Pedro H. Oliveira Lab Head / Research Director

Identifiants chercheurs

IdHAL :

pholive

ORCID :

0000-0003-3161-8367

ResearcherID :

E-4818-2011

Publications

Article dans une revue (29)

Sustainability insights from Late Pleistocene climate change and horse migration patterns Yvette Running Horse Collin,Clément Bataille,Samantha Hershauer,Mila Hunska Tašunke Icu,Akil Nujipiet al. Science, 2025, 388 (6748), pp.748-755. ⟨10.1126/science.adr2355⟩ Article dans une revue hal-05216355v1
Sustainability insights from Late Pleistocene climate change and horse migration patterns Yvette Running Horse Collin,Clément Bataille,Samantha Hershauer,Mila Hunska Tašunke Icu,Akil Nujipiet al. Science, 2025, 388 (6748), pp.748-755. ⟨10.1126/science.adr2355⟩ Article dans une revue hal-05343796v1
Complete genome sequence of Nitratireductor aquimarinus strain MNA2.1 isolated from sediments of the Berre lagoon, France Nathalie Pradel,Stéphanie Fouteau,Manon Bartoli,Zoé Rouy,Corinne Cruaudet al. Microbiology Resource Announcements, 2025, 14, ⟨10.1128/mra.00259-25⟩ Article dans une revue hal-05394740v1
ERGA-BGE genome of Xanthium orientale subsp. italicum (Moretti) Greuter. A plant of American origin, now widespread and, in some cases, invasive in Europe Salvatore Tomasello,Eleonora Manzo,Rita Monteiro,Astrid Böhne,Thomas Marcussenet al. Open Research Europe, 2025, 5, pp.367. ⟨10.12688/openreseurope.21891.1⟩ Article dans une revue hal-05464158v1
Complete genome sequence of $Hyphomicrobium/ sp$ . strain 1Nfss2.1 from marine sediments of the Berre lagoon, France Manon Bartoli,Nathalie Pradel,Stéphanie Fouteau,Zoé Rouy,Corinne Cruaudet al. Microbiology Resource Announcements, 2025, ⟨10.1128/mra.00254-25⟩ Article dans une revue cea-05163110v1
ERGA-BGE reference genome of Lewinskya acuminata, a common epiphytic Mediterranean moss with disjunct populations in California and Ethiopia Pablo Aguado-Ramsay,Francisco Lara,Isabel Draper,Maria Conejero,Astrid Böhneet al. Open Research Europe, 2025, 5, pp.357. ⟨10.12688/openreseurope.21670.1⟩ Article dans une revue cea-05483813v1
Bacillus paralicheniformis strain H12 from saline soil for the management of gray mold in cherry tomatoes Amina Ghozlani,Fatma Driss,Duong Huy Nguyen,Hanane Boumerdassi,Fairouz El Aicharet al. World Journal of Microbiology and Biotechnology, 2025, 41, pp.386. ⟨10.1007/s11274-025-04629-8⟩ Article dans une revue hal-05398882v1
ERGA-BGE reference genome of Eunicella cavolini, an IUCN Near Threatened Gorgonian of the Mediterranean Sea Didier Aurelle,Dorian Guillemain,Frédéric Zuberer,Denys Malengros,Astrid Böhneet al. Open Research Europe, 2025, 5, pp.323. ⟨10.12688/openreseurope.21514.1⟩ Article dans une revue hal-05505155v1
Straight from the Horse’s Mouth: Timing and Zoogeography of Domesticated Horse Arrivals in Mongolia and China William Honeychurch,Rong Fan,Leland Rogers,Mark E. Hall,Chunag Amartuvshinet al. Journal of Archaeological Method and Theory, 2025, 32 (1), pp.27. ⟨10.1007/s10816-024-09691-4⟩ Article dans une revue cea-05047023v1
$Tepidibacter\ aestuarii$ sp. nov., isolated from the Bach Dang Estuary, Haiphong, Vietnam Nathalie Pradel,Sandrine Chifflet,Angelina Beavogui,Manon Bartoli,Thuoc Chu Vanet al. International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (1), ⟨10.1099/ijsem.0.006237⟩ Article dans une revue cea-04610770v1
High altitude horse use and early horse transport in eastern Eurasia: New evidence from melting ice William Timothy Treal Taylor,Isaac Hart,Tumurbaatar Tuvshinjargal,Jamsranjav Bayarsaikhan,Nicholas Jarmanet al. The Holocene, 2024, 34 (9), pp.1204-1213. ⟨10.1177/09596836241254484⟩ Article dans une revue hal-04780801v1
Genome-wide population affinities and signatures of adaptation in hydruntines, sussemiones and Asian wild asses Jianfei Pan,Xuexue Liu,Mateusz Baca,Laure Calvière-Tonasso,Stéphanie Schiavinatoet al. Molecular Ecology, 2024, 33 (19), pp.e17527. ⟨10.1111/mec.17527⟩ Article dans une revue hal-04729863v1
Diversity of the Pacific Ocean coral reef microbiome Pierre Galand,Hans-Joachim Ruscheweyh,Guillem Salazar,Corentin Hochart,Nicolas Henryet al. Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩ Article dans une revue hal-04176291v1
The defensome of complex bacterial communities Angelina Beavogui,Auriane Lacroix,Nicolas Wiart,Julie Poulain,Tom O Delmontet al. Nature Communications, 2023, 15, pp.2146. ⟨10.1101/2023.08.12.553040⟩ Article dans une revue hal-04406189v2
Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition Caroline Belser,Julie Poulain,Karine Labadie,Frederick Gavory,Adriana Albertiet al. Scientific Data , 2023, 10 (1), pp.326. ⟨10.1038/s41597-023-02204-0⟩ Article dans une revue hal-04176297v3
Complete Genome Sequence of Tepidibacter sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam Stéphanie Fouteau,Vuong Bui Van,Zoé Rouy,Mélanie Beraud,Corinne Cruaudet al. Microbiology Resource Announcements, 2022, 11 (7), ⟨10.1128/mra.00132-22⟩ Article dans une revue hal-03778996v1
Conserved DNA Methyltransferases: A Window into Fundamental Mechanisms of Epigenetic Regulation in Bacteria Pedro H. Oliveira,Gang Fang Trends in Microbiology, 2021, 29 (1), pp.28-40. ⟨10.1016/j.tim.2020.04.007⟩ Article dans une revue hal-04325259v1
Bacterial epigenomics: coming of age Pedro H. Oliveira mSystems, 2021, 6 (4), pp.e00747-21. ⟨10.1128/mSystems.00747-21⟩ Article dans une revue hal-04288989v1
Gnaiger E and the MitoEAGLE task group. Mitochondrial physiology Erich Gnaiger,Eleonor Aasander Frostner,Norwahidah Abdul Karim,Engy Ali Abdel-Rahman,Nada Abumradet al. Bioenergetics Communications , 2020, ⟨10.26124/bec:2020-0001.v1⟩ Article dans une revue hal-04614093v1
Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis Pedro Oliveira,John Ribis,Elizabeth Garrett,Dominika Trzilova,Alex Kimet al. Nature Microbiology, 2020, 5 (1), pp.166-180. ⟨10.1038/s41564-019-0613-4⟩ Article dans une revue hal-02988691v1
The chromosomal organization of horizontal gene transfer in bacteria Pedro H. Oliveira,Marie Touchon,Jean Cury,Eduardo P C Rocha Nature Communications, 2017, 8 (1), pp.841. ⟨10.1038/s41467-017-00808-w⟩ Article dans une revue hal-04325283v1
Regulation of genetic flux between bacteria by restriction–modification systems Pedro H. Oliveira,Marie Touchon,Eduardo P. C. Rocha Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (20), pp.5658 - 5663. ⟨10.1073/pnas.1603257113⟩ Article dans une revue pasteur-01374969v1
The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts P. H. Oliveira,M. Touchon,E. P. C. Rocha Nucleic Acids Research, 2014, 42 (16), pp.10618 - 10631. ⟨10.1093/nar/gku734⟩ Article dans une revue pasteur-01374960v1
Concise Review: Genomic Instability in Human Stem Cells: Current Status and Future Challenges Pedro H Oliveira,Cláudia Lobato Silva,Joaquim M S Cabral STEM CELLS, 2014, 32, pp.2824 - 2832. ⟨10.1002/stem.1796⟩ Article dans une revue hal-04406078v1
Marker-free plasmids for biotechnological applications – implications and perspectives Pedro Oliveira,Juergen Mairhofer Trends in Biotechnology, 2013, 31 (9), pp.539-547. ⟨10.1016/j.tibtech.2013.06.001⟩ Article dans une revue istex hal-04328020v1
Impact of hypoxia and long-term cultivation on the genomic stability and mitochondrial performance of ex vivo expanded human stem/stromal cells Pedro H Oliveira,Joana S Boura,Manuel M Abecasis,Jeffrey M Gimble,Cláudia Lobato da Silvaet al. Stem Cell Research, 2012, 9 (3), pp.225-236. ⟨10.1016/j.scr.2012.07.001⟩ Article dans une revue hal-04328032v1
Analysis of DNA repeats in bacterial plasmids reveals the potential for recurrent instability events Pedro H Oliveira,Kristala Jones Prather,Duarte M F Prazeres,Gabriel A Monteiro Applied Microbiology and Biotechnology, 2010, 87, pp.2157 - 2167. ⟨10.1007/s00253-010-2671-7⟩ Article dans une revue hal-04406004v1
Structural instability of plasmid biopharmaceuticals: challenges and implications Pedro Oliveira,Kristala Jones Prather,Duarte M.F. Prazeres,Gabriel A Monteiro Trends in Biotechnology, 2009, 27 (9), pp.503-511. ⟨10.1016/j.tibtech.2009.06.004⟩ Article dans une revue istex hal-04325314v1
Recombination frequency in plasmid DNA containing direct repeats—predictive correlation with repeat and intervening sequence length Pedro H Oliveira,Francisco Lemos,Gabriel A Monteiro,Duarte M F Prazeres Plasmid, 2008, 60, pp.159 - 165. ⟨10.1016/j.plasmid.2008.06.004⟩ Article dans une revue istex hal-04406241v1

Communication dans un congrès (3)

European mink (Mustela lutreola) reference genome and population genomics Alice Mouton,Christine Fournier-Chambrillon,Pascal Fournier,Jakub Skorupski,Przemysław Śmietanaet al. 34th European Mustelid Colloquium, Sep 2022, Online conference, France Communication dans un congrès hal-03787589v1
The anti-phage defensome of ocean, soil, and human gut microbiomes Pedro H. Oliveira Microbiome Meeting, Cold Spring Harbor, Oct 2022, New York, NY, United States Communication dans un congrès hal-04406266v1
Conserved DNA methyltransferases as keystones of epigenetic regulation in Bacteria Pedro H. Oliveira 26th Boston Bacterial Meeting, Jul 2020, Boston (MA), United States Communication dans un congrès hal-04406307v1

Ouvrages (1)

Computational Epigenomics and Epitranscriptomics Pedro Oliveira Springer US, 2624, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2962-8⟩ Ouvrages hal-04406144v1

Pré-publication, Document de travail (3)

Genome-resolved diversity and biosynthetic potential of the coral reef microbiome Lucas Paoli,Fabienne Wiederkehr,Hans-Joachim Ruscheweyh,Samuel Miravet-Verde,Kalia S.I. Bistolaset al. 2024 Pré-publication, Document de travail hal-04807685v1
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics Ann M Mc Cartney,Giulio Formenti,Alice Mouton,Diego de Panis,Luísa S Marinset al. 2024 Pré-publication, Document de travail hal-04406124v1
Mitochondrial respiratory states and rates Erich Gnaiger,Eleonor Aasander Frostner,Norwahidah Abdul Karim,Nada Abumrad,Dario Acuna-Castroviejoet al. 2025 Pré-publication, Document de travail hal-04914425v1

HDR (1)

Diversity, dynamics and evolution of bacterial epigenomes Pedro H. Oliveira Life Sciences [q-bio]. University of Paris Saclay, 2022 HDR tel-04562706v1