton Vic Norris,Patrick Amar,Guillaume Legent,Camille Ripoll,Michel Thellieret al. BMC Biochemistry, 2013, 14 (3), pp.1-10. ⟨10.1186/1471-2091-14-3⟩ Article dans une revue hal-00766058v1
Novel insights regarding the sigmoidal pattern of resistance to neomycin conferred by the aphII gene, in Streptomyces lividans. Nicolas Seghezzi,Marie-Joelle Virolle,Patrick Amar AMB Express, 2013, 3 (1), pp.13. ⟨10.1186/2191-0855-3-13⟩ Article dans une revue hal-00794555v1
Chromosome Replication in Escherichia coli: Life on the Scales Vic Norris,Patrick Amar Life (Chicago, Ill. : 1978), 2012, 2 (4), pp.286-312. ⟨10.3390/life2040286⟩ Article dans une revue hal-00758130v1
The Mimic Chain Reaction Vic Norris,Alain R Thierry,Patrick Amar,Barry I Holland,Franck Molina Journal of Molecular Microbiology and Biotechnology, 2012, 22 (5), pp.335-343. ⟨10.1159/000345328⟩ Article dans une revue hal-00761608v1
The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters. Nicolas Seghezzi,Patrick Amar,Brian Koebmann,Peter R Jensen,Marie-Joëlle Virolle Applied Microbiology and Biotechnology, 2011, 90 (2), pp.615-23. ⟨10.1007/s00253-010-3018-0⟩ Article dans une revue istex hal-00643741v1
Computing with bacterial constituents, cells and populations: from bioputing to bactoputing Victor Norris,Abdallah Zemirline,Patrick Amar,Jean Nicolas Audinot,Pascal Balletet al. Theory in Biosciences, 2011 Article dans une revue hal-03469597v1
Computing with bacterial constituents, cells and populations: from bioputing to bactoputing Vic Norris,Abdallah Zemirline,Patrick Amar,Jean Nicolas Audinot,Pascal Balletet al. Theorie in den Biowissenschaften / Theory in Biosciences, 2011, 130 (3), pp.211-228. ⟨10.1007/s12064-010-0118-4⟩ Article dans une revue (article de synthèse) hal-00643738v1
Automatic characterization of emergent phenomena in complex systems Thomas Moncion,Patrick Amar,Guillaume Hutzler Journal of Biological Physics and Chemistry, 2010, 10, pp.16--23 Article dans une revue hal-00644627v1
BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks Stéphanie Rialle,Liza Felicori,Camila Dias-Lopes,Sabine Peres,Sanaâ El Atiaet al. Bioinformatics, 2010, 26 (18), pp.2298-2304. ⟨10.1093/bioinformatics/btq409⟩ Article dans une revue hal-04814810v1
A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency. Patrick Amar,Guillaume Legent,Michel Thellier,Camille Ripoll,Gilles Bernotet al. BMC Systems Biology, 2008, 2, pp.27. ⟨10.1186/1752-0509-2-27⟩ Article dans une revue hal-00643746v1
Steady-state kinetic behaviour of functioning-dependent structures Michel Thellier,Guillaume Legent,Patrick Amar,Vic Norris,Camille Ripoll FEBS Journal, 2006, 273 (18), pp.4287-4299. ⟨10.1111/j.1742-4658.2006.05425.x⟩ Article dans une revue hal-02972221v1
Modelling of complex biological systems in the context of genomics: an account of a multidisciplinary thematic seminar held in Montpellier (France) in April 2005 Alain Thierry,François Képès,Patrick Amar,Georgia Barlovatz-Meimon,Gilles Bernotet al. Journal of Biological Physics and Chemistry, 2006, 6, pp.103-107 Article dans une revue hal-00830064v1
questions for cell cyclists Victor Norris,Patrick Amar,Gilles Bernot,Anthony Delaune,Cedric Dérueet al. Journal of Biological Physics and Chemistry, 2004 Article dans une revue hal-03469523v1
HSIM: a simulation programme to study large assemblies of proteins Patrick Amar,Gilles Bernot,Victor Norris Journal of Biological Physics and Chemistry, 2004, 4, pp.124--130 Article dans une revue hal-01276581v1
Modelling and simulation of biological processes in the context of genomics Victor Norris,Patrick Amar,Gilles Bernot,Jean-Louis Giavitto,Christophe Godinet al. Journal of Biological Physics and Chemistry, 2003, 3, pp.106-110 Article dans une revue hal-00827462v1
Hyperstructures, genome analysis and I-Cells Patrick Amar,Pascal Ballet,Georgia Barlovatz-Meimon,Arndt Benecke,Gilles Bernotet al. Acta Biotheoretica, 2002, 50 (4), pp.357-373. ⟨10.1023/A:1022629004589⟩ Article dans une revue hal-00827467v1

Communication dans un congrès (13)

Bio-calculateur booléen à base de réseaux métaboliques intégré dans une vésicule artificielle: temporisation par oscillateur enzymatique Patrick Amar Séminaire de la Société Francophone de Biologie Théorique, Jun 2018, Saint Flour, France Communication dans un congrès hal-01817607v1
Extracting logic gates from a metabolic network Marc Bouffard,Franck Molina,Patrick Amar advances in Systems and Synthetic Biology, Mar 2015, Strasbourg, France. pp.13 Communication dans un congrès hal-01137905v1
Parallel biological in silico simulation Patrick Amar,Muriel Baillieul,Dominique Barth,Bertrand Lecun,Franck Quessetteet al. 29th Intenational Symposium on Computer and Information Sciences, Oct 2014, Krakow, Poland. pp.387-394, ⟨10.1007/978-3-319-09465-6_40⟩ Communication dans un congrès hal-01087811v1
Systèmes oscillants chaotiques en biologie Patrick Amar Ecole de Printemps 2014 de la Société Francophone de Biologie Théorique, Société Francophone de Biologie Théorique, May 2014, St Flour, France Communication dans un congrès hal-01087815v1
Comparative study of some methods for simulation of biochemical reactions Patrick Amar Ecole de Printemps 2012 de la Société Francophone de Biologie Théorique, Jun 2012, Saint Flour, France Communication dans un congrès hal-00763571v1
HSIM: an hybrid stochastic simulation system for systems biology Patrick Amar,Loïc Paulevé The Third International Workshop on Static Analysis and Systems Biology (SASB 2012), Sep 2012, Deauville, France. pp.3 -- 21, ⟨10.1016/j.entcs.2015.04.016⟩ Communication dans un congrès hal-00758168v1
From bioputing to bactoputing: computing with bacteria Victor Norris,Abdallah Zemirline,Patrick Amar,Pascal Ballet,Eshel Ben Jacobet al. Lille Spring School on Modelling Complex Biological Systems in the Context of Genomics, Apr 2008, Paris, France. pp.123-150 Communication dans un congrès hal-00340470v1
Hybolites: novel therapeutical tools based on stochastic automata Victor Norris,Patrick Amar,Michel Thellier,Guillaume Legent,Armelle Cabin-Flamanet al. modelling complex biological systems, 2007, Evry, France Communication dans un congrès hal-03469544v1
Detection of emergent phenomena in multi-agent systems Thomas Moncion,Guillaume Hutzler,Patrick Amar Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics, 2007, Evry, France Communication dans un congrès hal-00340469v1
Verification of Biochemical Agent-Based Models Using Petri Nets Thomas Moncion,Guillaume Hutzler,Patrick Amar International Symposium on Agent Based Modeling and Simulation (ABModSim 2006), 2006, Vianna, Austria. pp.695--700 Communication dans un congrès hal-00340492v1
Validation d'une simulation à base d'agents par l'utilisation d'un réseau de Petri Thomas Moncion,Guillaume Hutzler,Patrick Amar Systèmes multi-agents vers la conception de systèmes artificiels socio-mimétiques (JFSMA 2005), 2005, France. pp.187--190 Communication dans un congrès hal-00340462v1
Validation of an Agent Based System Using Petri Nets Thomas Moncion,Guillaume Hutzler,Patrick Amar Proceedings of the fourth international joint conference on Autonomous agents and multiagent systems, 2005, Netherlands. pp.1365--1366, ⟨10.1145/1082473.1082775⟩ Communication dans un congrès hal-00340493v1
Cellular automata, reaction-diffusion and multiagents systems for artificial cell modelling Abdallah Zemirline,Pascal Ballet,Lionel Marcé,Patrick Amar,Gilles Bernotet al. Actes du Colloque Modélisation et simulation de processus biologiques dans le contexte de la génomique, 2002, Autrans, France. pp.257-280 Communication dans un congrès hal-00827465v1

Ouvrages (11)

Proceedings of The 2012 Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics Patrick Amar,Francois Kepes,Victor Norris P. Amar, F. Kepes, V. Norris. EDP Sciences, pp.159, 2012, 978-2-7598-0753-6 Ouvrages hal-00766014v1
Proceedings of the Sophia-Antipolis Spring School on Modelling Complex Biological Systems in the context of genomics Patrick Amar,François Kepes,Victor Norris EDP Sciences, 2011, 978-2-7598-0644-7 Ouvrages hal-01138866v1
Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the context of genomics Patrick Amar,François Képès,Victor Norris EDP Sciences, 2010, 978-2-7598-0445-7 Ouvrages hal-01276496v1
Proceedings of the Nice 2009 spring school on Modelling Complex Biological Systems in the context of genomics Patrick Amar,François Képès,Victor Norris,Gilles Bernot EDP Sciences, pp.154, 2009, 978-2-7598-0437-5 Ouvrages hal-01276502v1
Proceedings of the Lille 2008 spring school on Modelling Complex Biological Systems in the context of genomics Patrick Amar,François Képès,Victor Norris,Bernard Vandenbunder EDP Sciences, pp.197, 2008, 978-2-7598-0075-9 Ouvrages hal-01276508v1
Proceedings of the Evry 2007 spring school on Modelling Complex Biological Systems in the context of genomics Patrick Amar,François Képès,Victor Norris,Gilles Bernot EDP Sciences, pp.134, 2007, 978-2-7598-0019-3 Ouvrages hal-01276522v1
Proceedings of the Bordeaux spring school on Modelling Complex Biological Systems in the context of genomics Patrick Amar,François Képès,Victor Norris,Marie M. Beurton-Aimar,Jean-Pierre Mazat EDP Sciences, pp.111, 2006, 978-2-7598-0014-8 Ouvrages hal-01276530v1
Proceedings of the Montpellier spring school on Modelling Complex Biological Systems in the context of genomics Patrick Amar,François Képès,Franck Molina,Victor Norris EDP Sciences, pp.176, 2005, 2-86883-947-9 Ouvrages hal-01276539v1
Proceedings of the EVRY spring school on Modelling and simulation of biological processes in the context of genomics Patrick Amar,Jean-Paul Comet,François Képès,Victor Norris Platypus Press, pp.210, 2004, 2-84704-0374 Ouvrages hal-01276601v1
Proceedings of the DIEPPE spring school on Modelling and simulation of biological processes in the context of genomics Patrick Amar,François Képès,Victor Norris,Philippe Tracqui Platypus Press, pp.272, 2003, 2-84704-036-6 Ouvrages hal-01276604v1
Proceedings of the AUTRANS spring school on Modelling and simulation of biological processes in the context of genomics Patrick Amar,François Képès,Victor Norris,Philippe Tracqui , pp.294, 2002 Ouvrages hal-01276617v1

HDR (1)

Contributions à l'étude de la dynamique des systèmes biologiques et aux systèmes de calcul en biologie synthétique Patrick Amar Bio-informatique [q-bio.QM]. Université Paris Sud - Paris XI, 2013 HDR tel-00929785v1