Pierre-Alexandre Gagnaire

Identifiants chercheurs

IdHAL :

pierre-alexandre-gagnaire

ORCID :

0000-0002-1908-3235

IdRef :

137765401

ResearcherID :

http://www.researcherid.com/rid/S-2352-2019

Présentation

Publications

Article dans une revue (73)

Genome divergence between European anchovy ecotypes fuelled by structural variants originating from trans-equatorial admixture Laura Meyer,Pierre Barry,Alan Le Moan,Christine Arbiol,Rita Castilhoet al. Proceedings of the Royal Society B: Biological Sciences, 2025, 292 (2058), ⟨10.1098/rspb.2025.1416⟩ Article dans une revue hal-05348288v1
A mosaic of modular variation at a single gene underpins convergent plumage coloration Dave Lutgen,Valentina Peona,Madeline Chase,Niloofar Alaei Kakhki,Fritjof Lammerset al. Science, 2025, 390 (6770), ⟨10.1126/science.ado8005⟩ Article dans une revue (data paper) hal-05544508v1
Comparative Population Genomics Unveils Congruent Secondary Suture Zone in Southwest Pacific Hydrothermal Vents Adrien Tran Lu Y,Stéphanie Ruault,Claire Daguin-Thiebaut,Anne-Sophie Le Port,Marion Ballenghienet al. Molecular Biology and Evolution, 2025, 42 (2), ⟨10.1093/molbev/msaf024⟩ Article dans une revue hal-05557471v1
PRDM9 drives the location and rapid evolution of recombination hotspots in salmonids fish Marie Raynaud,Paola Sanna,Julien Joseph,Julie A. J. Clément,Yukiko Imaiet al. PLoS Biology, 2025, 23 (1), pp.e3002950. ⟨10.1371/journal.pbio.3002950⟩ Article dans une revue hal-04880059v1
Comparative population genomics unveils congruent secondary suture zone in Southwest Pacific Hydrothermal Vents Adrien Tran Lu Y,Stéphanie Ruault,Claire Daguin-Thiébaut,Anne‐sophie Le Port,Marion Ballenghienet al. Molecular Biology and Evolution, 2025, 42 (2), pp.msaf024. ⟨10.1093/molbev/msaf024⟩ Article dans une revue hal-04973623v2
High residual additive genetic variability in a Pacific blue shrimp Litopenaeus stylirostris population after 36 generations of domestication from only 4 estimated founders Pierrick Haffray,F. Enez,H. Mahunon,B. Lorgeoux,P.P. Blancet al. Aquaculture, 2025, 609, pp.742835. ⟨10.1016/j.aquaculture.2025.742835⟩ Article dans une revue hal-05168308v1
Sex chromosomes and chromosomal rearrangements are key to behavioural sexual isolation in Jaera albifrons marine isopods Ambre Ribardiere,Claire Daguin-Thiebaut,Jerome Coudret,Gildas Le Corguille,Komlan Aviaet al. BioRxiv, 2025, ⟨10.1101/2025.01.08.631900⟩ Article dans une revue hal-05557629v1
Divergence and gene flow history at two large chromosomal inversions underlying ecotype differentiation in the long‐snouted seahorse Laura Meyer,Pierre Barry,Florentine Riquet,Andrew Foote,Anaïs Bordeset al. Molecular Ecology, 2024, 33 (24), pp.e17277. ⟨10.1111/mec.17277⟩ Article dans une revue hal-04788167v1
Comparative population genomics unveils congruent secondary suture zone in Southwest Pacific Hydrothermal Vents Adrien Tran Lu Y,Stéphanie Ruault,Claire Daguin-Thiébaut,Anne-Sophie Le Port,Marion Ballenghienet al. Frontiers in Ecology and Evolution, 2024, 12 (42), pp.18969-18979. ⟨10.1101/2024.05.31.596862⟩ Article dans une revue hal-05013556v1
The fate of a polygenic phenotype within the genomic landscapes of introgression in the European seabass hybrid zone Maeva Leitwein,G Durif,E Delpuech,P Gagnaire,B Ernandeet al. Molecular Biology and Evolution, 2024, 41 (9), pp.msae194. ⟨10.1093/molbev/msae194⟩ Article dans une revue hal-04705605v1
Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study Marie Raynaud,Pierre-Alexandre Gagnaire,Nicolas Galtier Peer Community Journal, 2023, 3, pp.e27. ⟨10.24072/pcjournal.254⟩ Article dans une revue hal-03879740v1
Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha Jade Castel,Stéphane Hourdez,Florence Pradillon,Claire Daguin-Thiébaut,Marion Ballenghienet al. Genes, 2022, 13 (6), pp.985. ⟨10.3390/genes13060985⟩ Article dans une revue hal-03771381v1
Age-specific survivorship and fecundity shape genetic diversity in marine fishes Pierre Barry,Thomas Broquet,Pierre-Alexandre Gagnaire Evolution Letters, 2022, 6 (1), pp.46-62. ⟨10.1002/evl3.265⟩ Article dans une revue hal-03443785v2
Introgression between highly divergent sea squirt genomes: an adaptive breakthrough? Christelle Fraïsse,Alan Le Moan,Camille Roux,Guillaume Dubois,Claire Daguin-Thiébautet al. Peer Community Journal, 2022, 2, pp.e54. ⟨10.24072/pcjournal.172⟩ Article dans une revue hal-03817700v1
Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei Adrien Tran Y. Lu,Stephanie Ruault,Claire Daguin-Thiébaut,Jade Castel,Nicolas Bierneet al. Molecular Ecology, 2022, 31 (10), pp.2796-2813. ⟨10.1111/mec.16430⟩ Article dans une revue hal-03669635v1
Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish Israel Guerrero-Cózar,Jessica Gomez-Garrido,Concha Berbel,Juan Martinez-Blanch,Tyler Aliotoet al. Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-92601-5⟩ Article dans une revue hal-03443762v1
Systematics of European coastal anchovies (genus Engraulis Cuvier) François Bonhomme,Laura Meyer,Christine Arbiol,Daniela Bănaru,Lilia Bahri‐sfaret al. Journal of Fish Biology, 2021, 100 (2), pp.594-600. ⟨10.1111/jfb.14964⟩ Article dans une revue hal-03589330v1
Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip Ronan Griot,François Allal,Florence Phocas,Sophie Brard-Fudulea,Romain Morvezenet al. Aquaculture, 2021, 530, pp.735930. ⟨10.1016/j.aquaculture.2020.735930⟩ Article dans une revue hal-03544239v1
Spatial gradients of introgressed ancestry reveal cryptic connectivity patterns in a high gene flow marine fish Tony Robinet,Valérie Roussel,Karine Cheze,Pierre-Alexandre Gagnaire Molecular Ecology, 2020, ⟨10.1111/mec.15611⟩ Article dans une revue hal-02925509v1
The contribution of ancient admixture to reproductive isolation between European sea bass lineages Maud Duranton,François Allal,Sophie Valière,Olivier Bouchez,François Bonhommeet al. Evolution Letters, 2020, 4 (3), pp.226-242. ⟨10.1002/evl3.169⟩ Article dans une revue hal-03065745v1
Genetic characterization of cupped oyster resources in Europe using informative single nucleotide polymorphism (SNP) panels Sylvie Lapègue,Serge Heurtebise,Florence Cornette,Erwan Guichoux,Pierre-Alexandre Gagnaire Genes, 2020, 11 (4), pp.1-17. ⟨10.3390/genes11040451⟩ Article dans une revue hal-03065752v1
Within-Generation Polygenic Selection Shapes Fitness-Related Traits across Environments in Juvenile Sea Bream Carine Rey,Audrey M. Darnaude,Franck Ferraton,Bruno Guinand,François Bonhommeet al. Genes, 2020, 11 (4), pp.398. ⟨10.3390/genes11040398⟩ Article dans une revue hal-02887670v1
Speciation history of European (Anguilla anguilla) and American eel (A. rostrata), analysed using genomic data Natacha Nikolic,Shenglin Liu,Magnus W Jacobsen,Bjarni Jónsson,Louis Bernatchezet al. Molecular Ecology, 2020, 29 (3), pp.565-577. ⟨10.1111/mec.15342⟩ Article dans une revue hal-03065758v1
Comparative genomics approach to evolutionary process connectivity Pierre-Alexandre Gagnaire Evolutionary Applications, 2020, 13 (6), pp.1320-1334. ⟨10.1111/eva.12978⟩ Article dans une revue hal-03065737v1
Development of a large SNPs resource and a low-density SNP array for brown trout (Salmo trutta) population genetics Keoni Saint-Pé,Maeva Leitwein,Laurence Tissot,Nicolas Poulet,Bruno Guinandet al. BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-5958-9⟩ Article dans une revue hal-02395980v1
Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages Florentine Riquet,Cathy Liautard‐haag,Lucy Woodall,Carmen Bouza,Patrick Louisyet al. Evolution - International Journal of Organic Evolution, 2019, 73 (4), pp.817-835. ⟨10.1111/evo.13696⟩ Article dans une revue hal-02395914v1
The European sea bass: a key marine fish model in the wild and in aquaculture Marc Vandeputte,P.-A. Gagnaire,F. Allal Animal Genetics, 2019, 50 (3), pp.195-206. ⟨10.1111/age.12779⟩ Article dans une revue hal-02395941v1
The spatial scale of dispersal revealed by admixture tracts Maud Duranton,François Bonhomme,Pierre-Alexandre Gagnaire Evolutionary Applications, 2019, 12 (9), pp.1743-1756. ⟨10.1111/eva.12829⟩ Article dans une revue hal-02395949v1
Model‐based demographic inference of introgression history in European whitefish species pairs Clément Rougeux,Pierre-Alexandre Gagnaire,Louis Bernatchez Journal of Evolutionary Biology, 2019, 32 (8), pp.806-817. ⟨10.1111/jeb.13482⟩ Article dans une revue hal-02395921v1
Using Haplotype Information for Conservation Genomics Maeva Leitwein,Maud Duranton,Quentin Rougemont,Pierre-Alexandre Gagnaire,Louis Bernatchez Trends in Ecology & Evolution, 2019, ⟨10.1016/j.tree.2019.10.012⟩ Article dans une revue hal-02395119v1
Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L. Sara Faggion,Marc Vandeputte,Béatrice Chatain,Pierre-Alexandre Gagnaire,François Allal Heredity, 2019, 122 (5), pp.612-621. ⟨10.1038/s41437-018-0157-z⟩ Article dans une revue hal-02395931v1
The role of recombination on genome‐wide patterns of local ancestry exemplified by supplemented brook charr populations Maeva Leitwein,Hugo Cayuela,Anne‐laure Ferchaud,Eric Normandeau,Pierre-Alexandre Gagnaireet al. Molecular Ecology, 2019, 28 (21), pp.4755-4769. ⟨10.1111/mec.15256⟩ Article dans une revue hal-02395970v1
Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex Clément Rougeux,Pierre-Alexandre Gagnaire,Kim Praebel,Ole Seehausen,Louis Bernatchez Molecular Ecology, 2019, 28 (19), pp.4388-4403. ⟨10.1111/mec.15226⟩ Article dans une revue hal-02395961v1
The origin and remolding of genomic islands of differentiation in the European sea bass Maud Duranton,François Allal,Christelle Fraïsse,Nicolas Bierne,François Bonhommeet al. Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-04963-6⟩ Article dans une revue hal-01825457v1
Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata Pierre-Alexandre Gagnaire,Jean-Baptiste Lamy,Florence Cornette,Serge Heurtebise,Lionel Degremontet al. Genome Biology and Evolution, 2018, 10 (9), pp.2518-2534. ⟨10.1093/gbe/evy194⟩ Article dans une revue hal-02395878v1
Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts Maeva Leitwein,Pierre-Alexandre Gagnaire,Erick Desmarais,Patrick Berrebi,Bruno Guinand Molecular Ecology, 2018, 27 (17), pp.3466 - 3483. ⟨10.1111/mec.14816⟩ Article dans une revue hal-01922616v1
Genomic and geographic footprints of differential introgression between two divergent fish species (Solea spp.) Ahmed Souissi,François Bonhomme,Manuel Manchado,Lilia Bahri-Sfar,Pierre-Alexandre Gagnaire Heredity, 2018, 121 (6), pp.579-593. ⟨10.1038/s41437-018-0079-9⟩ Article dans une revue hal-02395886v1
The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies Christelle Fraïsse,Camille Roux,Pierre-Alexandre Gagnaire,Jonathan Romiguier,Nicolas Faivreet al. PeerJ, 2018, 6, ⟨10.7717/peerj.5198⟩ Article dans une revue hal-01882981v1
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes Quentin Rougemont,Pierre-Alexandre Gagnaire,Charles Perrier,Clémence Genthon,Anne-Laure Besnardet al. Molecular Ecology, 2017, 26 (1), pp.142-162. ⟨10.1111/mec.13664⟩ Article dans une revue hal-01606314v1
Introgressive hybridization and morphological transgression in the contact zone between two Mediterranean Solea species Ahmed Souissi,Pierre-Alexandre Gagnaire,François Bonhomme,Lilia Bahri-Sfar Ecology and Evolution, 2017, 7 (5), pp.1394-1402. ⟨10.1002/ece3.2533⟩ Article dans une revue hal-02395842v1
A Dense Brown Trout ( Salmo trutta ) Linkage Map Reveals Recent Chromosomal Rearrangements in the Salmo Genus and the Impact of Selection on Linked Neutral Diversity Maeva Leitwein,Bruno Guinand,Juliette Pouzadoux,Erick Desmarais,Patrick Berrebiet al. G3, 2017, 7 (4), pp.1365 - 1376. ⟨10.1534/g3.116.038497⟩ Article dans une revue hal-01922619v1
Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis) Clément Rougeux,Louis Bernatchez,Pierre-Alexandre Gagnaire Genome Biology and Evolution, 2017, 9 (8), pp.2057-2074. ⟨10.1093/gbe/evx150⟩ Article dans une revue hal-02395854v1
RAD-Seq Reveals Patterns of Additive Polygenic Variation Caused by Spatially-Varying Selection in the American Eel (Anguilla rostrata) Charles Babin,Pierre-Alexandre Gagnaire,Scott Pavey,Louis Bernatchez Genome Biology and Evolution, 2017, 9 (11), pp.2974-2986. ⟨10.1093/gbe/evx226⟩ Article dans une revue hal-02395860v1
Parallel genetic divergence among coastal-marine ecotype pairs of European anchovy explained by differential introgression after secondary contact A. Le Moan,P.-A. Gagnaire,F. Bonhomme Molecular Ecology, 2016, 25 (13), pp.3187-3202. ⟨10.1111/mec.13627⟩ Article dans une revue istex hal-02395752v1
Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits M. Szulkin,P.-A. Gagnaire,N. Bierne,Anne Charmantier Molecular Ecology, 2016, 25 (2), pp.542-558. ⟨10.1111/mec.13486⟩ Article dans une revue hal-02326694v1
Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches Pierre-Alexandre Gagnaire,Oscar Gaggiotti Current zoology, 2016, 62 (6), pp.603-616. ⟨10.1093/cz/zow088⟩ Article dans une revue hal-02395790v1
Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations M. Leitwein,P. Gagnaire,E. Desmarais,S. Guendouz,Marine Rohmeret al. Journal of Fish Biology, 2016, 89 (6), pp.2717 - 2734. ⟨10.1111/jfb.13131⟩ Article dans une revue istex hal-01922655v1
Candidate gene variation in gilthead sea bream reveals complex spatiotemporal selection patterns between marine and lagoon habitats B. Guinand,C. Chauvel,M. Lechene,J. Tournois,C.S. Tsigenopouloset al. Marine Ecology Progress Series, 2016, 558, pp.115-127. ⟨10.3354/meps11851⟩ Article dans une revue hal-03046445v1
Biodiversity and distribution of leptocephali west of the Mascarene Plateau in the southwestern Indian Ocean Michael J. Miller,Éric Feunteun,Jun Aoyama,Shun Watanabe,Mari Kurokiet al. Progress in Oceanography, 2015, 137, pp.84-102. ⟨10.1016/j.pocean.2015.05.026⟩ Article dans une revue istex hal-01192848v1
RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish ( Coregonus clupeaformis ) Species Pairs Martin Laporte,Sean Rogers,Anne-Marie Dion-Côté,Eric Normandeau,Pierre-Alexandre Gagnaireet al. G3, 2015, 5 (7), pp.1481-1491. ⟨10.1534/g3.115.019067⟩ Article dans une revue hal-02395342v1
Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era Pierre-Alexandre Gagnaire,Thomas Broquet,Didier Aurelle,Frédérique Viard,Ahmed Souissiet al. Evolutionary Applications, 2015, 8 (8), pp.769-786. ⟨10.1111/eva.12288⟩ Article dans une revue hal-01187735v1
Do North Atlantic eels show parallel patterns of spatially varying selection? Malene G Ulrik,José Martín Pujolar,Anne-Laure Ferchaud,Magnus W Jacobsen,Thomas D Alset al. BMC Evolutionary Biology, 2014, 14 (1), pp.138. ⟨10.1186/1471-2148-14-138⟩ Article dans une revue hal-02395323v1
European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation Mbaye Tine,Heiner Kuhl,Pierre-Alexandre Gagnaire,Bruno Louro,Erick Desmaraiset al. Nature Communications, 2014, 5 (1), ⟨10.1038/ncomms6770⟩ Article dans une revue hal-01922671v1
Population genetics of the American eel ( Anguilla rostrata ): F ST = 0 and North Atlantic Oscillation effects on demographic fluctuations of a panmictic species Caroline Côté,Pierre-Alexandre Gagnaire,Vincent Bourret,Guy Verreault,Martin Castonguayet al. Molecular Ecology, 2013, 22 (7), pp.1763-1776. ⟨10.1111/mec.12142⟩ Article dans une revue hal-02395299v1
Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis) Pierre-Alexandre Gagnaire,Eric Normandeau,Scott Pavey,Louis Bernatchez Molecular Ecology, 2013, 22 (11), pp.3036-3048. ⟨10.1111/mec.12127⟩ Article dans une revue hal-02395307v1
The geography of introgression in a patchy environment and the thorn in the side of ecological speciation Nicolas Bierne,Pierre-Alexandre Gagnaire,Patrice David Current zoology, 2013, 59 (1), pp.72 - 86. ⟨10.1093/czoolo/59.1.72⟩ Article dans une revue hal-02395293v1
Nonparallelism in MHCIIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish ( Coregonus clupeaformis ) species pairs as revealed by next-generation sequencing Scott Pavey,Maelle Sevellec,William Adam,Eric Normandeau,Fabien Lamazeet al. Molecular Ecology, 2013, 22 (14), pp.3833-3849. ⟨10.1111/mec.12358⟩ Article dans une revue istex hal-02395312v1
THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING Pierre-Alexandre Gagnaire,Scott Pavey,Eric Normandeau,Louis Bernatchez Evolution - International Journal of Organic Evolution, 2013, 67 (9), pp.2483-2497. ⟨10.1111/evo.12075⟩ Article dans une revue istex hal-02395314v1
The Genetic Consequences of Spatially Varying Selection in the Panmictic American Eel ( Anguilla rostrata ) Pierre-Alexandre Gagnaire,Eric Normandeau,Caroline Côté,Michael Møller Hansen,Louis Bernatchez Genetics, 2012, 190 (2), pp.725-736. ⟨10.1534/genetics.111.134825⟩ Article dans une revue hal-02395275v1
Microsatellite length variation in candidate genes correlates with habitat in the gilthead sea bream Sparus aurata Lamya Chaoui,Pierre-Alexandre Gagnaire,Bruno Guinand,Jean-Pierre Quignard,Costas Tsigenopouloset al. Molecular Ecology, 2012, 21 (22), pp.5497 - 5511. ⟨10.1111/mec.12062⟩ Article dans une revue istex hal-01922723v1
Comparative Genomics Reveals Adaptive Protein Evolution and a Possible Cytonuclear Incompatibility between European and American Eels Pierre-Alexandre Gagnaire,Eric Normandeau,Louis Bernatchez Molecular Biology and Evolution, 2012, 29 (10), pp.2909-2919. ⟨10.1093/molbev/mss076⟩ Article dans une revue hal-02395279v1
RNA/DNA ratios in American glass eels ( Anguilla rostrata ): evidence for latitudinal variation in physiological status and constraints to oceanic migration? Simon Laflamme,Caroline Côté,Pierre-Alexandre Gagnaire,Martin Castonguay,Louis Bernatchez Ecology and Evolution, 2012, 2 (5), pp.875-884. ⟨10.1002/ece3.212⟩ Article dans une revue hal-02395286v1
Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor Yuki Minegishi,Pierre-Alexandre Gagnaire,Jun Aoyama,Pierre Bosc,Eric Feunteunet al. Journal of Biogeography, 2012, 39 (2), pp.408-420. ⟨10.1111/j.1365-2699.2011.02603.x⟩ Article dans une revue istex hal-02395267v1
WITHIN-POPULATION STRUCTURE HIGHLIGHTED BY DIFFERENTIAL INTROGRESSION ACROSS SEMIPERMEABLE BARRIERS TO GENE FLOW IN ANGUILLA MARMORATA Pierre-Alexandre Gagnaire,Yuki Minegishi,Saliha Zenboudji,Pierre Valade,Jun Aoyamaet al. Evolution - International Journal of Organic Evolution, 2011, 65 (12), pp.3413-3427. ⟨10.1111/j.1558-5646.2011.01404.x⟩ Article dans une revue hal-02395262v1
Multiplex PCR assay to discriminate four neighbouring species of the Calliptamus genus (Orthoptera: Acrididae) from France E. Blanchet,L. Blondin,Pierre-Alexandre Gagnaire,A. Foucart,J.M. Vassalet al. Bulletin of Entomological Research, 2010, 100 (6), pp.701-706. ⟨10.1017/S0007485310000052⟩ Article dans une revue istex hal-02395257v1
ASSESSMENT OF CRYPTIC SPECIES DIVERSITY WITHIN BLOOMS AND CYST BANK OF THE ALEXANDRIUM TAMARENSE COMPLEX (DINOPHYCEAE) IN A MEDITERRANEAN LAGOON FACILITATED BY SEMI-MULTIPLEX PCR Benjamin Genovesi,Mi-Sun Shin-Grzebyk,Daniel Grzebyk,Mohamed Laabir,Pierre-Alexandre Gagnaireet al. Journal of Plankton Research, 2010, ⟨10.1093/plankt/FBQ127⟩ Article dans une revue hal-00632294v1
Ocean currents drive secondary contact between Anguilla marmorata populations in the Indian Ocean Pierre-Alexandre Gagnaire,Y. Minegishi,J. Aoyama,Elodie Reveillac,Tony Robinetet al. Marine Ecology Progress Series, 2009, 379, pp.267-278. ⟨10.3354/meps07895⟩ Article dans une revue halsde-00372244v1
Development of a key using morphological characters to distinguish south-western Indian Ocean anguillid glass eels Elodie Reveillac,Pierre-Alexandre Gagnaire,Raymonde R. Lecomte-Finiger,Patrick Berrebi,Tony Robinetet al. Journal of Fish Biology, 2009, 74 (9), pp.2171-2177. ⟨10.1111/j.1095-8649.2009.02284.x⟩ Article dans une revue istex halsde-00420526v1
Natural selection influences AFLP intraspecific genetic variability and introgression patterns in Atlantic eels Pierre-Alexandre Gagnaire,V. Albert,B. Jónsson,Louis Bernatchez Molecular Ecology, 2009, 18 (8), pp.1678 - 1691. ⟨10.1111/j.1365-294X.2009.04142.x⟩ Article dans une revue istex halsde-00373273v1
Anguilla marmorata larval migration plasticity as revealed by otolith microstructural analysis Elodie Reveillac,Éric Feunteun,Patrick Berrebi,Pierre-Alexandre Gagnaire,Raymonde R. Lecomte-Finigeret al. Canadian Journal of Fisheries and Aquatic Sciences, 2008, 65 (10), pp.2127-2137. ⟨10.1139/F08-122⟩ Article dans une revue halsde-00367277v1
New clues for freshwater eels (Anguilla spp.) migration routes to eastern Madagascar and surrounding islands Tony Robinet,Elodie Réveillac,M. Kuroki,J. Aoyama,K. Tsukamotoet al. Marine Biology, 2008, 154, pp.453-463. ⟨10.1007/s00227-008-0938-7⟩ Article dans une revue istex halsde-00284449v1
Co-occurence of two Alexandrium species in Thau Lagoon Benjamin Genovesi,Estelle Masseret,M.S. Shin-Grzebyk,Daniel Grzebyk,Patrick Berrebiet al. Harmful Agae News An IOC Newsletter on toxic algae and algal blooms, 2008, 37, pp.1-2 Article dans une revue halsde-00451663v1
RFLP and semi-multiplex PCR-based identification of four eel species from the south-western Indian Ocean region Pierre-Alexandre Gagnaire,K. Tsukamoto,J. Aoyama,Y. Minegishi,P. Valadeet al. Journal of Fish Biology, 2007, 71 (Supplement B), pp.279-287. ⟨10.1111/j.1095-8649.2007.01605.x⟩ Article dans une revue istex halsde-00300254v1

Communication dans un congrès (12)

Population genomics support PRDM9-dependent recombination landscapes in salmonids Marie Raynaud,Pierre-Alexandre Gagnaire,Nicolas Galtier 3rd Joint Congress on Evolutionary Biology, Jul 2024, Montreal, Canada Communication dans un congrès hal-04785772v1
Capturing the diversity of population recombination landscapes in fish and insects Marie Raynaud,Pierre-Alexandre Gagnaire,Nicolas Galtier RecomBern, Sep 2024, Bern (CH), Switzerland Communication dans un congrès hal-04785738v1
Population genomics reveal PRDM9-dependent recombination landscapes in salmonids Marie Raynaud,Pierre-Alexandre Gagnaire,Nicolas Galtier GDR ALPHY / AIEM, Jan 2023, Grenoble, France Communication dans un congrès hal-04785784v1
Integrating recombination information into population genomics: why and how? Pierre-Alexandre Gagnaire XIII International symposium on Littorinid Biology and Evolution, Jul 2023, Vila do Conde, Portugal Communication dans un congrès hal-04780263v1
Using genome-wide ancestry pattern in European sea bass to assess phenotypic variation and ensure sustainable aquaculture Maeva Leitwein,Ghislain Durif,Pierre-Alexandre Gagnaire,Alain Vergnet,Frédéric Clotaet al. 6th Symposium on Genomics in Aquaculture, May 2022, Grenade, Spain Communication dans un congrès hal-04185352v1
Population-based recombination rates estimates to study genetic connectivity Marie Raynaud,Pierre-Alexandre Gagnaire,Nicolas Galtier International Conference on Marine Connectivity, Dec 2021, Paris, France Communication dans un congrès hal-04785796v1
Genome wide association studies revealed one strong effect QTL for viral nervous necrosis resistance in European sea bass (Dicentrarchus labrax) Ronan Griot,François Allal,Florence Phocas,Sophie Brard-Fudulea,Romain Morvezenet al. Aquaculture Europe 2020, Apr 2021, Cork, Ireland Communication dans un congrès hal-03198222v1
Genomically assisted reconstruction of the ancestral Dicentrarchus labrax L. Mediterranean lineage Sara Faggion,Duranton Maud,Pierre-Alexandre Gagnaire,Marc Vandeputte,François Allal Aquaculture Europe 2021, Oct 2021, Funchal, Portugal Communication dans un congrès hal-03360557v1
Genomically assisted reconstruction of the ancestral Dicentrarchus labrax Mediterranean lineage Sara Faggion,Maud Duranton,Pierre-Alexandre Gagnaire,Marc Vandeputte,François Allal 6th International Symposium Genomics in Aquaculture, Sep 2020, Granada, Spain Communication dans un congrès hal-03187502v1
Des puces pour prédire l’avenir… François Allal,Ronan Griot,Pierre-Alexandre Gagnaire,Romain Morvezen,Sophie Brardet al. Journées du SFAM (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2018, Montpelllier, France Communication dans un congrès hal-03156824v1
Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L. Sara Faggion,Marc Vandeputte,Béatrice Chatain,Pierre-Alexandre Gagnaire,François Allal AQUA 2018, Aug 2018, Montpellier, France Communication dans un congrès hal-03187154v1
GENESEA : développement de la sélection génomique chez le bar et la daurade François Allal,Ronan Griot,Pierre-Alexandre Gagnaire,Christophe Klopp,Aline Bajeket al. Journées Techniques du Sysaaf, Dec 2017, Rennes, France Communication dans un congrès hal-03156734v1

Poster de conférence (5)

Fine-scale recombination patterns in salmonid fishes support PRDM9-directed hotspot location Marie Raynaud,Pierre-Alexandre Gagnaire,Nicolas Galtier Congress of the Society for Molecular Biology and Evolution, Jul 2023, Ferrara, Italy Poster de conférence hal-04785826v1
Population genomics reveal PRDM9-dependent recombination landscapes in salmonids Marie Raynaud,Pierre-Alexandre Gagnaire,Nicolas Galtier Congress of the European Society for Evolutionary Biology, Aug 2022, Prague, Czech Republic Poster de conférence hal-04785845v1
Fast evolving recombination landscapes support a role of PRDM9 in directing hotspot location in Microvelia longipes genome Marie Raynaud,Pierre-Alexandre Gagnaire,Nicolas Galtier Petit Pois Déridé, May 2022, Lille, France Poster de conférence hal-04785866v1
Development and characterization of a 57K Single Nucleotide Polymorphism array for European sea bass François Allal,Maud Duranton,Romain Morvezen,Sophie Brard-Fudulea,Charles Poncetet al. AQUA 2018, Aug 2018, Montpellier, France Poster de conférence hal-03187160v1
Genetic parameters for growth and colour traits in Pacific blue shrimp Litopenaeus stylirostris in a mixed family design with SNP parentage assignement in New-Caledonia Florian Enez,Bénédicte Lorgeoux,Mahunon H,Jérôme Bugeon,Marc Vandeputteet al. 11. World Congress on Genetics Applied to Livestock Production, Feb 2018, Auckland, New Zealand Poster de conférence hal-03156790v1

Chapitre d'ouvrage (1)

Adaptation-adaptabilité : comprendre la réponse adaptative avec pour objectif de la prédire Nicolas Bierne,Malika Ainouche,M. Gouy,Pierre-Alexandre Gagnaire,Guillaume Mittaet al. Prospectives de l’Institut Ecologie et environnement du CNRS : compte-rendu des journées des 22, 23 et 24 février 2017, CNRS, Bordeaux, CNRS, pp.127-141, 2017, Les Cahiers Prospectives CNRS INEE Chapitre d'ouvrage hal-03132863v1

Pré-publication, Document de travail (7)

Sex chromosomes and chromosomal rearrangements are key to behavioural sexual isolation in Jaera albifrons marine isopods Ambre Ribardiere,Claire Daguin-Thiebaut,Jerome Coudret,Gildas Le Corguille,Komlan Aviaet al. 2025 Pré-publication, Document de travail hal-04923366v1
PRDM9 drives the location and rapid evolution of recombination hotspots in salmonids Marie Raynaud,Paola Sanna,Julien Joseph,Julie A. J. Clément,Yukiko Imaiet al. 2024 Pré-publication, Document de travail hal-04516336v1
Ecotype formation in the European anchovy fuelled by structural variants of different origins and genetic interactions with a southern lineage Laura Meyer,Pierre Barry,Christine Arbiol,Rita Castilho,Carl van der Lingenet al. 2019 Pré-publication, Document de travail hal-04792625v1
Divergence and gene flow history at two large chromosomal inversions involved in long-snouted seahorse ecotype formation Laura Meyer,Pierre Barry,Florentine Riquet,Andrew Foote,Clio Der Sarkissianet al. 2023 Pré-publication, Document de travail hal-04306022v1
Unidirectional trans-Atlantic gene flow and a mixed spawning area shape the genetic connectivity of Atlantic bluefin tuna Natalia Diaz-Arce,Pierre-Alexandre Gagnaire,David E Richardson,John Walter,Sophie Arnaud-Haondet al. 2023 Pré-publication, Document de travail (preprint/prepublication) hal-04307746v1
Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages Florentine Riquet,Cathy Liautard-Haag,Lucy Woodall,Carmen Bouza,Patrick Louisyet al. 2018 Pré-publication, Document de travail hal-01869948v1
Candidate gene variation in gilthead sea bream reveals complex spatiotemporal selection patterns between marine and lagoon habitats B Guinand,C Chauvel,M Lechene,J Tournois,Costas S Tsigenopouloset al. 2016 Pré-publication, Document de travail hal-01370327v1