Paul-Henry Cournède

Présentation

2009 HDR Montpellier University

2001 PhD in Applied Mathematics, Ecole Centrale Paris

1997 Ingénieur Ecole Centrale Paris

1997 Certificate of Advanced Studies in Mathematics, Part III, Cambridge University

1992-1994 BJ

Publications

Article dans une revue (99)

Beyond handcrafted radiomics in oncologic imaging: Innovations in deep, explainable, multi-site and multi-omics radiomics approaches Jules Dupont,Fiona Frau,Victor Robic,Marina Manso Jimeno,Letuan Phanet al. Diagnostic and Interventional Imaging, 2026, ⟨10.1016/j.diii.2026.02.001⟩ Article dans une revue hal-05549203v1
Prognostic significance of early on-treatment evolution of circulating tumor DNA in advanced ER+/HER2- breast cancer A Mamann,Y Pradat,F C Bidard,S Delaloge,L Cabelet al. Annals of Oncology, 2025, 36 (11), pp.1342-1355. ⟨10.1016/j.annonc.2025.06.015⟩ Article dans une revue hal-05299939v1
Multimodal CustOmics: A unified and interpretable multi-task deep learning framework for multimodal integrative data analysis in oncology Hakim Benkirane,Maria Vakalopoulou,David Planchard,Julien Adam,Ken Olaussenet al. PLoS Computational Biology, 2025, 21 (6), pp.e1013012. ⟨10.1371/journal.pcbi.1013012⟩ Article dans une revue inserm-05144693v1
Contrasted reaction norms of wheat yield in pure vs mixed stands explained by tillering plasticities and shade avoidance Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre Field Crops Research, 2024, 310, pp.109368. ⟨10.1016/j.fcr.2024.109368⟩ Article dans une revue hal-04644963v1
Novae: a graph-based foundation model for spatial transcriptomics data Quentin Blampey,Hakim Benkirane,Nadège Bercovici,Fabrice André,Paul-Henry Cournède BioRxiv, 2024, ⟨10.1101/2024.09.09.612009⟩ Article dans une revue hal-05396711v1
Mathematical modelling, selection and hierarchical inference to determine the minimal dose in IFNα therapy against myeloproliferative neoplasms Gurvan Hermange,William Vainchenker,Isabelle Plo,Paul-Henry Cournède Mathematical Medicine and Biology, 2024, 41 (2), pp.110-134. ⟨10.1093/imammb/dqae006⟩ Article dans une revue hal-05269717v1
Confidence intervals of survival predictions with neural networks trained on molecular data Elvire Roblin,Paul-Henry Cournède,Stefan Michiels Informatics in Medicine Unlocked, 2024, 44 (2024), pp.101426. ⟨10.1016/j.imu.2023.101426⟩ Article dans une revue inserm-04642336v1
A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization Lily Monnier,Paul-Henry Cournède PLoS Computational Biology, 2024, 20 (2), pp.e1011880. ⟨10.1371/journal.pcbi.1011880⟩ Article dans une revue hal-05236067v1
Moving toward precision medicine to predict drug sensitivity in patients with metastatic breast cancer M. Bottosso,F. Mosele,S. Michiels,Paul-Henry P.-H. Cournède,S. Doganet al. ESMO Open, 2024, 9 (3), pp.102247. ⟨10.1016/j.esmoop.2024.102247⟩ Article dans une revue inserm-04638434v1
BR55 Ultrasound Molecular Imaging of Clear Cell Renal Cell Carcinoma Reflects Tumor Vascular Expression of VEGFR-2 in a Patient-Derived Xenograft Model Jean Courcier,Ingrid Leguerney,Baya Benatsou,Sibylle Pochon,Isabelle Tardyet al. International Journal of Molecular Sciences, 2023, 24 (22), pp.16211. ⟨10.3390/ijms242216211⟩ Article dans une revue hal-04372573v1
Improving HLA typing imputation accuracy and eplet identification with local next‐generation sequencing training data Romain Lhotte,Véronique Letort,Cédric Usureau,Debora Jorge-Cordeiro,Jérémy Siemowskiet al. HLA: Immune Response Genetics, 2023, 103 (1), pp.e15222. ⟨10.1111/tan.15222⟩ Article dans une revue hal-04573496v1
Synergic prognostic value of 3D CT scan subcutaneous fat and muscle masses for immunotherapy-treated cancer Pierre Decazes,Samy Ammari,Younes Belkouchi,Léo Mottay,Littisha Lawranceet al. Journal for Immunotherapy of Cancer, 2023, 11 (9), pp.e007315. ⟨10.1136/jitc-2023-007315⟩ Article dans une revue hal-04287256v1
A biology-driven deep generative model for cell-type annotation in cytometry Quentin Blampey,Nadège Bercovici,Charles-Antoine Dutertre,Isabelle Pic,Joana Mourato Ribeiroet al. Briefings in Bioinformatics, 2023, 24 (5), ⟨10.1093/bib/bbad260⟩ Article dans une revue hal-04287005v1
Moving toward precision oncology centers V2.0 S. Dogan,Paul-Henry P.-H. Cournède,E. Solary,J.-M. Heard,M. Aldeaet al. Annals of Oncology, 2023, 34 (12), pp.1088-1089. ⟨10.1016/j.annonc.2023.09.3115⟩ Article dans une revue hal-04372621v1
Optimizing IFN Alpha Therapy against Myeloproliferative Neoplasms Gurvan Hermange,Paul-Henry Cournède,Isabelle Plo Journal of Pharmacology and Experimental Therapeutics, 2023, 387 (1), pp.31-43. ⟨10.1124/jpet.122.001561⟩ Article dans une revue hal-04308358v1
Machine learning identifies a profile of inadequate responder to methotrexate in rheumatoid arthritis Julien Duquesne,Vincent Bouget,Paul-Henry Cournede,Bruno Fautrel,Francis Guilleminet al. Rheumatology, 2023, 62 (7), pp.2402-2409. ⟨10.1093/rheumatology/keac645⟩ Article dans une revue hal-03986625v1
Better than RECIST and Faster than iRECIST: Defining the Immunotherapy Progression Decision Score to Better Manage Progressive Tumors on Immunotherapy Younes Belkouchi,Hugues Talbot,Nathalie Lassau,Littisha Lawrance,Siham Farhaneet al. Clinical Cancer Research, 2023, 29 (8), pp.1528-1534. ⟨10.1158/1078-0432.CCR-22-0890⟩ Article dans une revue hal-04396436v1
Integrative Pan-Cancer Genomic and Transcriptomic Analyses of Refractory Metastatic Cancer Yoann Pradat,J. Viot,Andrey A. Yurchenko,Konstantin Vladimirovich Gunbin,L. Cerboneet al. Cancer Discovery, 2023, 13 (5), pp.1116-1143. ⟨10.1158/2159-8290.CD-22-0966⟩ Article dans une revue hal-04122846v1
New calibration setup for quantitative DCE‐US imaging protocol: Toward standardization Isaline Hoferer,Laurene Jourdain,Charly Girot,Baya Benatsou,Ingrid Leguerneyet al. Medical Physics : The international journal of medical physics research and practice, 2023, 50 (9), pp.5541-5552. ⟨10.1002/mp.16362⟩ Article dans une revue hal-04261753v1
CustOmics: A versatile deep-learning based strategy for multi-omics integration Hakim Benkirane,Yoann Pradat,Stefan Michiels,P. H. Cournède PLoS Computational Biology, 2023, 19 (3), ⟨10.1371/journal.pcbi.1010921⟩ Article dans une revue hal-04069315v1
Prediction of Early Response to Immunotherapy: DCE-US as a New Biomarker Raphael Naccache,Younes Belkouchi,Littisha Lawrance,Baya Benatsou,Joya Hadchitiet al. Cancers, 2022, 14 (5), pp.1337. ⟨10.3390/cancers14051337⟩ Article dans une revue hal-03792594v1
Inferring the initiation and development of myeloproliferative neoplasms Gurvan Hermange,Alicia Rakotonirainy,Mahmoud Bentriou,Amandine Tisserand,Mira El-Khouryet al. Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (37), ⟨10.1073/pnas.2120374119⟩ Article dans une revue hal-03844872v1
Modélisation mathématique de l'hématopoïèse et des hémopathies : développement, dynamique et traitement Gurvan Hermange,Paul-Henry P.-H. Cournède,Isabelle Plo Hématologie, 2022, 28 (4), pp.183-200. ⟨10.1684/hma.2022.1762⟩ Article dans une revue hal-04134893v1
Full Bayesian inference in hidden Markov models of plant growth Gautier Viaud,Yuting Chen,Paul-Henry P.-H. Cournède Annals of Applied Statistics, 2022, 16 (4), ⟨10.1214/21-AOAS1594⟩ Article dans une revue hal-04292956v1
Better than RECIST and faster than iRECIST: Defining the immunotherapy progression decision score to better manage progressive tumors on immunotherapy Younes Belkouchi,Hugues Talbot,Nathalie Lassau,L. Lawrance,S. Farhaneet al. Annals of Oncology, 2022, 33, pp.S595-S596. ⟨10.1016/j.annonc.2022.07.159⟩ Article dans une revue hal-03940635v1
Leveraging conditional generative models in a general explanation framework of classifier decisions Martin Charachon,Paul-Henry Cournède,Céline Hudelot,Roberto Ardon Future Generation Computer Systems, 2022, 132, pp.223-238. ⟨10.1016/j.future.2022.02.020⟩ Article dans une revue hal-04574152v1
Predicting immunotherapy outcomes in patients with MSI tumors using NLR and CT global tumor volume Younes Belkouchi,Laetitia Nebot-Bral,Littisha Lawrance,Michele Kind,Clémence Davidet al. Frontiers in Oncology, 2022, 12, pp.982790. ⟨10.3389/fonc.2022.982790⟩ Article dans une revue hal-04266174v1
Machine Learning Predicts Response to TNF Inhibitors in Rheumatoid Arthritis: Results on the ESPOIR and ABIRISK Cohorts Vincent Bouget,Julien Duquesne,Signe Hassler,Paul-Henry P.-H. Cournède,Bruno Fautrelet al. RMD Open : Rheumatic & Musculoskeletal Diseases, 2022, 8 (2), pp.e002442. ⟨10.1136/rmdopen-2022-002442⟩ Article dans une revue hal-03979132v1
Bayesian Estimation for the GreenLab Plant Growth Model with Deterministic Organogenesis D. Logothetis,S. Malefaki,S. Trevezas,Paul-Henry P.-H. Cournède Journal of Agricultural, Biological, and Environmental Statistics, 2021, 27 (1), pp.63-87. ⟨10.1007/s13253-021-00468-w⟩ Article dans une revue hal-04372549v1
Automaton-ABC: A statistical method to estimate the probability of spatio-temporal properties for parametric Markov population models Mahmoud Bentriou,Paolo Ballarini,Paul-Henry Cournède Theoretical Computer Science, 2021, 893, pp.191-219. ⟨10.1016/j.tcs.2021.09.039⟩ Article dans une revue hal-04148855v1
Inferring the dynamic of mutated hematopoietic stem and progenitor cells induced by IFNα in myeloproliferative neoplasms Matthieu Mosca,Gurvan Hermange,Amandine Tisserand,Robert John Noble,Christophe Marzacet al. Blood, 2021, ⟨10.1182/blood.2021010986⟩ Article dans une revue hal-03452002v1
Comprehensive landscape of immune-checkpoints uncovered in clear cell renal cell carcinoma reveals new and emerging therapeutic targets. Diana Tronik-Le Roux,Mathilde Sautreuil,Mahmoud Bentriou,Jérôme Verine,Maria Belén Palmaet al. Cancer Immunology, Immunotherapy, 2020, 69 (7), pp.1237-1252. ⟨10.1007/s00262-020-02530-x⟩ Article dans une revue hal-02879515v1
Dynamic monitoring of software use with recurrent neural networks Chloé Adam,Antoine Aliotti,Fragkiskos Malliaros,Paul-Henry Cournède Data and Knowledge Engineering, 2020, 125, pp.101781. ⟨10.1016/j.datak.2019.101781⟩ Article dans une revue hal-02520120v1
Association of metastatic pattern and molecular status in stage IV non-small cell lung cancer adenocarcinoma Alison Dormieux,Laura Mezquita,Paul-Henry P.-H. Cournède,Jordi Remon,Melodie Tazdaitet al. European Radiology, 2020, 30 (9), pp.5021-5028. ⟨10.1007/s00330-020-06784-y⟩ Article dans une revue hal-03127555v1
Optimal control of non-smooth greenhouse models A. Della Noce,M. Carrier,Paul-Henry P.-H. Cournède Acta Horticulturae, 2020, 1296, pp.125-132. ⟨10.17660/ActaHortic.2020.1296.17⟩ Article dans une revue hal-03128485v1
Prediction of the molecular status in non-small cell lung cancer based on metastatic pattern: A free webtool powered by artificial intelligence. Benjamin Besse,Alison Dormieux,Laura Mezquita,Renaud Monnet,Melodie Tazdaitet al. Journal of Clinical Oncology, 2020, 38 (15_suppl), pp.9535-9535. ⟨10.1200/JCO.2020.38.15_suppl.9535⟩ Article dans une revue hal-03128125v1
Ultrasound Molecular Imaging of Renal Cell Carcinoma: VEGFR targeted therapy monitored with VEGFR1 and FSHR targeted microbubbles Alexandre Ingels,Ingrid Leguerney,Paul-Henry P.-H. Cournède,Jacques Irani,Sophie Ferlicotet al. Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-64433-2⟩ Article dans une revue hal-03128255v1
Échographie moléculaire dans le cancer du rein : modèle pré-clinique de suivi des traitements anti-angiogéniques à partir de microbulles couplées au VEGFR1 et FSHR I. Alexandre,I. Leguerney,Paul-Henry P.-H. Cournède,J. Irani,S. Ferlicotet al. Progrès en Urologie, 2019, 29 (13), pp.647. ⟨10.1016/j.purol.2019.08.054⟩ Article dans une revue hal-03128465v1
Asymptotic distribution of likelihood ratio test statistics for variance components in nonlinear mixed effects models Charlotte Baey,Paul-Henry P.-H. Cournède,Estelle Kuhn Computational Statistics and Data Analysis, 2019, 135, pp.107-122. ⟨10.1016/j.csda.2019.01.014⟩ Article dans une revue hal-02367731v1
Insights of Global Sensitivity Analysis in Biological Models with Dependent Parameters Julien Sainte-Marie,Paul-Henry P.-H. Cournède Journal of Agricultural, Biological, and Environmental Statistics, 2019, 24 (1), pp.92-111. ⟨10.1007/s13253-018-00343-1⟩ Article dans une revue hal-02367752v1
Association of metastatic pattern and molecular status in metastatic lung non-small cell lung cancer adenocarcinomas A. Dormieux,L. Mezquita,Paul-Henry P.-H. Cournède,L. Lacroix,Emy Rouleauet al. Annals of Oncology, 2019, 30, pp.vii14. ⟨10.1093/annonc/mdz413.049⟩ Article dans une revue hal-03128413v1
A new methodology based on sensitivity analysis to simplify the recalibration of functional–structural plant models in new conditions Amélie Mathieu,Tiphaine Vidal,Alexandra Jullien,Qiongli Wu,Camille Chambonet al. Annals of Botany, 2018, 127 (3), pp.397-408. ⟨10.1093/aob/mcy080⟩ Article dans une revue hal-01824176v1
Mixed-Effects Estimation in Dynamic Models of Plant Growth for the Assessment of Inter-individual Variability Charlotte Baey,Amélie Mathieu,Alexandra Jullien,Samis Trevezas,Paul-Henry P.-H. Cournède Journal of Agricultural, Biological, and Environmental Statistics, 2018, 23 (2), pp.208-232. ⟨10.1007/s13253-017-0307-4⟩ Article dans une revue hal-01766698v1
Validation of a functional-structural tree model using terrestrial Lidar data Robert Beyer,Dominik Bayer,Veronique Letort,Hans Pretzsch,Paul-Henry Cournède Ecological Modelling, 2017, 357, pp.55 - 57. ⟨10.1016/j.ecolmodel.2017.02.018⟩ Article dans une revue hal-01630981v1
Leaf density-based modelling of phototropic crown dynamics and long-term predictive application to European beech Robert Beyer,Veronique Letort,Dominik Bayer,Hans Pretzsch,Paul-Henry Cournède Ecological Modelling, 2017, 347, pp.63 - 71. ⟨10.1016/j.ecolmodel.2016.12.012⟩ Article dans une revue hal-01630989v1
Model-Driven and Data-Driven Approaches for Crop Yield Prediction: Analysis and Comparison Xiangtuo Chen,Paul-Henry P.-H. Cournède International Journal of Mathematical and Computational Sciences, 2017, 11 (7), pp.334-342 Article dans une revue hal-02527764v1
Indices de Sobol généralisés aux variables dépendantes : tests de performance de l’algorithme HOGS couplé à plusieurs estimateurs paramétriques Julien Sainte-Marie,Gautier Viaud,Paul-Henry Cournède Journal de la Société Française de Statistique, 2017, 158 (1), pp.68-89 Article dans une revue hal-01630985v1
Leaf segmentation and tracking in arabidopsis thaliana combined to an organ-scale plant model for genotypic differentiation Gautier Viaud,Olivier Loudet,Paul-Henry Cournede Frontiers in Plant Science, 2017, 7, pp.1-14. ⟨10.3389/fpls.2016.02057⟩ Article dans une revue hal-01602596v1
Reconstructing minimal length tree branch systems from leaf positions Paul-Henry P.-H. Cournède,Robert Beyer,Dominik Bayer,Hans Pretzsch Ecological Informatics, 2017, 42, pp.61 - 66. ⟨10.1016/j.ecoinf.2017.09.010⟩ Article dans une revue hal-01630979v1
Learning from User Workflows for the Characterization and Prediction of Software Crashes Chloé Adam,Antoine Aliotti,Paul-Henry Cournède 2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW), 2016, pp.1023 - 1030. ⟨10.1109/ICDMW.2016.0148⟩ Article dans une revue hal-01616232v1
Turgidity-dependent petiole flexibility enables efficient water use by a tree subjected to water stress David Gonzalez-Rodriguez,Paul-Henry Cournède,Emmanuel de Langre Journal of Theoretical Biology, 2016, 398, pp.20-31. ⟨10.1016/j.jtbi.2016.03.011⟩ Article dans une revue istex hal-01323343v1
Bayesian parameter estimation for the Wnt pathway: an infinite mixture models approach Konstantinos Koutroumpas,Paolo Ballarini,Irene Votsi,Paul-Henry Cournède Bioinformatics, 2016, 32 (17), pp.i781 - i789. ⟨10.1093/bioinformatics/btw471⟩ Article dans une revue hal-01817488v1
A nonlinear mixed effects model of plant growth and estimation via stochastic variants of the EM algorithm. Charlotte Baey,Samis Trevezas,Paul-Henry Cournède Communications in Statistics - Theory and Methods, 2015, pp.00. ⟨10.1080/03610926.2014.930909⟩ Article dans une revue hal-01068327v1
Modeling spatial competition for light in plant populations with the porous medium equation Robert Beyer,Octave Etard,Paul-Henry P.-H. Cournède,Pascal Laurent-Gengoux Journal of Mathematical Biology, 2015, 70 (3), pp.533-547. ⟨10.1007/s00285-014-0763-1⟩ Article dans une revue hal-02404088v1
A Regularized Particle Filter EM Algorithm Based on Gaussian Randomization with an Application to Plant Growth Modeling Yuting Chen,Samis Trevezas,Paul-Henry Cournède Methodology and Computing in Applied Probability, 2015, 17 (4), pp.847-870. ⟨10.1007/s11009-015-9440-0⟩ Article dans une revue hal-00997732v1
Modeling tree crown dynamics with 3D partial differential equations Robert Beyer,Véronique Letort,Paul-Henry Cournède Frontiers in Plant Science, 2014, 5, pp.329. ⟨10.3389/fpls.2014.00329⟩ Article dans une revue hal-01272213v1
Data assimilation to reduce uncertainty of crop model prediction with convolution particle filtering Yuting Chen,Paul-Henry Cournède Ecological Modelling, 2014, in press. ⟨10.1016/j.ecolmodel.2014.01.030⟩ Article dans une revue hal-00997728v1
Application of a probabilistic model for analysing the abortion of seeds and pods in winter oilseed rape (Brassica napus) Xiu Juan Wang,Amélie Mathieu,Paul-Henry P.-H. Cournède,B G Zhang,Philippe de Reffye Annals of Applied Biology, 2014, 165 (3), pp.414- 428. ⟨10.1111/aab.12152⟩ Article dans une revue hal-01510245v1
Parameter estimation via stochastic variants of the ECM algorithm with applications to plant growth modeling Samis Trevezas,Sonia Malefaki,Paul-Henry P.-H. Cournède Computational Statistics and Data Analysis, 2014, 78, pp.82-99. ⟨10.1016/j.csda.2014.04.004⟩ Article dans une revue istex hal-02527966v1
Model-Based Analysis-Synthesis for Realistic Tree Reconstruction and Growth Simulation Corina Iovan,Paul-Henry Cournède,Thomas Guyard,Benoît Bayol,Dider Boldoet al. IEEE Transactions on Geoscience and Remote Sensing, 2014, 52 (2), pp.1438-1450. ⟨10.1109/TGRS.2013.2251467⟩ Article dans une revue hal-00826023v1
A comprehensive methodology of global sensitivity analysis for complex mechanistic models with an application to plant growth Qiongli Wu,Paul-Henry Cournède Ecological Complexity, 2014, 20, pp.219-232. ⟨10.1016/j.ecocom.2013.12.005⟩ Article dans une revue istex hal-02527976v1
Parametrization of five classical plant growth models applied to sugar beet and comparison of their predictive capacities on root yield and total biomass Charlotte Baey,Anne Didier,Sébastien Lemaire,Fabienne Maupas,Paul-Henry Cournède Ecological Modelling, 2014, 290, pp.11-20. ⟨10.1016/j.ecolmodel.2013.11.003⟩ Article dans une revue hal-00919753v1
Sunlab: a Functional-Structural Model for Genotypic and Phenotypic Characterization of the Sunflower Crop Fenni Kang,Paul-Henry Cournede,Jeremie Lecoeur,Véronique Letort Ecological Modelling, 2014, 290, pp.21-33. ⟨10.1016/j.ecolmodel.2014.02.006⟩ Article dans une revue hal-01272125v1
A Symbolic Method to Analyse Patterns in Plant Structure Cedric Loi,Paul-Henry P.-H. Cournède,Jean Françon Combinatorics, Probability and Computing, 2014, 23 (5), pp.842-860. ⟨10.1017/S0963548314000108⟩ Article dans une revue istex hal-02527843v1
Modelling the interindividual variability of organogenesis in sugar beet populations using a hierarchical segmented model Charlotte Baey,Anne Didier,Lemaire Sébastien,Fabienne Maupas,Paul-Henry Cournède Ecological Modelling, 2013, 263, pp.56-63. ⟨10.1016/j.ecolmodel.2013.04.013⟩ Article dans une revue hal-00819919v1
Development and Evaluation of Plant Growth Models: Methodology and Implementation in the PYGMALION platform Paul-Henry Cournède,Yuting Chen,Qiongli Wu,Charlotte Baey,Benoît Bayol Mathematical Modelling of Natural Phenomena, 2013, 8 (4), pp.112-130. ⟨10.1051/mmnp/20138407⟩ Article dans une revue hal-00860902v1
A sequential Monte Carlo approach for MLE in a plant growth model Samis Trevezas,Paul-Henry Cournède Journal of Agricultural, Biological, and Environmental Statistics, 2013, pp.online first. ⟨10.1007/s13253-013-0134-1⟩ Article dans une revue hal-00796154v1
An efficient computational method for global sensitivity analysis and its application to tree growth modelling Qiongli Wu,Paul-Henry Cournède,Amélie Mathieu Reliability Engineering and System Safety, 2012, 107, pp.35-43. ⟨10.1016/j.ress.2011.07.001⟩ Article dans une revue istex hal-00639539v1
An optimal control methodology for plant growth--Case study of a water supply problem of sunflower Lin Wu,François-Xavier Le Dimet,Philippe de Reffye,Bao-Gang Hu,Paul-Henry Cournèdeet al. Mathematics and Computers in Simulation, 2012, 82 (5), pp.909-923. ⟨10.1016/j.matcom.2011.12.007⟩ Article dans une revue istex hal-00705066v1
Parallel Graph Grammars with Instantiation Rules Allow Efficient Structural Factorization of Virtual Vegetation Katarina Smolenova,Winfried Kurth,Paul-Henry Cournède Electronic Communications of the EASST, 2012, pp.114-128. ⟨10.14279/tuj.eceasst.61.830.825⟩ Article dans une revue hal-00872370v1
Oscillations in Functional Structural Plant Growth Models Amélie Mathieu,Veronique Letort,Paul-Henry Cournède,Baogui Zhang,Patrick Heuretet al. Mathematical Modelling of Natural Phenomena, 2012, 7 (6), pp.47-66. ⟨10.1051/mmnp/20127603⟩ Article dans une revue hal-00780592v1
Characterization of the effects of inter-tree competition on source-sink balance in Chinese pine trees with the GreenLab model Hong Guo,Xiangdong Lei,Paul-Henry Cournède,Veronique Letort Trees - Structure and Function, 2012, 26, pp.1057-1067. ⟨10.1007/s00468-012-0683-x⟩ Article dans une revue istex hal-00780354v1
NEMA, a functional-structural model of nitrogen economy within wheat culms after flowering. II. Evaluation and sensitivity analysis Jessica Bertheloot,Qiongli Wu,Paul-Henry Cournède,Bruno Andrieu Annals of Botany, 2011, 108 (6), pp.1097-1109. ⟨10.1093/aob/mcr125⟩ Article dans une revue hal-00826101v1
Some Parameter Estimation Issues in Functional-Structural Plant Modelling Paul-Henry Cournède,Veronique Letort,Amélie Mathieu,Meng Zhen Kang,Sébastien Lemaireet al. Mathematical Modelling of Natural Phenomena, 2011, 6 (2), pp.133-159. ⟨10.1051/mmnp/20116205⟩ Article dans une revue hal-00631509v1
Simulation of fruit-set and trophic competition and optimization of yield advantages in six Capsicum cultivars using functional-structural plant modelling Yuntao Ma,A. M. Wubs,E. Heuvelink,Amélie Mathieu,J. Y. Zhuet al. Annals of Botany, 2011, 107 (5), pp.793-803. ⟨10.1093/aob/mcq223⟩ Article dans une revue halsde-00613645v1
Characterization of the interactions between architecture and source-sink relationships in winter oilseed rape (Brassica napus) using the GreenLab model Alexandra Jullien,Amélie Mathieu,Jean-Michel Allirand,Amélie Pinet,Philippe de Reffyeet al. Annals of Botany, 2011, 107 (5), pp.765-779. ⟨10.1093/aob/mcq205⟩ Article dans une revue halsde-00613649v1
NEMA, a functional-structural model of nitrogen economy within wheat culms after flowering. I.Model description Jessica Bertheloot,Paul-Henry Cournède,Bruno Andrieu Annals of Botany, 2011, 108 (6), pp.1085-1096. ⟨10.1093/aob/mcr119⟩ Article dans une revue hal-01019789v1
Variability and regulation of the number of ovules, seeds and pods according to assimilate availability in winter oilseed rape (Brassica napus L.). Xiujuan X. Wang,Amélie A. Mathieu,Paul-Henry P.-H. Cournède,Jean Michel J. M. Allirand,Alexandra A. Jullienet al. Field Crops Research, 2011, 122 (1), pp.60-69. ⟨10.1016/j.fcr.2011.02.008⟩ Article dans une revue istex hal-01000492v1
Comparison of three approaches to model grapevine organogenesis in conditions of fluctuating temperature, solar radiation and soil water content Benoît Pallas,Cedric Loi,Angélique Christophe,Paul-Henry Cournède,Jérémy Lecoeur Annals of Botany, 2010, 107 (5), pp.Non connues. ⟨10.1093/aob/mcq173⟩ Article dans une revue inria-00546250v1
Optimization of source-sink dynamics in plant growth for ideotype breeding: a case study on maize Rui Qi,Yuntao Ma,Baogang Hu,Philippe de Reffye,Paul-Henry Cournède Computers and Electronics in Agriculture, 2010, 71 (1), pp.96-105. ⟨10.1016/j.compag.2009.12.008⟩ Article dans une revue hal-00493526v3
Using a mathematical model to evaluate the trophic and non-trophic determinants of axis development in grapevine (Vitis vinifera L.) Benoit Pallas,Angélique Christophe,Paul-Henry Cournède,Jérémie Lecoeur Functional Plant Biology, 2009, 36, pp.156-170 Article dans une revue hal-00872383v1
A dynamic model of plant growth with interactions between development and functional mechanisms to study plant structural plasticity related to trophic competition. A. Mathieu,Paul-Henry Cournède,Véronique Letort,Daniel Barthélémy,P. de Reffye Annals of Botany, 2009, 103 (8), pp.1173-1186. ⟨10.1093/aob/mcp054⟩ Article dans une revue halsde-00418643v1
Using a mathematical model to evaluate the trophic and non-trophic determinants of axis development in grapevine Benoit Pallas,Angélique Christophe,Paul-Henry Cournède,Jérémie Lecoeur Functional Plant Biology, 2009, 36 (2), pp.156-170. ⟨10.1071/fp08178⟩ Article dans une revue hal-02666609v1
Une histoire de la modélisation des plantes Philippe de Reffye,Marc Jaeger,Paul-Henry Cournède Interstices, 2009 Article dans une revue hal-01350407v1
Application of the GreenLab model to simulate and optimize wood production and tree stability: a theoretical study Rui Qi,Véronique Letort,M. Z. Kang,Paul-Henry Cournède,Philippe de Reffyeet al. Silva Fennica, 2009, 43 (3), pp.465-487 Article dans une revue halsde-00436297v1
Rhythms and alternating patterns in plants as emergent properties of a model of interaction between development and functioning Amélie Mathieu,Daniel Barthélémy,Paul-Henry Cournède,Philippe de Reffye Annals of Botany, 2008, 101 (8), pp.1233-1242. ⟨10.1093/aob/mcm171⟩ Article dans une revue halsde-00288730v1
Computing competition for light in the GREENLAB model of plant growth: a contribution to the study of the effects of density on resource acquisition and architectural development. Paul-Henry Cournède,Amélie Mathieu,François Houllier,Daniel Barthélémy,Philippe de Reffye Annals of Botany, 2008, 101 (8), pp.1207-1219. ⟨10.1093/aob/mcm272⟩ Article dans une revue halsde-00291875v1
Analytical study of a stochastic plant growth model: application to the GreenLab model M. Z. Kang,Paul-Henry Cournède,Philippe de Reffye,Daniel Auclair,Bao-Gang Hu Mathematics and Computers in Simulation, 2008, 78 (1), pp.57-78. ⟨10.1016/j.matcom.2007.06.003⟩ Article dans une revue istex halsde-00306691v1
A model-based analysis of the dynamics of carbon balance at the whole-plant level in Arabidopsis thaliana Angélique Christophe,Veronique Letort,Irène Hummel,Paul-Henry Cournède,P. de Reffyeet al. Functional Plant Biology, 2008, 35, pp.1147-1162. ⟨10.1071/FP08099⟩ Article dans une revue hal-00652522v1
Quantitative genetics and functional-structural plant growth models : Simulation of quantitative trait loci detection for model parameters and application to potential yield optimization Véronique Letort,Paul Mahe,Paul-Henry Cournède,Philippe de Reffye,Brigitte Courtois Annals of Botany, 2008, 101 (8), pp.1243-1254. ⟨10.1093/aob/mcm197⟩ Article dans une revue halsde-00288538v1
Structural Identifiability of Generalized Constraint Neural Network Models for Nonlinear Regression Shuang-Hong Yang,Bao-Gang Hu,Paul-Henry Cournède Neurocomputing, 2008, 72 (1-3), pp.392-400. ⟨10.1016/j.neucom.2007.12.013⟩ Article dans une revue istex hal-00872379v1
Parameter optimization and field validation of the functional-structural model GREENLAB for Maize at different population densities Yuntao Ma,Wen Meiping,Yan Guo,Baoguo Li,Paul-Henry Cournèdeet al. Annals of Botany, 2008, 101 (8), pp.1185-1194. ⟨10.1093/aob/mcm233⟩ Article dans une revue halsde-00290415v1
Parametric identification of a functional-structural tree growth model and application to beech trees (Fagus sylvatica) Veronique Letort,Paul-Henry Cournède,Amélie Mathieu,Philippe de Reffye,Thiéry Constant Functional Plant Biology, 2008, 35, pp.951-963. ⟨10.1071/fp08065⟩ Article dans une revue inria-00529461v1
Simulation and Visualisation of Functional Landscapes: Effects of the Water Resource Competition between Plants Vincent Le Chevalier,Marc Jaeger,Xing Mei,Paul-Henry Cournède Journal of Computer Science and Technology, 2007, 22 (6), pp.835-845. ⟨10.1007/s11390-007-9105-8⟩ Article dans une revue istex inria-00547631v1
A dynamical model of plant growth with full retroaction between organogenesis and photosynthesis Amélie Rostand-Mathieu,Paul-Henry Cournède,Philippe de Reffye Revue Africaine de Recherche en Informatique et Mathématiques Appliquées, 2006, 7ème Colloque Africain sur la Recherche en Informatique (CARI'04), Volume 4, 2006, pp.101-107. ⟨10.46298/arima.1844⟩ Article dans une revue inria-00122478v2
Structural Factorization of Plants to Compute their Functional and Architectural Growth Paul-Henry Cournède,M.Z. Kang,A. Mathieu,Jean-François Barczi,H.P. Yanet al. SIMULATION: Transactions of The Society for Modeling and Simulation International, 2006, Simulation,Transactions of the society for modelling and simulation international, 82 (7), pp.427-438. ⟨10.1177/0037549706069341⟩ Article dans une revue istex inria-00121231v1
Positivity statements for a Mixed-Element-Volume scheme on fixed and moving grids Bruno Koobus,Paul-Henry Cournède,Alain Dervieux Revue Européenne de Mécanique Numérique/European Journal of Computational Mechanics, 2006, 15 (7-8), pp.767-798. ⟨10.3166/remn.15.767-798⟩ Article dans une revue hal-00372831v1
GreenLab: A Dynamical Model of Plant Growth for Environmental Applications Paul-Henry Cournède,Philippe de Reffye ERCIM News, 2005, Special : Environmental Modelling, 61, pp.39-40 Article dans une revue inria-00121232v1
A Water Supply Optimization Problem for Plant Growth Based on GreenLab Model Lin Wu,Philippe de Reffye,Bao-Gang Hu,François-Xavier Le Dimet,Paul-Henry Cournède Revue Africaine de Recherche en Informatique et Mathématiques Appliquées, 2005, Volume 3, Special Issue CARI'04, november 2005, pp.197-207. ⟨10.46298/arima.1836⟩ Article dans une revue hal-01261708v1

Communication dans un congrès (77)

Counterfactual Analysis for Digital Histopathology Slides Using Human Interpretable Features Hakim Benkirane,Maria Vakalopoulou,Stefan Michiels,Paul-Henry Cournède,William Lotter MIDL 2024 - Medical Imaging with Deep Learning, Jul 2024, Paris, France. Online ahead of print Communication dans un congrès inserm-05034913v1
Contrasted reaction norms of wheat yield in pure vs mixed stands explained by tillering plasticities and shade avoidance Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre ESA 2024, Aug 2024, Rennes, France Communication dans un congrès hal-04936930v1
Structured State Space Models for Multiple Instance Learning in Digital Pathology Leo Fillioux,Joseph Boyd,Maria Vakalopoulou,Paul-Henry P.-H. Cournède,Stergios Christodoulidis MICCAI 2023, Oct 2023, Vancouver, Canada. ⟨10.1007/978-3-031-43907-0_57⟩ Communication dans un congrès hal-04331431v1
A Formal Approach for Tuning Stochastic Oscillators Paolo Ballarini,Mahmoud Bentriou,Paul-Henry P.-H. Cournède Computational Methods in Systems Biology, Sep 2023, Luxembourg, Luxembourg. pp.1-17, ⟨10.1007/978-3-031-42697-1_1⟩ Communication dans un congrès hal-04570564v1
142P Correlating total tumor volume on CT-Scan and liquid biopsy ctDNA in 1017 patients with metastatic cancer: A novel study Y. Belkouchi,L. Dawi,L. Lawrance,S. Ammari,D. Vasseuret al. ESMO Congress 2023, European Society for Medical Oncology, Oct 2023, Madrid, Spain. pp.S237, ⟨10.1016/j.annonc.2023.09.2867⟩ Communication dans un congrès hal-04396382v1
1022MO Predicting overall survival of patients with melanoma and NSCLC treated with immunotherapy using AI combining total tumor volume and tumor heterogeneity on CT-Scans Lama Dawi,Samy Ammari,Younes Belkouchi,Joya Hadchiti,L. Lawranceet al. ESMO 2023 - Congress of European Society for Medical Oncology, European Society for Medical Oncology, Oct 2023, Madrid, Spain. pp.S622, ⟨10.1016/j.annonc.2023.09.2161⟩ Communication dans un congrès hal-04396366v1
Spatio-Temporal Analysis of Patient-Derived Organoid Videos Using Deep Learning for the Prediction of Drug Efficacy Leo Fillioux,Emilie Gontran,Jérôme Cartry,Jacques RR Mathieu,Sabrina Bedjaet al. ICCV workshop 2023, Oct 2023, Paris, France Communication dans un congrès hal-04331446v1
Developing WHEAMM, a new FSPM for the simulation of wheat cultivar mixtures. Feedbacks on model conception, sensitivity analysis and automatic calibration in Julia Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre Presentation for the Wageningen FSPM group, Apr 2023, Online, France Communication dans un congrès hal-04936906v1
Etude des mélanges de variétés de blé tendre avec une approche interdisciplinaire entre expérimentation au champ et modélisation mécaniste Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre ECOScience, Mar 2023, Palaiseau, France Communication dans un congrès hal-04936903v1
Towards the statistical inference of WHEAMM's parameters Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre Réunion du groupe de travail Modélisation du projet MoBiDiv, Feb 2022, En ligne, France Communication dans un congrès hal-04936882v1
WHEAMM: a new functional-structural plant model to study plastic responses to competition for light in wheat cultivar mixtures Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre PlantComp2022, Oct 2022, Gand, Belgium Communication dans un congrès hal-04936896v1
Hyper-AdaC: Adaptive clustering-based hypergraph representation of whole slide images for survival analysis Hakim Benkirane,Maria Vakalopoulou,Stergios Christodoulidis,Ingrid-Judith Garberis,Stefan Michielset al. ML4H 2022 - Machine Learning for Health, Nov 2022, New Orelans, France. pp.405-418 Communication dans un congrès hal-04330534v1
WHEAMM : a functional-structural model to study the quantitative genetics of wheat variety mixtures Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre Séminaire INRAE-CIRAD sur la modélisation des cultures, Dec 2021, Montpellier, France Communication dans un congrès hal-04936879v1
Normes de réaction et plasticité phénotypique des plantes selon l'hétérogénéité de leur voisinage: cas du blé en monoculture versus mélange variétal Meije Gawinowski,Paul-Henry P.-H. Cournède,Jérôme Enjalbert,Timothée Flutre Petit Pois Déridé, May 2022, Lille, France Communication dans un congrès hal-04936889v1
Comprendre les normes de réactions dans les mélanges intraspécifiques à l'aide d'un modèle et d'une expérience à l'échelle de la plante Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre Colloque interne de l'UMR GQE - Le Moulon, Jun 2021, Gif-sur-Yvette, France Communication dans un congrès hal-04936828v1
On the Use of Neural Networks with Censored Time-to-Event Data Elvire Roblin,Paul-Henry P.-H. Cournède,Stefan Michiels International Symposium on Mathematical and Computational Oncology - ISMCO 2020, Oct 2020, Paris, France. pp.56-67, ⟨10.1007/978-3-030-64511-3_6⟩ Communication dans un congrès hal-03127430v1
Developping WHEAMM, a functional-structural model of wheat variety mixtures to study the genetic basis of phenotypic plasticity in an agricultural context Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre Réunion annuelle du GDR PlasPhen, Nov 2020, Montpellier, France Communication dans un congrès hal-04936827v1
Simulation de la densité limite de champ moyen pour des populations hétérogènes avec interactions Antonin Della Della Noce,Amélie Mathieu,Paul-Henry P.-H. Cournède 22ème Rencontre du Non-Linéaire, Mar 2019, Paris, France Communication dans un congrès hal-02425831v1
Application of Weighted Regression for the Prediction of Soft Wheat Production in France Xiangtuo Chen,Benoît Bayol,Paul-Henry Cournède 6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA) 2018, Nov 2018, Hefei, China. pp.141-146, ⟨10.1109/pma.2018.8611566⟩ Communication dans un congrès hal-02860799v1
Crop recognition from sequential sentinel-1 images with lstm recurrent networks Wendy Hammache,Théophile Lohier,Paul-Henry P.-H. Cournède 6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA), Nov 2018, Hefei, China Communication dans un congrès hal-02861019v1
Assimilation de données par ﬁltrage particulaire régularisé dans un modèle d'épidémiologie Mahmoud Bentriou,Stefanella Boatto,Gautier Viaud,Paul-Henry P.-H. Cournède 50èmes journées de Statistique de a SFdS, May 2018, Palaiseau, France Communication dans un congrès hal-02860793v1
Modèles de population avec interactions : de la limite de champ moyen à l'approximation de champ moyen. Antonin Della Della Noce,Amelie Mathieu,Paul-Henry P.-H. Cournède 50èmes journées de Statistique de la SFdS, May 2018, Palaiseau, France Communication dans un congrès hal-02860994v1
Modeling the inter-individual variability of single-stemmed plant development Antonin Della Della Noce,Véronique Letort,Amandine Hansart,Charlotte Baey,Gautier Viaudet al. International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. ⟨10.1109/fspma.2016.7818287⟩ Communication dans un congrès hal-01490367v1
Sensitivity analysis to help individual plant model parameterization for winter oilseed rape Amélie Mathieu,Tiphaine Vidal,Alexandra Jullien,Qiongli Wu,Paul-Henry P.-H. Cournède International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), FSPMA 2016., Nov 2016, Qingdao, China. ⟨10.1109/fspma.2016.7818299⟩ Communication dans un congrès hal-01566311v1
Modeling soil temperature to predict emergence Etienne Claverie,Jérémie J. Lecoeur,Veronique Letort,Paul-Henry P.-H. Cournède 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Nov 2016, Qingdao, China. ⟨10.1109/FSPMA.2016.7818285⟩ Communication dans un congrès hal-01823953v1
Impact of geometrical traits on light interception in conifers analysis using an FSPM for Scots pine Katarina Streit,Michael Henke,Benoit Bayol,Paul-Henry P.-H. Cournède,Risto Sievaenenet al. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Nov 2016, Qingdao, China. ⟨10.1109/FSPMA.2016.7818307⟩ Communication dans un congrès hal-02402783v1
A data augmentation scheme embedding a sequential Monte Carlo method for Bayesian parameter inference in state space models Irene Votsi,Paul-Henry Cournède 48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France Communication dans un congrès hal-01355334v1
A Comparison of a Generic MCMC-Based Algorithm for Bayesian Estimation in C++, R and Julia. Application to Plant Growth Modeling Gautier Viaud,Yuting Chen,Benoît Bayol,Paul-Henry Cournède 2015 Spring Simulation Multi-Conference The Society for Modeling & Simulation International, Apr 2015, Alexandria, United States Communication dans un congrès hal-01250999v1
WIP - Promoting good modeling practice with a domain-specific language and statistical algorithms designed for parallel computing Benoît Bayol,Yuting Chen,Charlotte Baey,Gautier Viaud,Paul-Henry P.-H. Cournède DEVS '15: Proceedings of the Symposium on Theory of Modeling & Simulation: DEVS Integrative M&S Symposium, Apr 2015, San Diego, United States Communication dans un congrès hal-02777331v1
Towards an EDSL to enhance good modelling practice for non-linear stochastic discrete dynamical models Application to plant growth models Benoit Bayol,Yuting Chen,Paul-Henry Cournède SIMULTECH 2013, Jul 2013, Iceland. pp.132-138, ⟨10.5220/0004481101320138⟩ Communication dans un congrès hal-01001669v1
Sensitivity Analysis for Plant Models with Correlated Parameters: Application to the Characterization of Sun flower Genotypes Qiongli Wu,Benoît Bayol,Fenni Kang,Jérémie Lecoeur,Paul-Henry Cournède 7th International Conference on Sensitivity Analysis of Model Output, Jul 2013, Nice, France Communication dans un congrès hal-00826104v1
Some sequential Monte Carlo techniques for Data Assimilation in a plant growth model Yuting Chen,Samis Trevezas,Aman Gupta,Paul-Henry Cournède Applied Stochastic Models and Data Analysis International Conference (ASMDA) 2013, Jun 2013, Spain. in press Communication dans un congrès hal-00997736v1
Optimal Control of Crop Irrigation based on the Hamilton-Jacobi-Bellman Equation Jacques Ramanathan,Yuting Chen,Paul-Henry Cournède SIAM Conference on Control and its Applications, Jul 2013, San Diego, United States. pp.21-28, ⟨10.1137/1.9781611973273.4⟩ Communication dans un congrès hal-02777904v1
Modelling Competition in Crop Populations via Reaction-­Diffusion Foliage Dynamics. With an Outlook on Tree Modelling Robert Beyer,Paul-Henry Cournède 7th International Conference on Functional-Structural Plant Models (FSPM 2013), Jun 2013, Saariselkä, Finland. pp.201-203 Communication dans un congrès hal-00829756v1
A nonlinear mixed effects model to explain inter-individual variability in plant populations Charlotte Baey,Samis Trevezas,Paul-Henry Cournède Applied Stochastic Models and Data Analysis International Conference (ASMDA) 2013, Jun 2013, Barcelona, Spain Communication dans un congrès hal-00826175v1
A comprehensive global sensitivity analysis for biological model diagnosis and parameterization: application to the NEMA model Qiongli Wu,Jessica Bertheloot,Paul-Henry Cournède Seventh International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland Communication dans un congrès hal-00826102v1
Assessment of Interactions in Complex Mechanistic Models using Global Sensitivity Analysis Qiongli Wu,Paul-Henry Cournède International Conference "Interactions in Complex Systems", Jun 2013, Orléans, France Communication dans un congrès hal-00826105v1
Global sensitivity analysis of the NEMA model for its parameterization and biological diagnosis. Qiongli Wu,Jessica Bertheloot,Paul-Henry Cournède 7th International Conference on Functional-Structural Plant Models (FSPM 2013), Jun 2013, Saariselkä, Finland Communication dans un congrès hal-01456018v1
Iterative convolution particle filtering for nonlinear parameter estimation and data assimilation with application to crop yield prediction Yuting Chen,Samis Trevezas,Paul-Henry Cournède Society for Industrial and Applied Mathematics (SIAM): Control & its Applications 2013, Jul 2013, San Diego, United States. pp.CHEN, ⟨10.1137/1.9781611973273.10⟩ Communication dans un congrès hal-00826052v1
SUNLAB: a Functional-Structral Model for Genotypic and Phenotypic Characterization of the Sunflower Crop Fenni Kang,Veronique Letort,Hugo Magaldi,Paul-Henry Cournède,Jérémie Lecoeur 2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shanghai, China. pp.148-151 Communication dans un congrès hal-00781183v1
Filtrage par noyaux de convolution itératif Yuting Chen,Benoît Bayol,Cédric Loi,Samis Trevezas,Paul-Henry Cournède Les 44 Journées de Statistique, May 2012, Bruxelles, Belgique. pp.CHEN Communication dans un congrès hal-00776397v1
Evaluation of the Predictive Capacity of Five Plant Growth Models for Sugar Beet Charlotte Baey,Anne Didier,Li Song,Sébastien Lemaire,Fabienne Maupaset al. Plant Growth Modeling, Simulation, Visualization and Applications - PMA12, Nov 2012, Shanghai, China. pp.30-37 Communication dans un congrès hal-00776389v2
Assessment of Parameter Uncertainty in Plant Growth Model Identification Yuting Chen,Paul-Henry Cournède 2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, China. CHEN, page 43 Communication dans un congrès hal-00776551v1
Effects of pod position and its appearance time on pod and seed abortion in winter oilseed rape (Brassica napus L.) Xiujuan X. Wang,Amélie A. Mathieu,Paul-Henry P.-H. Cournède,Jean Michel J. M. Allirand,Alexandra A. Jullienet al. 13. International Rapeseed Congress, Jun 2011, Prague, Czech Republic. pp.154-157 Communication dans un congrès hal-01000458v1
Bayesian Estimation in Functional-Structural Plant Models with Stochastic Organogenesis Cédric Loi,Paul-Henry Cournède,Samis Trevezas 14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy Communication dans un congrès hal-00653672v1
A methodology to study Complex Biophysical Systems with Global Sensitivity Analysis Qiongli Wu,Paul-Henry Cournède ESREL2011, Antoine Grall, Sep 2011, Troyes, France Communication dans un congrès hal-00639549v1
Using a hierarchical segmented model to assess the dynamics of leaf appearance in plant populations. Charlotte Baey,Paul-Henry Cournède 14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy Communication dans un congrès inria-00602419v1
Assessment of Non-Linearity in Functional-Structural Plant Models Qiongli Wu,Jessica Bertheloot,Amélie Mathieu,Bruno Andrieu,Paul-Henry Cournède FSPM 2010 - 6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, California, United States Communication dans un congrès hal-01192293v2
Modelling of branch and flower expansion in GreenLab model to account for the whole crop cycle of Winter Oilseed Rape (Brassica Napus L.) Alexandra Jullien,Amélie Mathieu,Jean Michel Allirand,Amélie Pinet,Philippe Verchère de Reffyeet al. Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Ville service., Nov 2009, Beijing, China. 454 p Communication dans un congrès hal-01192313v1
Calibration of a probabilistic model of oilseed rape fertility to analyze the inter-variety variability in number of seeds X. Wang,Amélie Mathieu,Paul-Henry P.-H. Cournède,Jean Michel Allirand,Alexandra Jullienet al. 6. International Workshop, Sep 2010, Davis, United States Communication dans un congrès hal-01192265v1
The use of Sensitivity Analysis for the design of Functional Structural Plant Models Qiongli Wu,Paul-Henry Cournède Sixth international conference on sensitivity analysis of model output, Jul 2010, Milan, Italy. pp.7768-7769 Communication dans un congrès hal-00534046v1
Impact of topology on plant functioning : a theoretical analysis based on the GreenLab model equations Véronique Letort,Paul-Henry Cournède,Philippe de Reffye 2009 Plant Growth Modeling And Applications, Nov 2009, Beijing, China. pp.341-348 Communication dans un congrès hal-00546801v1
A functional-structural model of nitrogen economy within wheat culms after flowering Jessica Bertheloot,Paul-Henry P.-H. Cournède,Q. Wu,Bruno Andrieu 12. ESA Congress, Aug 2010, Montpellier, France Communication dans un congrès hal-01192285v1
A symbolic method to compute the probability distribution of the number of pattern occurences in random texts generated by stochastic 0L-systems Cedric Loi,Paul-Henry Cournède,Jean Françon 21st International Meeting on Probabilistic, Combinatorial, and Asymptotic Methods in the Analysis of Algorithms (AofA'10), 2010, Vienna, Austria. pp.473-488, ⟨10.46298/dmtcs.2774⟩ Communication dans un congrès inria-00529137v2
Stochastic models in floral biology and its application to the study of oilseed rape (Brassica napus L.) fertility Wang Xiujuan,Amélie Mathieu,Paul-Henry Cournède,Jean-Michel Allirand,Alexandra Jullienet al. Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China Communication dans un congrès inria-00529375v1
Stochastic models in floral biology and application to the study of oilseed rape fertility Xiujuan Wang,Amélie Mathieu,Paul-Henry P.-H. Cournède,Jean Michel Allirand,Philippe Verchère de Reffyeet al. Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Ville service., Nov 2009, Beijing, China. 454 p., ⟨10.1109/PMA.2009.12⟩ Communication dans un congrès hal-01192317v1
A Forest Growth Simulator Based on Functional-Structural Modelling of Individual Trees Paul-Henry Cournède,Thomas Guyard,Benoit Bayol,Sébastien Griffon,François de Colignyet al. Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), IEEE, Nov 2009, Beijing, China. pp.34-41, ⟨10.1109/PMA.2009.55⟩ Communication dans un congrès inria-00529096v1
Plants as Combinatorial Structures and Applications Cedric Loi,Paul-Henry Cournède,Jean Françon Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Pékin, China. pp.319-326, ⟨10.1109/pma.2009.27⟩ Communication dans un congrès inria-00546283v1
Simulation of morphological plasticity of Acacia tortilis in response to herbivore attacks Amélie Mathieu,Véronique Letort,Renaud Gosset,Jacques Gignoux,Paul-Henry Cournède Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Saisissez le nom du laboratoire, du service ou du département., Ville service., 2009, Beijing, China. 454 p Communication dans un congrès inria-00543136v1
Towards a continuous approach of functional-structural plant growth Zhongping Li,Vincent Le Chevalier,Paul-Henry Cournède Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China. pp.334-340, ⟨10.1109/PMA.2009.69⟩ Communication dans un congrès hal-00529351v1
Analysis of the density effects on the source-sink dynamics in Sugar-Beet growth Sébastien Lemaire,Fabienne Maupas,Paul-Henry Cournède,Jean-Michel Allirand,Bertrand Neyet al. Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China. 454 p Communication dans un congrès inria-00543137v1
Modeling Inter-Individual Variability in Sugar Beet Populations P. de Reffye,Sébastien Lemaire,Nitish Srivastava,Fabienne Maupas,Paul-Henry Cournède Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China Communication dans un congrès inria-00537646v1
Sensitivity analysis of GreenLab model for maize Qiongli Wu,Paul-Henry Cournède 3rd international symposium on Plant Growth and Applications (PMA09), Nov 2010, Beijing, China Communication dans un congrès inria-00532950v1
A stochastic growth model of grapevine with full interaction between environment, trophic competition and plant development. Benoit Pallas,Cedric Loi,Angélique Christophe,Paul-Henry Cournède,Jérémie Lecoeur Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Pékin, China. pp.95-102 Communication dans un congrès inria-00546291v1
Generating Functions of Stochastic L-Systems and Application to Models of Plant Development Cedric Loi,Paul Henry Cournède Fifth Colloquium on Mathematics and Computer Science, 2008, Kiel, Germany. pp.325-338, ⟨10.46298/dmtcs.3574⟩ Communication dans un congrès hal-01194661v1
Rhythms and alternating patterns in plants as emergent properties of a model of interaction between development and functioning Amélie Mathieu,Paul-Henry Cournède,Daniel Barthélémy,Philippe de Reffye Second International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, PMA06, Nov 2006, Beijin, China. ⟨10.1093/aob/mcm171⟩ Communication dans un congrès hal-02824878v1
A Functional-Structural Plant Model-Theory and Applications in Agronomy Meng Zhen Kang,Paul-Henry Cournède,Amélie Mathieu,Véronique Letort,Rui Qiet al. International Symposium on Crop Modeling and Decision Support: ISCMDS 2008, Apr 2008, Nanjing, China Communication dans un congrès inria-00380520v1
A morphogenetic crop model for sugar-beet (Beta vulgaris L.) Sébastien Lemaire,Fabienne Maupas,Paul-Henry Cournède,Philippe de Reffye ISCMDS, Apr 2008, Nanjing, China Communication dans un congrès inria-00336415v3
Analyse et modélisation de l'architecture des Plantes Daniel Auclair,Jean-François Barczi,Daniel Barthélémy,Frédéric Blaise,Yves Caraglioet al. Plantes et peuplements virtuels, Institut National de Recherche Agronomique (INRA). UAR Département Adjoint Ecologie des Forêts, Prairies et Milieux Aquatiques (0940)., Mar 2008, Lyon, France Communication dans un congrès hal-01032386v1
Is it possible to simulate rapeseed organ mass in relation to N nutrition ? Calibration of the functional-structural model GREENLAB for the oilseed rape Brassica napus L. during the vegetative phase for two nitrogen nutrition levels Alexandra Jullien,Jean Michel Allirand,Paul-Henry P.-H. Cournède,A. Matthieu,P. de Reffyeet al. 12. International Rapeseed Congress, Mar 2007, Wuhan, China Communication dans un congrès hal-01191922v1
Adaptation of the GreenLab model for analyzing sink-source relationships in Chinese Pine saplings Hong Guo,Veronique Letort,Lingxia Hong,Thierry Fourcaud,Paul-Henry Cournèdeet al. PMA06, Plant growth modeling, Simulation, Visualization and Applications, Nov 2006, Beijing, China. pp.236-243 Communication dans un congrès hal-00576583v1
Optimizing plant growth model parameters for genetic selection based on QTL mapping Veronique Letort,Paul Mahe,Paul-Henry Cournède,P. de Reffye,Brigitte Courtois Plant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. pp.16-21 Communication dans un congrès hal-00829810v1
Effect of topological and phenological changes on biomass partitioning in Arabidopsis thaliana inflorescence: a preliminary model-based study Veronique Letort,Paul-Henry Cournède,Jérémie Lecoeur,Irène Hummel,Philippe de Reffyeet al. PMA06, Plant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. pp.65-69 Communication dans un congrès hal-00576589v1
Generation of rhythms in plant development controlled by their functioning: theoretical and numerical study Amélie Mathieu,Paul-Henry Cournède,Daniel Barthélémy,Philippe de Reffye 2. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2006, Beijing, China Communication dans un congrès hal-02757964v1
Theoretical Study and Numerical Simulation of a Stochastic Model for Plant Growth M.Z. Kang,Paul-Henry Cournède,J. Le Roux,Philippe de Reffye,B.G. Hu 7th African Conference on Research in Computer Science, Nov 2004, Hammamet, Tunisia Communication dans un congrès inria-00121499v1
A Water Supply Optimization Problem for Plant Growth Based on GreenLab Model L. Wu,François-Xavier Le Dimet,B.G. Hu,Paul-Henry Cournède,Philippe de Reffye 7éme Colloque Africain sur la Recherche en Informatique (CARI'04), Nov 2004, Mammamet, Tunisia Communication dans un congrès inria-00122491v1
The Influence of Photosynthesis on the Number of Metamers per Growth Unit in GreenLab Model Amelie Mathieu,Paul-Henry Cournède,Philippe de Reffye 4TH International Workshop on Functional-Structural Plant Models, Jun 2004, Montpellier, France Communication dans un congrès hal-00124845v1

Poster de conférence (5)

Better than RECIST and faster than iRECIST: defining the Immunotherapy Progression Decision score to better manage progressive tumors on immunotherapy Younes Belkouchi,Hugues Talbot,Nathalie Lassau,Littisha Lawrance,Siham Farhaneet al. ESMO 2022, Sep 2022, Paris, France. Poster de conférence hal-03780911v1
WHEAMM: a functional-structural model to study plant growth and interactions with neighbors in wheat variety mixtures Meije Gawinowski,Jérôme Enjalbert,Paul-Henry P.-H. Cournède,Timothée Flutre FSPM 2020 : 9th International Conference on FUNCTIONAL-STRUCTURAL PLANT MODELS, Oct 2020, Hanovre (Virtual Conference), Germany Poster de conférence hal-02961398v1
Testing variance components in nonlinear mixed effects models. Application to plant growth modelling Estelle Kuhn,Charlotte Baey,Paul Henry Cournède 31-th European Meeting of Statisticians -EMS, Jul 2017, Helsinki, Finland. 2017 Poster de conférence hal-01607982v1
Testing variance components in nonlinear mixed effects models. Application to plant growth modelling Estelle Kuhn,Paul Henry Cournède,Charlotte Baey 9. International Conference of the ERCIM WG on Computational and Methodological Statistics (CMStatistics 2016), Dec 2016, Seville, Spain. 2016 Poster de conférence hal-01607339v1
Multiscale Functional-Structural Plant Modelling at the Example of Apple Trees Benoit Bayol,Gerhard G. Buck-Sorlin,Faustino Chi,Evelyne Costes,Paul Henry Cournèdeet al. International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016, ⟨10.1109/FSPMA.2016.7818281⟩ Poster de conférence hal-01602793v1

Chapitre d'ouvrage (12)

The Transition from the Single Plant to the Stand Paul-Henry Cournède,Frédéric Blaise,Philippe de Reffye,Mengzhen Kang Philippe de Reffye; Mengzhen Kang; Marc Jaeger; Baogui Zhang. Plant Model Greenlab for Botany and Agronomy, Springer Nature Singapore, pp.541-582, 2025, ⟨10.1007/978-981-97-7541-5_11⟩ Chapitre d'ouvrage hal-05107232v1
Approximate Bayesian Inference using the Mean-Field Distribution Antonin Della Noce,Paul-Henry Cournède Data Analysis and Related Applications 1: Computational, Algorithmic and Applied Economic Data Analysis, Volume 9, 1, Wiley, 2022, 9781394165513. ⟨10.1002/9781394165513.ch24⟩ Chapitre d'ouvrage hal-04374332v1
Neural Networks to Predict Survival from RNA-seq Data in Oncology Mathilde Sautreuil,Sarah Lemler,Paul-Henry P.-H. Cournède Computational Methods in Systems Biology, pp.122-140, 2021, ⟨10.1007/978-3-030-85633-5_8⟩ Chapitre d'ouvrage hal-03347253v1
Reachability Design Through Approximate Bayesian Computation Mahmoud Bentriou,Paolo Ballarini,Paul-Henry Cournède Computational Methods in Systems Biology, pp.207-223, 2019, ⟨10.1007/978-3-030-31304-3_11⟩ Chapitre d'ouvrage hal-02317539v1
Modèles Dynamiques de la Croissance des Plantes : Succès et Défis Paul-Henry P.-H. Cournède Potentiels de la science pour une agriculture durable, Académie d'Agriculture de France. Edition: Jean-Claude Pernollet., , 2018 Chapitre d'ouvrage hal-02285935v1
Le passage de la plante au peuplement Paul-Henry P.-H. Cournède,Philippe de Reffye Philippe de Reffye; Marc Jaeger; Daniel Barthélémy; François Houllier. Architecture et croissance des plantes. Modélisation et croissances des plantes, 2016, Synthèses, 978-27592-2622-1 Chapitre d'ouvrage hal-02295378v1
Méthodes inverses et identification paramétrique de modèles d'architecture végétale Philippe de Reffye,Francois Houllier,Paul-Henry P.-H. Cournède Philippe de Reffye; Marc Jaeger; Daniel Barthélémy; François Houllier. Architecture et croissance des plantes. Modélisation et applications, , 2016, Synthèses, 978-27592-2622-1 Chapitre d'ouvrage hal-02539715v1
Parameterization of plant growth models to characterize genotype by environment interactions: a methodology adapted to breeding programs Fenni Kang,Thomas Galinier,Paul-Henry Cournède,Jérémie Lecoeur Halford, N. and Semenov, M. Aspects of Applied Biology 107: Systems Approaches to Crop Improvement, The Association of Applied Biologists, pp.27-35, 2011 Chapitre d'ouvrage hal-00872388v1
Nitrogen acquisition and utilization by crops: review of different approaches and proposition of a mechanistic modeling Jessica Bertheloot,Paul-Henry Cournède,Bruno Andrieu Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications: proceedings, 9-13 November 2009, Beijing, China, IEEE Computer Society, 454 p., 2010, Plant Growth Modeling, Simulation, Visualization and Applications, 978-0-7695-3988-1 Chapitre d'ouvrage hal-01192311v1
A Functional-Structural Plant Model: Theories and its Applications in Agronomy Meng Zhen Kang,Paul-Henry Cournède,Amélie Mathieu,Veronique Letort,Rui Qi Cao, W. and White, J. and Wang, E. Crop Modeling and Decision Support, Springer, pp.148-160, 2009, 978-3-642-01131-3. ⟨10.1007/978-3-642-01132-0_16⟩ Chapitre d'ouvrage hal-00872390v1
Plant growth models Philippe de Reffye,E. Heuvalick,Daniel Barthélémy,Paul-Henry P.-H. Cournède Encyclopedia of Ecology, Elsevier, 2008, 978-0-08-045400-9. ⟨10.1016/B978-008045405-4.00217-2⟩ Chapitre d'ouvrage hal-02821385v1
Modélisation et simulation de l'architecture et de la production végétales Philippe de Reffye,Daniel Barthélémy,Paul-Henry P.-H. Cournède,Marc Jaeger Aux origines des plantes : des plantes anciennes à la botanique du XXIe siècle, Fayard, 2008, 978-2-213-62836-3 Chapitre d'ouvrage hal-02822356v1

Autre publication scientifique (1)

Simulation techniques for parameter estimation via a stochastic ECM algorithm with applications to plant growth modeling Samis Trevezas,Sonia Malefaki,Paul-Henry Cournède 2013 Autre publication scientifique hal-00798695v1

Pré-publication, Document de travail (10)

STHELAR, a multi-tissue dataset linking spatial transcriptomics and histology for cell type annotation Félicie Giraud-Sauveur,Quentin Blampey,Hakim Benkirane,Arianna Marinello,Paul-Henry Cournèdeet al. 2025 Pré-publication, Document de travail hal-05386019v1
Clonal memory of cell division in humans diverges between healthy haematopoiesis and acute myeloid leukaemia A Donada,G Hermange,T Tocci,A Midoun,G Prevedelloet al. 2025 Pré-publication, Document de travail hal-05397031v1
EVALUATION OF MACHINE-LEARNING MODELS TO MEASURE INDIVIDUALIZED TREATMENT EFFECTS FROM RANDOMIZED CLINICAL TRIAL DATA WITH TIME-TO-EVENT OUTCOMES Roblin Elvire,Paul-Henry Cournède,Stefan Michiels 2025 Pré-publication, Document de travail inserm-05290368v1
Novae: a graph-based foundation model for spatial transcriptomics data Quentin Blampey,Hakim Benkirane,Nadège Bercovici,Fabrice André,Paul-Henry Cournède 2025 Pré-publication, Document de travail hal-05392336v1
Likelihood ratio test for variance components in nonlinear mixed effects models Charlotte Baey,Paul-Henry P.-H. Cournède,Estelle Kuhn 2022 Pré-publication, Document de travail hal-03813686v1
Combining Similarity and Adversarial Learning to Generate Visual Explanation: Application to Medical Image Classification Martin Charachon,Céline Hudelot,Paul-Henry P.-H. Cournède,Camille Ruppli,Roberto Ardon 2021 Pré-publication, Document de travail hal-03127330v1
Neural networks to predict survival from RNA-seq data in oncology Mathilde Sautreuil,Sarah Lemler,Paul-Henry P.-H. Cournède 2021 Pré-publication, Document de travail hal-03224492v1
Mean field approximation of a heterogeneous population of plants in competition Antonin Della Noce,Amélie Mathieu,Paul-Henry P.-H. Cournède 2019 Pré-publication, Document de travail hal-02147039v1
Irrigation Optimization by Modeling of Plant-Soil Interaction Zhongping Li,Paul-Henry Cournède,Jean-Claude Mailhol 2011 Pré-publication, Document de travail hal-00606408v1
A symbolic method to analyse patterns in plant structure whose organogenesis is driven by a multitype branching process Cedric Loi,Paul-Henry Cournède,Jean Françon 2010 Pré-publication, Document de travail inria-00546309v1

Rapport (4)

Testing variance components in nonlinear mixed effects models. Charlotte Baey,Paul-Henry P.-H. Cournède,Estelle Kuhn [Technical Report] 2017-1, auto-saisine. 2017, pp.24 Rapport (rapport technique) hal-01603158v1
A Markovian framework to formalize stochastic L-systems and application to models of plant development Cédric Loi,Paul-Henry Cournède [Research Report] RR-6830, INRIA. 2008, pp.24 Rapport (rapport de recherche) inria-00359515v1
Computing the moments of probability distributions for branching processes Cédric Loi,Paul-Henry Cournède [Research Report] RR-6728, INRIA. 2008, pp.23 Rapport (rapport de recherche) inria-00340055v1
A Positive MUSCL Scheme for Triangulations Paul-Henry Cournède,Christophe Debiez,Alain Dervieux RR-3465, INRIA. 1998 Rapport inria-00073225v1

HDR (1)

Dynamic System of Plant Growth Paul-Henry Cournède Mathematics [math]. Université Montpellier II - Sciences et Techniques du Languedoc, 2009 HDR tel-00377462v2