Philippe Deschamps

Publications

Article dans une revue (34)

Parasitic connections: a patescibacterial epibiont, its methylotrophic gammaproteobacterial host, and their phages Feriel Bouderka,Purificación López-García,Philippe Deschamps,Yifan Zhou,Mart Krupovicet al. mBio, In press, ⟨10.1128/mbio.00025-26⟩ Article dans une revue hal-05555718v1
Molecular Phylogeny of the SELMA Translocation Machinery Recounts the Evolution of Complex Photosynthetic Eukaryotes Rafael Ponce-Toledo,David Moreira,Purificación López-García,Philippe Deschamps Molecular Biology and Evolution, 2025, 42 (9), ⟨10.1093/molbev/msaf167⟩ Article dans une revue hal-05387665v1
An alternative pathway to starch granule initiation unraveled in Chlamydomonas reinhardtii Adeline Courseaux,Philippe Deschamps,David Dauvillée Plant and Cell Physiology, 2025, ⟨10.1093/pcp/pcaf019⟩ Article dans une revue hal-04931710v1
BE3 is the major branching enzyme isoform required for amylopectin synthesis in Chlamydomonas reinhardtii Adeline Courseaux,Océane George,Philippe Deschamps,Coralie Bompard,Thierry Duchêneet al. Frontiers in Plant Science, 2023, 14, pp.1201386. ⟨10.3389/fpls.2023.1201386⟩ Article dans une revue hal-04112980v1
Metagenome-derived virus-microbe ratios across ecosystems Purificación López-García,Ana Gutiérrez-Preciado,Mart Krupovic,Maria Ciobanu,Philippe Deschampset al. The International Society of Microbiologial Ecology Journal, 2023, 17 (10), pp.1552-1563. ⟨10.1038/s41396-023-01431-y⟩ Article dans une revue hal-04108767v1
Core microbial communities of lacustrine microbialites sampled along an alkalinity gradient Miguel Iniesto,David Moreira,Guillaume Reboul,Philippe Deschamps,Karim Benzeraraet al. Environmental Microbiology, 2021, 23, pp.51-68. ⟨10.1111/1462-2920.15252⟩ Article dans une revue hal-02988545v1
Archaeal overdominance close to life-limiting conditions in geothermally influenced hypersaline lakes at the Danakil Depression, Ethiopia Jodie Belilla,Miguel Iniesto,David Moreira,Karim Benzerara,José María López‐garcíaet al. Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15771⟩ Article dans une revue hal-03384106v1
Small freshwater ecosystems with dissimilar microbial communities exhibit similar temporal patterns Gwendoline David,Purificación López‐garcía,David Moreira,Benjamin Alric,Philippe Deschampset al. Molecular Ecology, 2021, 30 (9), pp.2162-2177. ⟨10.1111/mec.15864⟩ Article dans une revue hal-03327969v1
Large-scale geography survey provides insights into the colonization history of a major aphid pest on its cultivated apple host in Europe, North America and North Africa S.G. Olvera-Vazquez,C. Remoué,A. Venon,A. Rousselet,O. Grandcolaset al. Peer Community Journal, 2021, 1, pp.e34. ⟨10.24072/pcjournal.26⟩ Article dans une revue hal-03605093v1
Secondary Plastids of Euglenids and Chlorarachniophytes Function with a Mix of Genes of Red and Green Algal Ancestry Rafael I Ponce-Toledo,David Moreira,Purificacion Lopez-Garcia,Philippe Deschamps Molecular Biology and Evolution, 2018, 35 (9), pp.2198-2204. ⟨10.1093/molbev/msy121⟩ Article dans une revue hal-02108901v1
Functional shifts in microbial mats recapitulate early Earth metabolic transitions Ana Gutiérrez-Preciado,Aurélien Saghaï,David Moreira,Yvan Zivanovic,Philippe Deschampset al. Nature Ecology & Evolution, 2018, 2 (11), pp.1700-1708. ⟨10.1038/s41559-018-0683-3⟩ Article dans une revue hal-02996248v1
The Chlamydomonas mex1 mutant shows impaired starch mobilization without maltose accumulation Justin Findinier,Hande Tunçay,Miriam Schulz-Raffelt,Philippe Deschamps,Corentin Sprietet al. Journal of Experimental Botany, 2017, 68 (18), pp.5177-5189. ⟨10.1093/jxb/erx343⟩ Article dans une revue cea-02023216v1
Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond Aurélien Saghaï,Ana Gutiérrez-Preciado,Philippe Deschamps,David Moreira,Paola Bertolinoet al. Environmental Microbiology, 2017, 19 (6), pp.2405-2421. ⟨10.1111/1462-2920.13754⟩ Article dans une revue hal-03872172v1
An Early-Branching Freshwater Cyanobacterium at the Origin of Plastids Rafael I Ponce-Toledo,Philippe Deschamps,Purificación López-García,Yvan Zivanovic,Karim Benzeraraet al. Current Biology, 2017, 27 (3), pp.386-391. ⟨10.1016/j.cub.2016.11.056⟩ Article dans une revue hal-01741643v1
Resilience of Freshwater Communities of Small Microbial Eukaryotes Undergoing Severe Drought Events Marianne Simon,Purificación López-García,Philippe Deschamps,Gwendal Restoux,Paola Bertolinoet al. Frontiers in Microbiology, 2016, 7, pp.812. ⟨10.3389/fmicb.2016.00812⟩ Article dans une revue hal-01587905v1
Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites Aurélien Saghaï,Yvan Zivanovic,Nina Zeyen,David Moreira,Karim Benzeraraet al. Frontiers in Microbiology, 2015, 6, pp.797. ⟨10.3389/fmicb.2015.00797⟩ Article dans une revue hal-01221204v1
Bacterial gene import and mesophilic adaptation in archaea Purificación López-García,Yvan Zivanovic,Philippe Deschamps,David Moreira Nature Reviews Microbiology, 2015, 13 (7), pp.447 - 456. ⟨10.1038/nrmicro3485⟩ Article dans une revue hal-01438307v1
Extending the conserved phylogenetic core of \textitarchaea disentangles the evolution of the third domain of life C. Petitjean,P. Deschamps,P. Lopez-Garcia,D. Moreira,Céline Brochier-Armanet Molecular Biology and Evolution, 2015, 32, pp.1242-54 Article dans une revue hal-02025628v1
Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems Marianne Simon,Ludwig Jardillier,Philippe Deschamps,David Moreira,Gwendal Restouxet al. Environmental Microbiology, 2015, 17 (10), pp.3610-3627. ⟨10.1111/1462-2920.12591⟩ Article dans une revue hal-03022575v1
Colonization of plant substrates at hydrothermal vents and cold seeps in the northeast Atlantic and Mediterranean and occurrence of symbiont-related bacteria Kamil M. Szafranski,Philippe Deschamps,Marina R. Cunha,Sylvie Marylène Gaudron,Sébastien Duperron Frontiers in Microbiology, 2015, 6, pp.162. ⟨10.3389/fmicb.2015.00162⟩ Article dans une revue hal-01221485v1
Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study Charles Bachy,John R. Dolan,Purificación López-García,Philippe Deschamps,David Moreira The International Society of Microbiologial Ecology Journal, 2013, 7 (2), pp.244-255. ⟨10.1038/ismej.2012.106⟩ Article dans une revue hal-03502641v1
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Jonas Collén,Betina Porcel,Wilfrid Carré,Steven G Ball,Cristian Chaparroet al. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩ Article dans une revue hal-01073830v1
Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea. Céline Brochier-Armanet,Philippe Deschamps,Purificación López-García,Yvan Zivanovic,Francisco Rodríguez-Valeraet al. The International Society of Microbiologial Ecology Journal, 2011, 5 (8), pp.1291-302. ⟨10.1038/ismej.2011.16⟩ Article dans une revue hal-00662567v1
Phylogenetic and biochemical evidence supports the recruitment of an ADP-glucose translocator for the export of photosynthate during plastid endosymbiosis. Christophe Colleoni,Marc Linka,Philippe Deschamps,Michael G Handford,Paul Dupreeet al. Molecular Biology and Evolution, 2010, epub ahead of print. ⟨10.1093/molbev/msq158⟩ Article dans une revue hal-00495914v1
Genetic dissection of floridean starch synthesis in the cytosol of the model dinoflagellate Crypthecodinium cohnii. David Dauvillée,Philippe Deschamps,Jean-Philippe Ral,Charlotte Plancke,Jean-Luc Putauxet al. Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (50), pp.21126-21130. ⟨10.1073/pnas.0907424106⟩ Article dans une revue hal-00436589v1
The relocation of starch metabolism to chloroplasts: when, why and how. Philippe Deschamps,Ilka Haferkamp,Christophe d'Hulst,H Ekkehard Neuhaus,Steven G Ball Trends in Plant Science, 2008, epub ahead of print. ⟨10.1016/j.tplants.2008.08.009⟩ Article dans une revue istex hal-00326081v1
The heterotrophic dinoflagellate Crypthecodinium cohnii defines a model genetic system to investigate cytoplasmic starch synthesis. Philippe Deschamps,Delphine Guillebeault,Jimi Devassine,David Dauvillée,Sophie Haebelet al. Eukaryotic Cell, 2008, 7 (5), pp.872-80. ⟨10.1128/EC.00461-07⟩ Article dans une revue hal-00267765v1
Early Gene Duplication within Chloroplastida and its correspondence with Relocation of Starch Metabolism to Chloroplasts. Philippe Deschamps,Hervé Moreau,Alexandra Z Worden,David Dauvillée,Steven Ball Genetics, 2008, 178, pp.2373-2387. ⟨10.1534/genetics.108.087205⟩ Article dans une revue hal-00247313v1
THE PATHWAY OF CYTOSOLIC STARCH SYNTHESIS IN THE MODEL GLAUCOPHYTE CYANOPHORA PARADOXA. Charlotte Plancke,Christophe Colleoni,Philippe Deschamps,David Dauvillée,Yasunori Nakamuraet al. Eukaryotic Cell, 2007, 7 (2), epub ahead of print. ⟨10.1128/EC.00373-07⟩ Article dans une revue hal-00198810v1
Metabolic Symbiosis and the Birth of the Plant Kingdom. Philippe Deschamps,Christophe Colleoni,Yasunori Nakamura,Eiji Suzuki,Jean-Luc Putauxet al. Molecular Biology and Evolution, 2007, 25 (3), epub ahead of print. ⟨10.1093/molbev/msm280⟩ Article dans une revue hal-00250123v1
Nature of the periplastidial pathway of starch synthesis in the cryptophyte Guillardia theta. Philippe Deschamps,Ilka Haferkamp,David Dauvillée,Sophie Haebel,Martin Steupet al. Eukaryotic Cell, 2006, 5 (6), pp.954-63. ⟨10.1128/EC.00380-05⟩ Article dans une revue hal-00198811v1
Circadian clock regulation of starch metabolism establishes GBSSI as a major contributor to amylopectin synthesis in Chlamydomonas reinhardtii Jean-Philippe Ral,Christophe Colleoni,Fabrice Wattebled,David Dauvillee,Clement Nempontet al. Plant Physiology, 2006, 142, pp.305-317 Article dans une revue hal-00092079v1
Plastidial phosphorylase is required for normal starch synthesis in Chlamydomonas reinhardtii David Dauvillee,Vincent Chochois,Martin Steup,Sophie Haebel,Nora Eckermannet al. The Plant Journal, 2006, 48, pp.274-285 Article dans une revue hal-00092272v1
Molecular and Biochemical Analysis of Periplastidial Starch Metabolism in the Cryptophyte Guillardia theta Ilka Haferkamp,Philippe Deschamps,Michelle Ast,Wolfgang Jeblick,Uwe Maieret al. Eukaryotic cell., 2006, 5, pp.964-971 Article dans une revue hal-00085428v1

Chapitre d'ouvrage (2)

The Comparative, Biochemistry, Genetics and Evolution of Starch Metabolism in Chlamydomonas reinhardtii Philippe Deschamps,Steven Ball,David Dauvillee Goodenough, Ursula; Grossman, Arthur; Wollman, Francis-André. The Chlamydomonas Sourcebook: Volume 2 Organellar and Metabolic Processes 3rd edition, Elsevier, 2022, 9780128224571. ⟨10.1016/C2019-0-02810-5⟩ Chapitre d'ouvrage hal-03798391v1
Genome Sequence Databases: Types of Data and Bioinformatic Tools Ana Gutiérrez-Preciado,Philippe Deschamps,Tom Delmont,Claudia Chica,Nathan A.M. Chrismaset al. Reference Module in Biomedical Sciences, Elsevier, 2019, ⟨10.1016/b978-0-12-801238-3.99223-7⟩ Chapitre d'ouvrage hal-02378810v1