Philippe Roudot

Identifiants chercheurs

IdHAL :

philippe-roudot

ORCID :

0000-0001-6632-8728

ResearcherID :

LUZ-5694-2024

Publications

Pré-publication, Document de travail (3)

Attention-Bayesian Hybrid Approach to Modular Multiple Particle Tracking Piyush Mishra,Philippe Roudot 2025 Pré-publication, Document de travail hal-05089119v1
A quantitative pipeline for whole-mount deep imaging and multiscale analysis of gastruloids Alice Gros,Jules Vanaret,Valentin Dunsing-Eichenauer,Agathe Rostan,Philippe Roudotet al. 2024 Pré-publication, Document de travail hal-04799747v1
A detector-independent quality score for cell segmentation without ground truth in 3D live fluorescence microscopy Jules Vanaret,Victoria Dupuis,Pierre-François Lenne,Frédéric Jp Richard,Sham Tliliet al. 2023 Pré-publication, Document de travail hal-03923509v2

Article dans une revue (6)

Direct Arp2/3-vinculin binding is required for pseudopod extension, but only on compliant substrates and in 3D Tadamoto Isogai,Kevin M Dean,Philippe Roudot,Evgenia V Azarova,Kushal Bhattet al. iScience, 2025, 28 (6), pp.112623. ⟨10.1016/j.isci.2025.112623⟩ Article dans une revue hal-05397465v1
u-track3D: Measuring, navigating, and validating dense particle trajectories in three dimensions Philippe Roudot,Wesley Legant,Qiongjing Zou,Kevin Dean,Tadamoto Isogaiet al. Cell Reports Methods, 2023, 3 (12), pp.100655. ⟨10.1016/j.crmeth.2023.100655⟩ Article dans une revue hal-04434297v1
3D Flow Field Estimation and Assessment for Live Cell Fluorescence Microscopy Sandeep Manandhar,Patrick Bouthemy,Erik Welf,Gaudenz Danuser,Philippe Roudotet al. Bioinformatics, 2020, 36 (5), pp.1317-1325. ⟨10.1093/bioinformatics/btz780⟩ Article dans une revue hal-02308001v1
Piecewise-stationary motion modeling and iterative smoothing to track heterogeneous particle motions in dense environments Philippe Roudot,Liya Ding,Khuloud Jaqaman,Charles Kervrann,Gaudenz Danuser IEEE Transactions on Image Processing, 2017, 26 (11), pp.5395 - 5410. ⟨10.1109/TIP.2017.2707803⟩ Article dans une revue hal-01575754v1
Lifetime estimation on moving sub-cellular objects in frequency domain FLIM imaging Philippe Roudot,Charles Kervrann,Cedric Blouin,Francois Waharte Journal of the Optical Society of America. A Optics, Image Science, and Vision, 2015, 32 (10), pp.15. ⟨10.1364/JOSAA.32.001821⟩ Article dans une revue hal-01246392v1
Objective comparison of particle tracking methods Nicolas Chenouard,Ihor Smal,Fabrice de Chaumont,Martin Maska,Ivo F. Sbalzariniet al. Nature Methods, 2014, 11 (3), pp.281-289. ⟨10.1038/nmeth.2808⟩ Article dans une revue hal-00932869v1

Communication dans un congrès (10)

Comparative study of transformer robustness for multiple particle tracking without clutter Piyush Mishra,Philippe Roudot EUSIPCO, Aug 2024, Lyon, France Communication dans un congrès hal-04619330v1
3D Optical Flow Estimation Combining 3D Census Signature and Total Variation Regularization Sandeep Manandhar,Patrick Bouthemy,Eric Welf,Philippe Roudot,Charles Kervrann ISBI 2020 - IEEE 17th International Symposium on Biomedical Imaging, Apr 2020, Iowa City, United States. pp.965-968, ⟨10.1109/ISBI45749.2020.9098690⟩ Communication dans un congrès hal-03085956v1
3D motion estimation in 3D light microscopy image sequences: application to cell migration Sandeep Manandhar,Patrick Bouthemy,Philippe Roudot,Charles Kervrann QBI 2019 - Quantitative BioImaging Conference, Jan 2019, Rennes, France Communication dans un congrès hal-02424694v1
A sparse-to-dense method for 3D optical flow estimation in 3D light microscopy image sequences Sandeep Manandhar,Patrick Bouthemy,Erik Welf,Philippe Roudot,Charles Kervrann ISBI 2018 - IEEE 15th International Symposium on Biomedical Imaging, Apr 2018, Washington DC, United States. pp.952-956, ⟨10.1109/ISBI.2018.8363728⟩ Communication dans un congrès hal-01960109v1
Tracking heterogeneous particle motions in dense intra-cellular environments Philippe Roudot,Liya Ding,Khuloud Jaqaman,Charles Kervrann,Danuser Gaudenz SIAM Conference on Imaging Science, SIAM, May 2016, Albuquerque, United States Communication dans un congrès hal-01575767v1
Approximate Bayesian Computation, stochastic algorithms and non-local means for complex noise models Charles Kervrann,Philippe Roudot,François Waharte IEEE International Conference on Image Processing, Oct 2014, Paris, France. pp.4 Communication dans un congrès hal-01103322v1
Noise modeling for intensified camera in fluorescence imaging: application to image denoising Philippe Roudot,Charles Kervrann,Jérôme Boulanger,François Waharte ISBI - IEEE International Symposium on Biomedical Imaging, Apr 2013, San-Francisco, United States. pp.600-603, ⟨10.1109/ISBI.2013.6556546⟩ Communication dans un congrès hal-00931360v1
Lifetime MAP reconstruction in frequency-domain fluorescence lifetime imaging microscopy Philippe Roudot,Charles Kervrann,François Waharte,Jérôme Boulanger IEEE International Conference on Image Processing, ICIP 2012, Oct 2012, Orlando, FL, United States Communication dans un congrès hal-00763803v1
Semi-parametric robust Gaussian fitting Philippe Roudot,Charles Kervrann,François Waharte IEEE ISBI 2012 Workshop: Particle Tracking Challenge, May 2012, Barcelona, Spain Communication dans un congrès hal-00763820v1
Lifetime estimation of moving vesicles in frequency-domain fluorescence lifetime imaging microscopy Philippe Roudot,Charles Kervrann,François Waharte IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012, May 2012, Barcelona, Spain. pp.668-671, ⟨10.1109/ISBI.2012.6235636⟩ Communication dans un congrès hal-00763790v1

Thèse (1)

Image Processing Methods for Dynamical Intracellular Processes Analysis in QuantitativeFluorescence Microscopy Philippe Roudot Image Processing [eess.IV]. Universite Rennes 1, 2014. English. ⟨NNT : ⟩ Thèse tel-01103887v1