Patrice Baa-Puyoulet

Identifiants chercheurs

IdHAL :

pbaapuyoulet

ORCID :

0000-0002-7033-7245

Présentation

Publications

Article dans une revue (21)

Evolutionary trajectories, early diversification and species-specific amplification of the metazoan Inhibitor of Apoptosis (IAP) repertoire Mélanie Ribeiro Lopes,Nicolas Parisot,Sergio Peignier,François Renoz,Patrice Baa-Puyouletet al. Molecular Biology and Evolution, In press, pp.msag078. ⟨10.1093/molbev/msag078/8539999⟩ Article dans une revue hal-05581229v1
ArtSymbioCyc, a metabolic network database collection dedicated to arthropod symbioses: a case study, the tripartite cooperation in Sipha maydis Patrice Baa-Puyoulet,Léo Gerlin,Nicolas Parisot,Sergio Peignier,François Renozet al. mSystems, 2025, 10 (4), ⟨10.1128/msystems.00140-25⟩ Article dans une revue hal-04987746v1
Annotation of transcription factors, chromatin-associated factors, and basal transcription machinery in the pea aphid, Acyrthosiphon pisum, and development of the ATFdb database, a resource for studies of transcriptional regulation Nicolas Parisot,Mélanie Ribeiro Lopes,Sergio Peignier,Patrice Baa-Puyoulet,Hubert Charleset al. Insect Biochemistry and Molecular Biology, 2025, 177, pp.104217. ⟨10.1016/j.ibmb.2024.104217⟩ Article dans une revue hal-04832131v1
Quantifying supply and demand in the pea aphid-Buchnera symbiosis reveals the metabolic Achilles’ heels of this interaction Léo Gerlin,Karen Gaget,Garance Lapetoule,Yohann Quivet,Patrice Baa-Puyouletet al. Metabolic Engineering, 2025, 92, pp.284 - 299. ⟨10.1016/j.ymben.2025.07.011⟩ Article dans une revue hal-05368482v1
PacBio Hi-Fi genome assembly of Sipha maydis, a model for the study of multipartite mutualism in insects François Renoz,Nicolas Parisot,Patrice Baa-Puyoulet,Léo Gerlin,Samir Fakhouret al. Scientific Data , 2024, 11 (1), pp.450. ⟨10.1038/s41597-024-03297-x⟩ Article dans une revue hal-04632873v1
Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum Natacha Koenig,Patrice Baa-Puyoulet,Amélie Lafont,Isis Lorenzo-Colina,Vincent Navratilet al. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2024, 52, pp.101323. ⟨10.1016/j.cbd.2024.101323⟩ Article dans une revue hal-04704294v1
Detection of Aphids on Hyperspectral Images Using One-Class SVM and Laplacian of Gaussians Sergio Peignier,Virginie Lacotte,Marie-Gabrielle Duport,Patrice Baa-Puyoulet,Jean-Christophe Simonet al. Remote Sensing, 2023, 15 (8), pp.2103. ⟨10.3390/rs15082103⟩ Article dans une revue hal-04122402v1
The transposable element-rich genome of the cereal pest Sitophilus oryzae Nicolas Parisot,Carlos Vargas-Chávez,Clément Goubert,Patrice Baa-Puyoulet,Séverine Balmandet al. BMC Biology, 2021, 19 (1), pp.241. ⟨10.1186/s12915-021-01158-2⟩ Article dans une revue hal-03627264v1
At the Gate of Mutualism: Identification of Genomic Traits Predisposing to Insect-Bacterial Symbiosis in Pathogenic Strains of the Aphid Symbiont Serratia symbiotica François Renoz,Vincent Foray,Jérôme Ambroise,Patrice Baa-Puyoulet,Bertrand Bearzattoet al. Frontiers in Cellular and Infection Microbiology, 2021, 11, pp.660007. ⟨10.3389/fcimb.2021.660007⟩ Article dans une revue hal-03297041v1
Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera Jan Philip Oeyen,Patrice Baa-Puyoulet,Joshua Benoit,Leo Beukeboom,Erich Bornberg-Baueret al. Genome Biology and Evolution, 2020, 12 (7), pp.1099-1118. ⟨10.1093/gbe/evaa106⟩ Article dans une revue hal-02618254v1
Draft Genome Sequences of Two Cultivable Strains of the Bacterial Symbiont Serratia symbiotica François Renoz,Jérôme Ambroise,Bertrand Bearzatto,Patrice Baa-Puyoulet,Federica Calevroet al. Microbiology Resource Announcements, 2020, 9 (10), pp.e01579-19. ⟨10.1128/MRA.01579-19⟩ Article dans une revue hal-02505875v1
Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth Jessika Consuegra,Théodore Grenier,Patrice Baa-Puyoulet,Isabelle Rahioui,Houssam Akherrazet al. PLoS Biology, 2020, 18 (3), pp.e3000681. ⟨10.1371/journal.pbio.3000681⟩ Article dans une revue hal-02919023v1
Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest Claude Rispe,Fabrice Legeai,Paul Nabity,Rosa Fernández,Arinder Aroraet al. BMC Biology, 2020, 18 (1), pp.123. ⟨10.1186/s12915-020-00864-7⟩ Article dans une revue hal-05190973v1
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest Claude Rispe,Fabrice Legeai,Paul Nabity,Rosa Fernández,Arinder Aroraet al. BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩ Article dans une revue hal-02917617v1
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome Kristen Panfilio,Iris Vargas Jentzsch,Joshua Benoit,Deniz Erezyilmaz,Yuichiro Suzukiet al. Genome Biology, 2019, 20 (1), pp.64. ⟨10.1186/s13059-019-1660-0⟩ Article dans une revue hal-02139052v1
Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum Stefano Colella,Nicolas Parisot,Pierre Simonet,Karen Gaget,Gabrielle Duportet al. Frontiers in Physiology, 2018, 9, pp.1498. ⟨10.3389/fphys.2018.01498⟩ Article dans une revue hal-01905508v1
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers,Yazhou Chen,Gemy Kaithakottil,Fabrice Legeai,Sam T. Mugfordet al. Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩ Article dans une revue hal-01500475v1
Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers,Yazhou Chen,Gemy Kaithakottil,Fabrice Legeai,Sam T. Mugfordet al. Genome Biology, 2017, 18 (1), pp.63. ⟨10.1186/s13059-017-1202-6⟩ Article dans une revue hal-01588181v1
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods Patrice Baa-Puyoulet,Nicolas Parisot,Gérard Febvay,Jaime Huerta-Cepas,Augusto F Vellozoet al. Database - The journal of Biological Databases and Curation, 2016, pp.1-9. ⟨10.1093/database/baw081⟩ Article dans une revue hal-01352558v1
Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development Andréane Rabatel,Gérard Febvay,Karen Gaget,Gabrielle Duport,Patrice Baa-Puyouletet al. BMC Genomics, 2013, 14 (1), pp.235. ⟨10.1186/1471-2164-14-235⟩ Article dans une revue hal-00824527v1
CycADS: an annotation database system to ease the development and update of BioCyc databases. Augusto F Vellozo,Amélie S Véron,Patrice Baa-Puyoulet,Jaime Huerta-Cepas,Ludovic Cottretet al. Database - The journal of Biological Databases and Curation, 2011, 2011, pp.bar008. ⟨10.1093/database/bar008⟩ Article dans une revue hal-00632965v1

Communication dans un congrès (31)

The genome of G. fossarum: a genomic toolkit to investigate endocrine and metabolic disruption in amphipod sentinel species Davide Degli Esposti,Damien Hinsinger,Joao Sousa,Patrice Baa-Puyoulet,Aurélie Bérardet al. Colloque INRAE Genomics, Jun 2025, Clermon-Ferrand, France Communication dans un congrès hal-05137926v1
The genome of G. fossarum: a genomic toolkit to investigate endocrine and metabolic disruption in amphipod sentinel species Davide Degli Esposti,Damien Hinsinger,Joao Sousa,Patrice Baa-Puyoulet,Aurélie Bérardet al. 20th International Conference on Amphipoda, Sep 2025, Lodz, Poland Communication dans un congrès hal-05419622v1
Functional analysis of interactions between bed bugs and their symbionts Wolbachia and BEV-like Raphaël Jorge,Marius Poulain,Elodie Rosinski,Hélène Henri,Adil El Filaliet al. REID (réseaux écologie des interactions durables), May 2025, Lyon, France Communication dans un congrès hal-05417648v1
Evolution towards a two-way cooperation in a single symbiotic organ: the developmental chronicle of a multi-partner insect endosymbiosis François Renoz,Karen Gaget,Hubert Charles,Nicolas Parisot,Patrice Baa-Puyouletet al. International congress of Ecology and Evolution (SFE2), Société Française d'Ecologie et d'Evolution (SFE2), Oct 2024, Lyon, France Communication dans un congrès hal-04753005v1
Functional analysis of interactions between bed bugs and their symbionts Wolbachia and BEV-like Raphaël Jorge,Marius Poulain,Elodie Rosinski,Hélène Henri,Adil El Filaliet al. International congress of Ecology and Evolution (SFE2), Oct 2024, Lyon, France Communication dans un congrès hal-04805333v1
Two-way cooperation in a single symbiotic organ: the developmental chronicle of a multi-partner insect endosymbiosis François Renoz,Karen Gaget,Hubert Charles,Mélanie Ribeiro Lopes,Nicolas Parisotet al. 3rd Joint Congress on Evolutionary Biology, Jul 2024, Montreal, Canada Communication dans un congrès hal-04753845v1
Métabolisme d'une bactérie symbiotique et besoins nutritionnels de son hôte : une question d'offre et de demande ? Léo Gerlin,Patrice Baa-Puyoulet,Karen Gaget,Garance Lapetoule,Isabelle Rahiouiet al. 2nd Workshop Modélisation du Métabolisme, Mar 2024, Toulouse, France Communication dans un congrès hal-04524685v1
A genome-wide annotation of transcription factors in the pea aphid, Acyrthosiphon pisum, and the related database, ATFdb Nicolas Parisot,Mélanie Ribeiro Lopes,Hubert Charles,Sergio Peignier,Patrice Baa-Puyouletet al. 13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France Communication dans un congrès hal-04524595v1
Deciphering growth/nutrition dynamics at the aphid – symbiont interface through metabolic modeling Léo Gerlin,Patrice Baa-Puyoulet,Karen Gaget,Isabelle Rahioui,Marie-Gabrielle Duportet al. 13e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France Communication dans un congrès hal-04524579v1
Modélisation du métabolisme et des interactions symbiotiques chez les pucerons Léo Gerlin,Patrice Baa-Puyoulet,Federica Calevro,Hubert Charles Journée scientifique enjeu « santé globale et bio‐ingénierie » de l'INSA Lyon, Apr 2023, Villeurbane, France Communication dans un congrès hal-04121080v1
The assembly of the rice weevil Sitophilus oryzae is dominated by transposable elements and shades light on the evolution of endosymbiosis in a major crop pest. Nicolas Parisot,Carlos Vargas-Chávez,Clément Goubert,Patrice Baa-Puyoulet,Severine Balmandet al. Arthropod Genomics Symposium 2022, Jun 2022, Notre Dame, United States Communication dans un congrès hal-04783673v1
Intégration de données multi-omiques pour l’identification d’enzymes clés du métabolisme lipidique chez l’espèce sentinelle Gammarus fossarum Natacha Koenig,Patrice Baa-Puyoulet,Maxime Leprêtre,Jean-Charles Gaillard,J. Armengaudet al. GDR Ecotoxicologie, Nov 2021, Rennes, France Communication dans un congrès hal-03810311v1
Analysis of the inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications Mélanie Ribeiro Lopes,Jousselin Emmanuelle,Patrice Baa-Puyoulet,C. Huygens,Karen Gagetet al. Incontri di diversità delle forme e degli animali, Università di Pisa, 2021, Pisa, Italy Communication dans un congrès hal-03514196v1
The challenge of annotating and reconstructing metabolic networks for the comprehension of the physiology of aphids and other insects Hubert Charles,Patrice Baa-Puyoulet 2nd annual meeting of Japan-France Plant-Insect-Symbiont Interaction network (PISI-net), Nov 2019, Le Rheu, France Communication dans un congrès hal-03513078v1
Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum Nicolas Parisot,Stefano Colella,Mélanie Ribeiro Lopes,Karen Gaget,Marie-Gabrielle Duportet al. INSA Lyon International Partner Days, Oct 2018, Villeurbanne, France Communication dans un congrès hal-03514034v1
Atelier Bases de données génomiques et métaboliques : présentation des bases BioCyc développées dans l’UMR BF2I Hubert Charles,Patrice Baa-Puyoulet 11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA),, Nov 2018, Rennes, France Communication dans un congrès hal-03510598v1
Rôle clé du bactériocyte dans la résilience du puceron aux stress nutritionnels Federica Calevro,Nicolas Parisot,Mélanie Ribeiro Lopes,Stefano Colella,Karen Gagetet al. 11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France Communication dans un congrès hal-03514026v1
AphidCyc, une collection de bases de données métaboliques dédiée à l'étude et la comparaison du métabolisme chez les pucerons Patrice Baa-Puyoulet,Hubert Charles,Federica Calevro 11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France Communication dans un congrès hal-03510642v1
Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum Nicolas Parisot,Mélanie Ribeiro Lopes,Karen Gaget,Marie-Gabrielle Duport,Patrice Baa-Puyouletet al. France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France Communication dans un congrès hal-03514051v1
Effecteurs et inhibiteurs de l’apoptose chez le puceron du pois : annotation et implication dans la mort cellulaire bactériocytaire Mélanie Ribeiro Lopes,Pierre Simonet,Karen Gaget,Marie-Gabrielle Duport,Severine Balmandet al. 10. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2017, Colmar, France Communication dans un congrès hal-03506807v1
Life history traits and tissue-specific gene expression changes underlying the symbiotic pea aphid resilience to a tyrosine and phenylalanine depleted diet Nicolas Parisot,Pierre Simonet,Karen Gaget,Marie-Gabrielle Duport,Patrice Baa-Puyouletet al. 9. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2016, Amiens, France Communication dans un congrès hal-03506796v1
Systems biology of symbiosis: from partners’ genomics to physiology of interactions Hubert Charles,Federica Calevro,Gérard Febvay,Patrice Baa-Puyoulet,Marie-Gabrielle Duportet al. First Meeting of the PRC Israel-France, Sep 2016, Villeurbanne, France Communication dans un congrès hal-03506791v1
From SymbAphidBase to SymbAphidCyc: two companion databases to study and compare aphid symbionts from genomes to metabolic pathways Patrice Baa-Puyoulet,Mathieu Labernardiere,Nicolas Parisot,Jean-Pierre Gauthier,Gérard Febvayet al. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Université d'Auvergne - Clermont-Ferrand I (UdA). FRA., Jul 2015, Clermont-Ferrand, France. 1 p Communication dans un congrès hal-01208786v1
SymbAphidBase : une base de données nouvelle dédiée aux symbiotes de pucerons pour stocker et visualiser les génomes séquencés en standardisant leurs annotations Mathieu Labernardiere,Patrice Baa-Puyoulet,Jean-Pierre Gauthier,Gérard Febvay,Federica Calevroet al. 7. Rencontres du réseau Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). Le Rheu, FRA., Nov 2014, Avignon, France. 1 p Communication dans un congrès hal-01208785v1
Symbiose puceron – Buchnera : approche métabolomique chez Acyrthosiphon pisum Marjolaine Rey,Floriant Bellvert,Marie-Gabrielle Duport,Patrice Baa-Puyoulet,Federica Calevroet al. 6èmes journées du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés, Oct 2013, Montpellier, France Communication dans un congrès hal-03506758v1
Analyse métabolomique de la symbiose entre le puceron Acyrthosiphon pisum et la bactérie Buchnera aphidicola Marjolaine Rey,Floriant Bellvert,Marie-Gabrielle Duport,Patrice Baa-Puyoulet,Federica Calevroet al. 7èmes Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France Communication dans un congrès hal-03506751v1
The CycADS annotation database system to support the development and update of enriched BioCyc databases. Development of ad hoc BioCyc DB : AcypiCyc, ArthopodaCyc Patrice Baa-Puyoulet,Augusto F. Vellozo,Jaime Huerta-Cepas,Gérard Febvay,Toni Gabaldonet al. 13. Journées Ouvertes en Biologie, Informatique et Mathématiques, Institut National de Recherche en Informatique et en Automatique (INRIA). Rennes, FRA., Jul 2012, Rennes, France. Pagination multiple Communication dans un congrès hal-02747415v1
Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development Andréane Rabatel,Gérard Febvay,Karen Gaget,Gabrielle Duport,Nadia Bendridiet al. Sixth International Symposium on Molecular Insect Science, 2011, Amsterdam, Netherlands Communication dans un congrès hal-00748785v1
Exploration génomique et fonctionnelle des insectes et de leurs partenaires symbiotiques Hubert Charles,Stefano Colella,Federica Calevro,Gérard Febvay,Yvan Rahbéet al. Journée Sciences Croisées "Modélisation et Sciences Numériques : nouveaux instruments et opportunités", Institut National des Sciences Appliquées de Lyon (INSA Lyon). Conseil Scientifique de l'INSA, Villeurbanne, FRA., Oct 2010, Villeurbanne, France. n. p Communication dans un congrès hal-02804281v1
ArthropodaCyc: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods Patrice Baa-Puyoulet,Augusto F Vellozo,Jaime Huerta-Cepas,Gérard Febvay,T. Gabaldonet al. 5th Annual Arthropod Genomics Symposium "Arthropod Genomics 2011: Exploring Diversity, Relating Similarity", Jun 2011, Kansas City, United States Communication dans un congrès hal-00748601v1
CycADS: an annotation management system for the development and update of BioCyc metabolic network databases A. Vellozo,Patrice Baa-Puyoulet,A. Veron,Jaime Huerta-Cepas,Ludovic Cottretet al. 1st International Workshop on Information Systems for Insect Pests, Rennes, FRANCE, 2009, France Communication dans un congrès hal-00496032v1

Poster de conférence (32)

Origin and evolution of Inhibitors of apoptosis (IAPs) in early metazoans Mélanie Ribeiro Lopes,Nicolas Parisot,Sergio Peignier,François Renoz,Patrice Baa-Puyouletet al. EVOLYON 2025, Nov 2025, Villeurbanne, France Poster de conférence hal-05290683v1
Unraveling the impact of microbiota xenobiotic interactions on the mosquito metabolome through clustering-based analyses Pierre Antonelli,Guillaume Meiffren,Patrice Baa-Puyoulet,Laurent Vallon,Edwige Martinet al. 17èmes Journées Scientifiques du RFMF, Jun 2025, Paris, France Poster de conférence hal-05137853v1
Origin and evolution of Inhibitors of apoptosis (IAP) in early metazoans Mélanie Ribeiro Lopes,Nicolas Parisot,Sergio Peignier,François Renoz,Patrice Baa-Puyouletet al. Jacque Monod conference, Molecular basis for membrane remodelling and organisation, Jun 2025, Roscoff, France Poster de conférence hal-05137897v1
Mathematical modeling of pea aphid metabolism Ariane Paradan,Patrice Baa-Puyoulet,Federica Calevro,Hubert Charles,Léo Gerlin 14èmes rencontres du réseau de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2024, Montpellier, France Poster de conférence hal-04788746v1
Genome assembly of the cereal aphid Sipha maydis, a model for the study of dual endosymbiosis in insects François Renoz,Nicolas Parisot,Patrice Baa-Puyoulet,Léo Gerlin,Samir Fakhouret al. 13e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France Poster de conférence hal-04524568v1
Dynamics of endosymbionts in bed bugs during development Raphaël Jorge,Marius Poulain,Elodie Rosinski,Hélène Henri,Adil El Filaliet al. Groupe Régional de Recherche en Microbiologie des Interactions (G-RREMI), Nov 2023, Lyon, France Poster de conférence hal-04805370v1
Functional analysis of interactions between bed bugs and their nutritional symbiont Wolbachia Raphaël Jorge,Marius Poulain,Elodie Rosinski,Hélène Henri,Adil El Filaliet al. Rencontres du Réseau Ecologie des Interactions Durables 2023, May 2023, Poitiers, France Poster de conférence hal-04805475v1
Functional analysis of interactions between bed bugs and their nutritional symbiont Wolbachia Raphaël Jorge,Marius Poulain,Elodie Rosinski,Hélène Henri,Adil El Filaliet al. Journée scientifique enjeu « santé globale et bio‐ingénierie » de l'INSA Lyon, Apr 2023, Lyon, France Poster de conférence hal-04805501v1
High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae and Sodalis pierantonius endosymbiotic association Nicolas Parisot,Mariana Galvão Ferrarini,Clément Goubert,Carlos Vargas-Chávez,Agnès Vallieret al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-03810657v1
From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts. Patrice Baa-Puyoulet,Nicolas Parisot,Sergio Peignier,Federica Calevro,Hubert Charles 12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France Poster de conférence hal-03810352v1
From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts Patrice Baa-Puyoulet,Nicolas Parisot,Sergio Peignier,Federica Calevro,Hubert Charles 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-04784498v1
From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts Patrice Baa-Puyoulet,Nicolas Parisot,Sergio Peignier,Federica Calevro,Hubert Charles 13. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2020, Nice (virtuel), France Poster de conférence hal-03514174v1
4IN: an interactive database for insect innate immunity Carole Vincent-Monégat,Nicolas Parisot,Carlos Vargas-Chávez,Louis Beranger,Aymeric Bonnamouret al. Colloque Réseau Ecologie des Interactions Durables (REID) et le réseau Immunologie des Invertébrés (IMMUNINV), May 2019, Montpellier, France Poster de conférence hal-04784931v1
4IN: an interactive database for insect innate immunity Carole Vincent-Monégat,Nicolas Parisot,Carlos Vargas-Chávez,Louis Beranger,Aymeric Bonnamouret al. Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France Poster de conférence hal-04784972v1
Development of a dual RNA-seq strategy to unravel the molecular bases of host-symbiont interactions Nicolas Parisot,Agnès Vallier,Justin Maire,Mariana G. Ferrarini,Benjamin Gilletet al. Journée scientifique de la FR BioEnviS, Jan 2019, Villeurbanne, France Poster de conférence hal-04804142v1
Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis Nicolas Parisot,Stefano Colella,Pierre Simonet,Karen Gaget,Marie-Gabrielle Duportet al. 2nd UK-France Joint meeting on Aphids - Royal Entomological Society, Apr 2019, Rothamsted, United Kingdom Poster de conférence hal-03513048v1
Development of a dual RNA-seq strategy to unravel the molecular bases of host-symbiont interactions Nicolas Parisot,Agnès Vallier,Justin Maire,Mariana G. Ferrarini,Benjamin Gilletet al. Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France Poster de conférence hal-04785000v1
Molecular characterization of aphid bacteriocyte cell death by RNAseq analysis Nicolas Parisot,Stefano Colella,Mélanie Ribeiro Lopes,Karen Gaget,Marie-Gabrielle Duportet al. INSA Lyon International Partner Days, Oct 2018, Lyon, France Poster de conférence hal-03741347v1
Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis Carlos Vargas-Chavez,Nicolas Parisot,C. Goubert,Patrice Baa-Puyoulet,Severine Balmandet al. 6. Meeting of the Spanish Society for Evolutionary Biology (SESBE), Jan 2018, Palma of Mallorca, Balearic Islands, Spain Poster de conférence hal-03514015v1
Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis Nicolas Parisot,Stefano Colella,Pierre Simonet,Karen Gaget,Marie-Gabrielle Duportet al. XIth European Congress of Entomology, Jul 2018, Naples, Italy Poster de conférence hal-03509885v1
The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis Carlos Vargas-Chavez,Nicolas Parisot,Clément Goubert,Patrice Baa-Puyoulet,Severine Balmandet al. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2016, Lyon, France Poster de conférence hal-03506786v1
SymbAphidBase: a new database dedicated to aphid symbionts to store novel sequenced genomes and standardize their annotations Mathieu Labernardiere,Patrice Baa-Puyoulet,Jean-Pierre Gauthier,Gérard Febvay,Federica Calevroet al. 13. European Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , 1 p., 2014 Poster de conférence hal-02798649v1
Annotating arthropods genome to study and compare their metabolism: the ArthropodaCyc collection of Cyc databases powered by CycADS Patrice Baa-Puyoulet,Augusto Vellozo,Jaime Huerta-Cepas,Gérard Febvay,Federica Calevroet al. 13. European Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , 1 p., 2014 Poster de conférence hal-02798101v1
The CycADS annotation database system to support the development and update of enriched BioCyc databases: development of ad hoc BioCyc DB (AcypiCyc, ArthropodaCyc Patrice Baa-Puyoulet,Augusto Vellozo,Jaime Huerta-Cepas,Gérard Febvay,Federica Calevroet al. 8. Meeting of the International Aphid Genomics Consortium, Jan 2013, Harpenden, United Kingdom Poster de conférence hal-03506707v1
« ArthropodaCyc » : une collection de bases de données enrichies à l’aide de CycADS pour étudier et comparer le métabolisme des arthropodes. Patrice Baa-Puyoulet,Stefano Colella,Augusto Vellozo,Jaime Huerta-Cepas,Gérard Febvayet al. 17. Colloque de Biologie de l’Insecte - CBI-2013, Oct 2013, Montpellier, France Poster de conférence hal-03506713v1
The CycADS annotation database system to support the development and update of enriched BioCyc databases. Development of ad hoc BioCyc DB : AcypiCyc, ArthopodaCyc Patrice Baa-Puyoulet,Augusto Vellozo,Jaime Huerta-Cepas,Gérard Febvay,Toni Gabaldonet al. 5. Réunion Réseau BAPOA, Nov 2012, Villeurbanne, France. 2012 Poster de conférence hal-02806092v1
Using the “CycADS” annotation management system to develop a BioCyc metabolic network database for sequenced arthropods genomes: first steps towards “ArthropodsCyc” Patrice Baa-Puyoulet,Augusto Vellozo,Jaime Huerta-Cepas,Gérard Febvay,Toni Gabaldonet al. Rencontres bioinformaticiens et statisticiens de l’INRA, Mar 2011, Versailles, France. 1 p., 2011 Poster de conférence hal-02806205v1
Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development Andréane Rabatel,Gérard Febvay,Karen Gaget,Marie-Gabrielle Duport,Nadia Bendridiet al. 4. Réunion Réseau BAPOA, Nov 2011, Paris, France. 1 p., 2011 Poster de conférence hal-02805925v1
“ArthropodaCyc”: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods Patrice Baa-Puyoulet,Augusto Vellozo,Jaime Huerta-Cepas,Gérard Febvay,Toni Gabaldonet al. 5. Annual Arthropod Genomics Symposium “Arthropod Genomics 2011: Exploring Diversity, Relating Similarity”, Jun 2011, Kansas City, United States. , 33 p., 2011, Fifth Annual Arthropod Genomics Symposium Poster de conférence hal-02749029v1
Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development Andréane Rabatel,Gérard Febvay,Karen Gaget,Marie-Gabrielle Duport,Nadia Bendridiet al. 6. International Symposium on Molecular Insect Science, Oct 2011, Amsterdam, Netherlands. Elsevier, 2011, Poster de conférence hal-02747829v1
A tale of genome, annotations, metabolism and phylogenomics: the pea aphid genome resources Fabrice Legeai,Stefano Colella,Jaime Huerta-Cepas,Jean-Pierre Gauthier,Augusto Vellozoet al. 10. Cold Spring Harbor Laboratory / Wellcome Trust conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom. 1 p., 2010 Poster de conférence hal-01231276v1
Using the “CycADS” annotation management system to develop a BioCyc metabolic network database for sequenced arthropods genomes: first steps towards “ArthropodsCyc” Augusto Vellozo,Patrice Baa-Puyoulet,Jaime Huerta-Cepas,Gérard Febvay,Federica Calevroet al. 4. Annual Arthropod Genomics Symposium on “Arthropod Genomics: New Approaches and Outcomes”, Jun 2010, Kansas City, United States. 45 p., 2010, Fourth Annual Arthropod Genomics Symposium Poster de conférence hal-02753908v1