Philippe Bordron

Publications

Pré-publication, Document de travail (2)

Planetary-scale heterotrophic microbial community modeling assesses metabolic synergy and viral impacts A. Régimbeau,F. Tian,G. Smith,V Riddell,C. Andreaniet al. 2025 Pré-publication, Document de travail hal-05044064v1
HUMESS: Integrating Quantitative Transcriptomic Analysis and Metabolic Modeling to Unveil Condition-Specific Gene Signatures Louis Paré,Philippe Bordron,Laurent David,Maxime Mahé,Audrey Bihouéeet al. 2025 Pré-publication, Document de travail hal-05044080v1

Poster de conférence (2)

SnoBoard: surfing on ncRNA modifications and snoRNA guides Philippe Bordron,Julien Touchais,Christine Gaspin JOBIM2025, Jul 2025, Bordeaux, France Poster de conférence hal-05164763v1
The Genotoul-Bioinfo platform Florent Blaise,Philippe Bordron,Patrice Dehais,Vincent Dominguez,Christine Gaspinet al. JOBIM2025, Jul 2025, Bordeaux, France Poster de conférence hal-05163782v1

Article dans une revue (8)

HUMESS: integrating quantitative transcriptomic analysis and metabolic modeling to unveil condition-specific gene signatures Louis Paré,Philippe Bordron,Laurent David,Maxime Mahé,Audrey Bihouéeet al. Bioinformatics, 2025, 41 (8), pp.btaf448. ⟨10.1093/bioinformatics/btaf448⟩ Article dans une revue hal-05232371v1
Maternal prebiotic supplementation impacts colitis development in offspring mice Amélie Lê,Amandine Selle,Philippe Aubert,Tony Durand,Carole Brosseauet al. Frontiers in Nutrition, 2023, 9, pp.988529. ⟨10.3389/fnut.2022.988529⟩ Article dans une revue hal-03930453v1
Could the Microbiota Be a Predictive Factor for the Clinical : Response to Probiotic Supplementation in IBS-D? A Cohort Study Justine Marchix,Lucille Quénéhervé,Philippe Bordron,Philippe Aubert,Tony Durandet al. Microorganisms, 2023, 11 (2), pp.277. ⟨10.3390/microorganisms11020277⟩ Article dans une revue hal-04163623v1
Fecal Supernatant from Adult with Autism Spectrum Disorder Alters Digestive Functions, Intestinal Epithelial Barrier, and Enteric Nervous System Jacques Gonzales,Justine Marchix,Laetitia Aymeric,Catherine Le Berre-Scoul,Johanna Zoppiet al. Microorganisms, 2021, 9 (8), pp.1723. ⟨10.3390/microorganisms9081723⟩ Article dans une revue hal-03637249v1
Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus Delphine Nègre,Méziane Aite,Arnaud Belcour,Clémence Frioux,Loraine Brillet-Guéguenet al. Antioxidants , 2019, 8 (11), pp.564. ⟨10.3390/antiox8110564⟩ Article dans une revue hal-02395080v1
Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses François Thomas,Philippe Bordron,Damien Eveillard,Gurvan Michel Frontiers in Microbiology, 2017, 8, pp.article 1808. ⟨10.3389/fmicb.2017.01808⟩ Article dans une revue hal-01613034v1
Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach Philippe Bordron,Mauricio Latorre,Maria-Paz Cortés,Mauricio Gonzales,Sven Thieleet al. MicrobiologyOpen, 2016, 5 (1), pp.106-117. ⟨10.1002/mbo3.315⟩ Article dans une revue hal-01246173v1
Integrated analysis of the gene neighbouring impact on bacterial metabolic networks. P. Bordron,D. Eveillard,I. Rusu IET Systems Biology, 2011, 5 (4), pp.261-268. ⟨10.1049/iet-syb.2010.0070⟩ Article dans une revue hal-00626709v1

Autre publication scientifique (1)

3’ RNA sequencing for robust and low-cost gene expression profiling Eric Charpentier,Marine Cornec,Solenne Dumont,Dimitri Meistermann,Philippe Bordronet al. 2021, ⟨10.21203/rs.3.pex-1336/v1⟩ Autre publication scientifique hal-05072740v1

Communication dans un congrès (3)

An ASP application in integrative biology: identification of functional gene units Philippe Bordron,Damien Eveillard,Alejandro Maass,Anne Siegel,Sven Thiele LPNMR - 12th Conference on Logic Programming and Nonmonotonic Reasoning - 2013, Sep 2013, Corunna, Spain Communication dans un congrès hal-00853762v1
Integration of omics data to investigate common intervals Sébastien Angibaud,Philippe Bordron,Damien Eveillard,Guillaume Fertin,Irena Rusu 1st International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2011), 2011, Singapore, Singapore. pp.101-105 Communication dans un congrès hal-00606226v1
SIPPER: A flexible method to integrate heterogeneous data into a metabolic network Philippe Bordron,Damien Eveillard,Irena Rusu Computational Advances in Bio and Medical Sciences (ICCABS), 2011 IEEE 1st International Conference on, Feb 2011, Orlando, United States. pp.40 - 45, ⟨10.1109/ICCABS.2011.5729937⟩ Communication dans un congrès hal-00585102v1

Thèse (1)

Analyse des systèmes bactériens: une approche in silico pour intégrer les connaissances du vivant Philippe Bordron Bio-informatique [q-bio.QM]. Université de Nantes, 2012. Français. ⟨NNT : ⟩ Thèse tel-00743412v1