Pierre Gladieux Directeur de recherche

Identifiants chercheurs

IdHAL :

pierre-gladieux

ORCID :

0000-0003-1929-1576

IdRef :

192426761

ResearcherID :

http://www.researcherid.com/rid/D-1014-2014

Publications

Article dans une revue (84)

Genomic organization, domain assortments, and nucleotide-binding domain diversity of NLR proteins in Sordariales fungi Lucas T. Bonometti,Florian Charriat,Noah Hensen,Silva Miñana-Posada,Hanna Johannessonet al. PLoS Genetics, 2025, 21 (7), pp.e1011739. ⟨10.1371/journal.pgen.1011739⟩ Article dans une revue hal-05352619v1
Diversity of Sordariales Fungi: Identification of Seven New Species of Naviculisporaceae Through Morphological Analyses and Genome Sequencing Narumon Tangthirasunun,Valérie Gautier,Christophe Lalanne,Lucas Bonometti,Sandrine Cros-Arteilet al. Journal of Fungi, 2025, 11 (12), pp.880. ⟨10.3390/jof11120880⟩ Article dans une revue hal-05418651v1
Pyricularia oryzae : Lab star and field scourge Maël Baudin,Marie Le Naour--Vernet,Pierre Gladieux,Didier Tharreau,Marc‐henri Lebrunet al. Molecular Plant Pathology, 2024, 25 (4), pp.e13449. ⟨10.1111/mpp.13449⟩ Article dans une revue hal-04554386v1
Extensive immune receptor repertoire diversity in disease-resistant rice landraces Pierre Gladieux,Cock van Oosterhout,Sebastian Fairhead,Agathe Jouet,Diana Ortizet al. Current Biology, 2024, 34, pp.3983-3995. ⟨10.1016/j.cub.2024.07.061⟩ Article dans une revue hal-04694233v1
The structural landscape and diversity of Pyricularia oryzae MAX effectors revisited Mounia Lahfa,Philippe Barthe,Karine de Guillen,Stella Cesari,Mouna Rajiet al. PLoS Pathogens, 2024, 20 (5), pp.e1012176. ⟨10.1371/journal.ppat.1012176⟩ Article dans une revue hal-04594277v1
Emergence and spread of the barley net blotch pathogen coincided with crop domestication and cultivation history Demetris Taliadoros,Alice Feurtey,Nathan Wyatt,Benoit Barrès,Pierre Gladieuxet al. PLoS Genetics, 2024, 20 (1), pp.e1010884. ⟨10.1371/journal.pgen.1010884⟩ Article dans une revue hal-04532805v1
Deep population structure linked to host vernalization requirement in the barley net blotch fungal pathogen Julie Ramírez Martínez,Sonia Guillou,Stéphanie Le Prieur,Pauline Di Vittorio,Florelle Bonalet al. Microbial Genomics, 2024, 10 (5), pp.001241. ⟨10.1099/mgen.0.001241⟩ Article dans une revue hal-04572543v1
Evolution of the rice blast pathogen on spatially structured rice landraces maintains multiple generalist fungal lineages Sajid Ali,Pierre Gladieux,Sebastien Ravel,Henri Adreit,Isabelle Meusnieret al. Molecular Ecology, 2023, 32 (10), pp.2519-2533. ⟨10.1111/mec.16927⟩ Article dans une revue hal-04084407v1
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales Noah Hensen,Lucas Bonometti,Ivar Westerberg,Ioana Onut Brännström,Sonia Guillouet al. Molecular Phylogenetics and Evolution, 2023, 189, pp.107938. ⟨10.1016/j.ympev.2023.107938⟩ Article dans une revue hal-04709225v1
Means, motive and opportunity for biological invasions: Genetic introgression in a fungal pathogen Flávia Rogério,Cock van Oosterhout,Maisa Ciampi‐guillardi,Fernando Henrique Correr,Guilherme Kenichi Hosakaet al. Molecular Ecology, 2023, 32 (10), pp.2428-2442. ⟨10.1111/mec.16366⟩ Article dans une revue hal-03583768v1
Adaptive evolution in virulence effectors of the rice blast fungus Pyricularia oryzae Marie Le Naour-Vernet,Florian Charriat,Jérôme Gracy,Sandrine Cros-Arteil,Sébastien Ravelet al. PLoS Pathogens, 2023, 19 (9), pp.e1011294. ⟨10.1371/journal.ppat.1011294⟩ Article dans une revue hal-04234581v1
Draft genome sequences of &lt;i&gt;Neurospora crassa&lt;/i&gt; clade B, isolated from burned &lt;i&gt;Cytisus&lt;/i&gt; sp. plants in France Lucas Bonometti,Fabien de Bellis,Sandrine Cros-Arteil,Elise Guéret,Pierre Gladieux Microbiology Resource Announcements, 2023, 12 (12), pp.e00627-23. ⟨10.1128/mra.00627-23⟩ Article dans une revue hal-04456049v1
Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores Nina Vittorelli,Ricardo Rodríguez de La Vega,Alodie Snirc,Emilie Levert,Valérie Gautieret al. PLoS Genetics, 2023, 19 (2), pp.e1010347. ⟨10.1371/journal.pgen.1010347⟩ Article dans une revue hal-04022779v1
Hybridizations between formae speciales of Venturia inaequalis pave the way for a new biocontrol strategy to manage fungal plant pathogens Valérie Caffier,Jason Shiller,Marie-Noëlle Bellanger,Jerome Collemare,Pascale Expertet al. Phytopathology, 2022, 112 (7), pp.1401-1405. ⟨10.1094/phyto-05-21-0222-sc⟩ Article dans une revue hal-03560861v1
Maintenance of divergent lineages of the Rice Blast Fungus Pyricularia oryzae through niche separation, loss of sex and post-mating genetic incompatibilities Maud Thierry,Florian Charriat,Joëlle Milazzo,Henri Adreit,Sébastien Ravelet al. PLoS Pathogens, 2022, 18, pp.e1010687. ⟨10.1371/journal.ppat.1010687⟩ Article dans une revue hal-03948351v1
Botrytis cinerea strains infecting grapevine and tomato display contrasted repertoires of accessory chromosomes, transposons and small RNAs Adeline Simon,Alex Mercier,Pierre P. Gladieux,Benoît Poinssot,Anne-Sophie Walkeret al. Peer Community Journal, 2022, 2, pp.e83. ⟨10.24072/pcjournal.211⟩ Article dans une revue hal-03910388v1
1H, 13C, 15 N backbone and side-chain NMR assignments for three MAX effectors from Magnaporthe oryzae Mounia Lahfa,André Padilla,Karine de Guillen,Joana Pissarra,Mouna Rajiet al. Biomolecular NMR Assignments, 2022, 16 (2), pp.305-309. ⟨10.1007/s12104-022-10095-2⟩ Article dans une revue hal-04234517v1
Tracing the Origin and Evolutionary History of Pyricularia oryzae Infecting Maize and Barnyard Grass Adel Pordel,Sebastien Ravel,Florian Charriat,Pierre P. Gladieux,Sandrine Cros-Arteilet al. Phytopathology, 2021, 111 (1), pp.128-136. ⟨10.1094/PHYTO-09-20-0423-R⟩ Article dans une revue hal-03468375v1
Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology Remco Stam,Pierre P. Gladieux,Boris Vinatzer,Erica Goss,Neha Potniset al. Phytopathology, 2021, 111 (1), pp.8-11. ⟨10.1094/PHYTO-11-20-0528-FI⟩ Article dans une revue hal-03152542v1
Population genomics reveals molecular determinants of specialization to tomato in the polyphagous fungal pathogen Botrytis cinerea in France Alex Mercier,Adeline Simon,Nicolas Lapalu,Tatiana E Giraud,Marc Bardinet al. Phytopathology, 2021, 111, pp.2355-2366. ⟨10.1094/PHYTO-07-20-0302-FI⟩ Article dans une revue hal-03197705v1
The taxonomy of the model filamentous fungus Podospora anserina S Lorena Ament-Velásquez,Hanna Johannesson,Tatiana E Giraud,Robert Debuchy,Sven J Saupeet al. MycoKeys, 2020, 75, pp.51-69. ⟨10.3897/mycokeys.75.55968⟩ Article dans une revue hal-03024403v1
Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system Pascal Alonso,Laurence Blondin,Pierre Gladieux,Frédéric Mahé,Hervé Sanguinet al. Environmental Microbiology, 2020, 22 (8), pp.3429-3445. ⟨10.1111/1462-2920.15114⟩ Article dans une revue hal-02907950v1
Higher gene flow in sex-related chromosomes than in autosomes 2 during fungal divergence Fanny E Hartmann,Ricardo Rodriguez de La Vega,Pierre Gladieux,Wen-Juan Ma,Michael E Hoodet al. Molecular Biology and Evolution, 2020, 37 (3), pp.668-682. ⟨10.1093/molbev/msz252⟩ Article dans une revue hal-02334226v2
A genomic approach to develop a new qPCR test enabling detection of the pyricularia oryzae lineage causing wheat blast Maud Thierry,Pierre Gladieux,Elisabeth Fournier,Didier Tharreau,Renaud Ioos Plant Disease, 2020, 104 (1), pp.60-70. ⟨10.1094/PDIS-04-19-0685-RE⟩ Article dans une revue hal-02622485v1
The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host-specialized and generalist populations Alex Mercier,Florence Carpentier,Clémentine Duplaix,Annie Auger,Jean-Marc Pradieret al. Environmental Microbiology, 2019, 21 (12), pp.4808-4821. ⟨10.1111/1462-2920.14829⟩ Article dans une revue hal-02618365v1
Pyricularia graminis-tritici is not the correct species name for the wheat blast fungus: response to Ceresini et al. (MPP 20:2) Barbara Valent,Mark Farman,Yukio Tosa,Dominik Begerow,Elisabeth Fournieret al. Molecular Plant Pathology, 2019, 20 (2), pp.173-179. ⟨10.1111/mpp.12778⟩ Article dans une revue hal-02622189v1
Emergence of Southern Rice Black-Streaked Dwarf Virus in the Centuries-Old Chinese Yuanyang Agrosystem of Rice Landraces Pascal Alonso,Pierre Gladieux,Oumaima Moubset,Pei-Jung Shih,Pierre Mournetet al. Viruses, 2019, 11 (11), pp.1-13. ⟨10.3390/v11110985⟩ Article dans une revue hal-02619099v1
Pyricularia oryzae : quelques précisions taxonomiques Didier Tharreau,Elisabeth Fournier,Pierre P. Gladieux,Marc-Henri Lebrun Phytoma la Défense des Végétaux, 2019, 723 Article dans une revue hal-02944071v1
Origin of the aromatic group of cultivated rice (Oryza sativa L.) traced to the Indian subcontinent Peter Civan,Sajid Ali,Riza Batista-Navarro,Konstantina Drosou,Chioma Ihejietoet al. Genome Biology and Evolution, 2019, 11 (3), pp.832-843. ⟨10.1093/gbe/evz039⟩ Article dans une revue hal-02627393v1
Programmed Cell Death in Neurospora crassa Is Controlled by the Allorecognition Determinant rcd-1 Asen Daskalov,Pierre Gladieux,Jens Heller,N. Louise Glass Genetics, 2019, 213 (4), pp.1387-1400. ⟨10.1534/genetics.119.302617⟩ Article dans une revue hal-02619094v1
Multiple Introductions Without Admixture of Colletotrichum truncatum Associated with Soybean Anthracnose in Brazil Flávia Rogério,Pierre Gladieux,Nelson Sidnei Massola,Maisa Ciampi-Guillardi Phytopathology, 2019, 109 (4), pp.681-689. ⟨10.1094/PHYTO-08-18-0321-R⟩ Article dans une revue hal-02627952v1
Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics Fanny E Hartmann,Ricardo Rodriguez de La Vega,Fantin E Carpentier,Pierre Gladieux,Amandine Cornilleet al. Annual Review of Phytopathology, 2019, 57, pp.431-457. ⟨10.1146/annurev-phyto-082718-095947⟩ Article dans une revue hal-02281429v1
NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi Jens Heller,Corinne Clavé,Pierre Gladieux,Sven J. Saupe,N. Louise Glass Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (10), pp.E2292-E2301. ⟨10.1073/pnas.1719705115⟩ Article dans une revue hal-02624524v1
What makes a specialized endophyte special? Pierre Gladieux Molecular Ecology, 2018, 27 (15), pp.3037-3039. ⟨10.1111/mec.14775⟩ Article dans une revue hal-02620792v1
Co-occurrence among three divergent plant-castrating fungi in the same Silene host species Jessica Lee Abbate,Pierre Gladieux,Michael E Hood,Damien de Vienne,Janis Antonovicset al. Molecular Ecology, 2018, 27 (16), pp.3357 - 3370. ⟨10.1111/mec.14805⟩ Article dans une revue hal-01921830v1
Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen Pierre Gladieux,Sébastien Ravel,Adrien Rieux,Sandrine Cros-Arteil,Henri Adreitet al. mBio, 2018, 9 (2), ⟨10.1128/mBio.01806-17⟩ Article dans une revue hal-02624365v1
Gene Flow between Divergent Cereal- and Grass-Specific Lineages of the Rice Blast Fungus Magnaporthe oryzae Pierre Gladieux,Bradford Condon,Sébastien Ravel,Darren Soanes,Joao Leodato Nunes Macielet al. mBio, 2018, 9 (1), ⟨10.1128/mBio.01219-17⟩ Article dans une revue hal-02625604v1
Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi Ning Zhang,Guohong Cai,Dana C. Price,Jo Anne Crouch,Pierre Gladieuxet al. Scientific Reports, 2018, 8, pp.1-13. ⟨10.1038/s41598-018-24301-6⟩ Article dans une revue hal-02621575v1
Updates in the Language of Histoplasma Biodiversity Pierre Gladieux mBio, 2018, 9 (3), ⟨10.1128/mBio.00181-18⟩ Article dans une revue hal-02619830v1
Sources of Fungal Genetic Variation and Associating It with Phenotypic Diversity J. W. Taylor,S. Branco,C. Gao,C. Hann-Soden,L. Montoyaet al. Microbiology Spectrum, 2017, 5 (5), pp.1-21. ⟨10.1128/microbiolspec.FUNK-0057-2016⟩ Article dans une revue hal-01608668v1
Genomic signatures of adaptation to wine biological aging conditions in biofilm-forming flor yeasts Anna Lisa Coi,Frederic Bigey,Sandrine Mallet,Souhir Marsit,G. Zaraet al. Molecular Ecology, 2017, 26 (7), pp.2150-2166. ⟨10.1111/mec.14053⟩ Article dans une revue hal-01608516v1
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes Sara Branco,Ke Bi,Hui-Ling Liao,Pierre Gladieux,Helene Badouinet al. Molecular Ecology, 2017, 26 (7), pp.2063-2076. ⟨10.1111/mec.13892⟩ Article dans une revue hal-02624420v1
Co-occurrence and hybridization of anther-smut pathogens specialized on Dianthus hosts Elsa Petit,Casey Silver,Amandine Cornille,Pierre Gladieux,Lisa Rosenthalet al. Molecular Ecology, 2017, 26 (7), pp.1877-1890. ⟨10.1111/mec.14073⟩ Article dans une revue hal-01605903v1
Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates Helene Badouin,Pierre Gladieux,Jerome Gouzy,Sophie Siguenza,Gabriela Aguiletaet al. Molecular Ecology, 2017, 26 (7), ⟨10.1111/mec.13976⟩ Article dans une revue hal-01448856v1
Distribution and population structure of the anther smut Microbotryum silenes-acaulis parasitizing an arctic-alpine plant Britta Bueker,Chris Eberlein,Pierre P. Gladieux,Angela Schaefer,Alodie Snircet al. Molecular Ecology, 2016, 25 (3), pp.811--824. ⟨10.1111/mec.13512⟩ Article dans une revue hal-01497390v1
Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies Jingjing Liao,Huichuan Huang,Isabelle Meusnier,Henri Adreit,Aurélie Ducasseet al. eLife, 2016, 5, pp.1-18. ⟨10.7554/eLife.19377⟩ Article dans une revue hal-01602225v1
Characterization of greenbeard genes Involved in long-distance kind discrimination in a microbial eukaryote Jens Heller,Jiuhai Zhao,Gabriel Rosenfield,David J. Kowbel,Pierre Gladieuxet al. PLoS Biology, 2016, 14 (4), pp.e1002431. ⟨10.1371/journal.pbio.1002431⟩ Article dans une revue hal-02638459v1
Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae M. Tofazzal Islam,Daniel Croll,Pierre Gladieux,Darren M. Soanes,Antoine Persoonset al. BMC Biology, 2016, 14, pp.1-11. ⟨10.1186/s12915-016-0309-7⟩ Article dans une revue hal-02638254v1
cloncase : Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms Sajid S. Ali,Samuel Soubeyrand,Pierre Gladieux,Tatiana Giraud,Marc Leconteet al. Molecular Ecology Resources, 2016, 16 (4), pp.845-861. ⟨10.1111/1755-0998.12511⟩ Article dans une revue istex hal-02328854v1
Strong phylogeographic costructure between the anther-smut fungus and its white campion host Alice Feurtey,Pierre Gladieux,Michael E. Hood,Alodie Snirc,Amandine Cornilleet al. New Phytologist, 2016, 3 (212), pp.668-679. ⟨10.1111/nph.14125⟩ Article dans une revue hal-01365319v1
Anthropogenic and natural drivers of gene flow in a temperate wild fruit tree: a basis for conservation and breeding programs in apples Amandine Cornille,Alice Feurtey,Uriel Gelin,Jeanne Ropars,Kristine Misvanderbruggeet al. Evolutionary Applications, 2015, 8 (4), pp.373-384. ⟨10.1111/eva.12250⟩ Article dans une revue hal-02328871v1
Degeneration of the Nonrecombining Regions in the Mating-Type Chromosomes of the Anther-Smut Fungi Eric Fontanillas,Michael E Hood,Hélène Badouin,Elsa Petit,Valérie Barbeet al. Molecular Biology and Evolution, 2015, 32 (4), pp.928-943. ⟨10.1093/molbev/msu396⟩ Article dans une revue hal-01302682v1
Identification of allorecognition loci in neurospora crassa by genomics and evolutionary approaches Jiuhai H. Zhao,Pierre Gladieux,Elisabeth Hutchison,Joanna Bueche,Charles Hallet al. Molecular Biology and Evolution, 2015, 32 (9), pp.2417-2432. ⟨10.1093/molbev/msv125⟩ Article dans une revue hal-02633307v1
Globally invading populations of the fungal plant pathogen Verticillium dahliae are dominated by multiple divergent lineages Dylan Pg Short,Suraj Gurung,Pierre Gladieux,Patrik Inderbitzin,Zahi K Atallahet al. Environmental Microbiology, 2015, 17 (8), pp.2824. ⟨10.1111/1462-2920.12789⟩ Article dans une revue istex hal-02631621v1
Genomic sequencing reveals historical, demographic and selective factors associated with the diversification of the fire-associated fungus Neurospora discreta Pierre Gladieux,Benjamin Wilson,Fanny Perraudeau,Liliam Montoya,David Kowbelet al. Molecular Ecology, 2015, 24 (22), pp.5657-5675. ⟨10.1111/mec.13417⟩ Article dans une revue hal-01303142v1
Emergence of new virulent populations of apple scab from nonagricultural disease reservoirs Christophe Lemaire,Marie de Gracia,Thibault Leroy,Monika Michalecka,Hanne Lindhard-Pedersenet al. New Phytologist, 2015, 209 (3), pp.1220-1229. ⟨10.1111/nph.13658⟩ Article dans une revue hal-01392705v1
Population structure and temporal maintenance of the multihost fungal pathogen Botrytis cinerea: causes and implications for disease management. Anne-Sophie Walker,Pierre Gladieux,Véronique Decognet,Marc Fermaud,Johann J. Confaiset al. Environmental Microbiology, 2015, 17 (4), pp.1261-1274. ⟨10.1111/1462-2920.12563⟩ Article dans une revue hal-02638009v1
Genetic isolation between two recently diverged populations of a symbiotic fungus Sara Branco,Pierre P. Gladieux,Christopher Ellison,Alan Kuo,Kurt Labuttiet al. Molecular Ecology, 2015, 24 (11), pp.2747-2758. ⟨10.1111/mec.13132⟩ Article dans une revue hal-01303143v1
The population biology of fungal invasions Pierre Gladieux,Alice Feurtey,Michael E. Hood,Alodie Snirc,Joanne Clavelet al. Molecular Ecology, 2015, 24 (9), pp.1969-1986. ⟨10.1111/mec.13028⟩ Article dans une revue istex hal-02328879v1
The domestication and evolutionary ecology of apples Amandine Cornille,Tatiana Giraud,Marinus J.M. Smulders,Isabel Roldán-Ruiz,Pierre Gladieux Trends in Genetics, 2014, 30 (2), pp.57-65. ⟨10.1016/j.tig.2013.10.002⟩ Article dans une revue hal-02328898v1
Inferring the contribution of sexual reproduction, migration and off-season survival to the temporal maintenance of microbial populations: a case study on the wheat fungal pathogen Puccinia striiformis f.sp. tritici Sajid S. Ali,Pierre P. Gladieux,Hidayatur Rahman,Saqib Muhammad,Ahmad Habibet al. Molecular Ecology, 2014, 23 (3), pp.603-617. ⟨10.1111/mec.12629⟩ Article dans une revue istex hal-01303146v1
Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes Pierre P. Gladieux,Jeanne Ropars,Helene Badouin,Antoine Branca,Gabriela G. Aguiletaet al. Molecular Ecology, 2014, 23 (4), pp.753-773. ⟨10.1111/mec.12631⟩ Article dans une revue hal-01302695v1
Origin, Migration Routes and Worldwide Population Genetic Structure of the Wheat Yellow Rust Pathogen Puccinia striiformis f.sp. tritici Sajid S. Ali,Pierre Gladieux,Marc Leconte,Angelique Gautier,A.F. Justesenet al. PLoS Pathogens, 2014, 10 (1), pp.003903. ⟨10.1371/journal.ppat.1003903⟩ Article dans une revue hal-01019256v1
A high virulence and pathotype diversity of Puccinia striiformis f.sp. tritici at its centre of diversity, the Himalayan region of Pakistan Sajid S. Ali,Marc M. Leconte,Hidayatur Rahman,Shahab Saqib,Pierre Gladieuxet al. European Journal of Plant Pathology, 2014, 140 (2), pp.275-290. ⟨10.1007/s10658-014-0461-2⟩ Article dans une revue hal-02640142v1
The ‘Dr Jekyll and Mr Hyde fungus’: noble rot versus gray mold symptoms of Botrytis cinerea on grapes Elisabeth Fournier,Pierre Gladieux,Tatiana Giraud Evolutionary Applications, 2013, 6 (6), pp.960-969. ⟨10.1111/eva.12079⟩ Article dans une revue hal-02328908v1
Crop-to-wild gene flow and spatial genetic structure in the closest wild relatives of the cultivated apple Amandine Cornille,Pierre Gladieux,Tatiana Giraud Evolutionary Applications, 2013, 6 (5), pp.737-748. ⟨10.1111/eva.12059⟩ Article dans une revue hal-02328919v1
Purifying selection after episodes of recurrent adaptive diversification in fungal pathogens Pierre Gladieux,Benjamin Devier,Gabriela Aguileta,Corinne Cruaud,Tatiana Giraud Infection, Genetics and Evolution, 2013, 17, pp.123-131. ⟨10.1016/j.meegid.2013.03.012⟩ Article dans une revue istex hal-02328913v1
Postglacial recolonization history of the European crabapple (Malus sylvestris Mill.), a wild contributor to the domesticated apple A. Cornille,T. Giraud,C. Bellard,A. Tellier,Bruno Le Camet al. Molecular Ecology, 2013, 22 (8), pp.2249 - 2263. ⟨10.1111/mec.12231⟩ Article dans une revue istex hal-01209911v1
History of the invasion of the anther smut pathogen on Silene latifolia in North America Michaël Fontaine,Pierre Gladieux,Michael E Hood,Tatiana Giraud New Phytologist, 2013, 198 (3), pp.946-956. ⟨10.1111/nph.12177⟩ Article dans une revue hal-02328942v1
Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans Azita A. Dilmaghani,P. P. Gladieux,Lilian L. Gout,Tatiana T. Giraud,P. P. Brunneret al. Molecular Ecology, 2012, 21 (10), pp.2519-2533. ⟨10.1111/j.1365-294X.2012.05535.x⟩ Article dans une revue hal-01000602v1
Evolution of pathogenicity traits in the apple scab fungal pathogen in response to the domestication of its host Amandine Le Van,Pierre Gladieux,Christophe Lemaire,Amandine Cornille,Tatiana Giraudet al. Evolutionary Applications, 2012, 5 (7), pp.694 - 704. ⟨10.1111/j.1752-4571.2012.00246.x⟩ Article dans une revue hal-01209918v1
New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties Amandine Cornille,Pierre Gladieux,Marinus J. M. Smulders,Isabel Roldan-Ruiz,Francois Laurenset al. PLoS Genetics, 2012, 8 (5), ⟨10.1371/journal.pgen.1002703⟩ Article dans une revue hal-01209929v1
Distinct invasion sources of common ragweed (Ambrosia artemisiifolia) in Eastern and Western Europe Pierre Gladieux,Tatiana Giraud,Levente Kiss,Benjamin Genton,Odile Jonotet al. Biological Invasions, 2011, 13 (4), pp.933-944. ⟨10.1007/s10530-010-9880-y⟩ Article dans une revue istex hal-02329038v1
Emergence of novel fungal pathogens by ecological speciation: importance of the reduced viability of immigrants Pierre Gladieux,Fabien Guérin,Tatiana Giraud,Valérie Caffier,Christophe Lemaireet al. Molecular Ecology, 2011, 20 (21), pp.4521-4532. ⟨10.1111/j.1365-294X.2011.05288.x⟩ Article dans une revue istex hal-02329021v1
The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication Constance Xhaard,Bénédicte Fabre,Axelle Andrieux,P. Gladieux,Benoît Barreset al. Molecular Ecology, 2011, 20 (13), pp.2739-2755. ⟨10.1111/j.1365-294X.2011.05138.x⟩ Article dans une revue hal-01136973v1
Maintenance of Fungal Pathogen Species That Are Specialized to Different Hosts: Allopatric Divergence and Introgression through Secondary Contact P. Gladieux,E. Vercken,M. Fontaine,M. Hood,O. Jonotet al. Molecular Biology and Evolution, 2010, 28 (1), pp.459-471. ⟨10.1093/molbev/msq235⟩ Article dans une revue hal-02333046v1
Host-specific differentiation among populations of Venturia inaequalis causing scab on apple, pyracantha and loquat. Pierre Gladieux,Valérie Caffier,Martine Devaux,Bruno Le Cam Fungal Genetics and Biology, 2010, 47 (6), pp.511-521. ⟨10.1016/j.fgb.2009.12.007⟩ Article dans une revue istex hal-02668199v1
Evolution of the population structure of Venturia inaequalis, the apple scab fungus, associated with the domestication of its host Pierre Gladieux,Xiu-Guo Zhang,Isabel Roldan-Ruiz,Valérie Caffier,Thibault Leroyet al. Molecular Ecology, 2010, 19 (4), pp.658-674. ⟨10.1111/j.1365-294X.2009.04498.x⟩ Article dans une revue istex hal-04331642v1
Glacial Refugia in Pathogens: European Genetic Structure of Anther Smut Pathogens on Silene latifolia and Silene dioica Elodie Vercken,Michaël Fontaine,Pierre Gladieux,Michael E Hood,Odile Jonotet al. PLoS Pathogens, 2010, 6 (12), pp.e1001229. ⟨10.1371/journal.ppat.1001229⟩ Article dans une revue hal-02333050v1
Distribution of the anther-smut pathogen Microbotryum on species of the Caryophyllaceae Michael E Hood,Jorge Mena-Alí,Amanda K Gibson,Bengt Oxelman,Tatiana Giraudet al. New Phytologist, 2010, 187 (1), pp.217-229. ⟨10.1111/j.1469-8137.2010.03268.x⟩ Article dans une revue hal-02333085v1
Genetic polymorphism of Microbotryum violaceum sl Isolates collected from different plant species on the territory of Russia Ar Karapetyan,Pierre Gladieux,Ia Zakharov Genetika / Russian Journal of Genetics, 2010, 46 (11), pp.1395-1398. ⟨10.1134/S1022795410110165⟩ Article dans une revue istex hal-02657820v1
Linking the emergence of fungal plant diseases with ecological speciation Tatiana Giraud,Pierre Gladieux,Sergey Gavrilets Trends in Ecology & Evolution, 2010, 25 (7), pp.387-395. ⟨10.1016/j.tree.2010.03.006⟩ Article dans une revue hal-02333057v1
On the Origin and Spread of the Scab Disease of Apple: Out of Central Asia Pierre Gladieux,Xiu-Guo Zhang,Damien Afoufa-Bastien,Rosa-Maria Valdebenito Sanhueza,Mohamed Sbaghiet al. PLoS ONE, 2008, 3 (1), pp.e1455. ⟨10.1371/journal.pone.0001455⟩ Article dans une revue hal-02669128v1
Origin and colonization history of newly virulent strains of the phytopathogenic fungus Venturia inaequalis Fabien Guérin,Pierre Gladieux,Bruno Le Cam Fungal Genetics and Biology, 2007, 44 (4), pp.284-292. ⟨10.1016/j.fgb.2006.10.005⟩ Article dans une revue istex hal-02661237v1

Poster de conférence (10)

GrAuFlow: A snakemake workflow for pangenome graph augmentation using short read data Antoine Malet,Fabrice Legeai,Ludovic Duvaux,Elisabeth Fournier,Pierre Gladieuxet al. Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM2025), Jul 2025, Bordeaux, France Poster de conférence hal-05209521v1
Establishment of pangenome graphs for the analysis and monitoring of fungal plant pathogen populations Nicolas Lapalu,Antoine Loth,Fabrice Legeai,Ludovic Duvaux,Elisabeth Fournieret al. ISCLB 2024 International Symposium on Cereal Leaf Blights, Jun 2024, Zürich, Switzerland. ⟨10.15454/1.5572369328961167E12⟩ Poster de conférence hal-04623680v1
Could small interfering RNA be involved in host specialization in the grey mould fungus Botrytis cinerea? Adeline Simon,Alex Mercier,Guillaume Morgant,Pierre Gladieux,Anne-Sophie Walkeret al. ECFG15 European conference on fungal genetics, Feb 2020, Roma, Italy. p.310 Poster de conférence hal-04275453v1
Population structure and host specialization in Botrytis cinerea Alex Mercier,Marguerite Cuel,Jean-Marc Pradier,Adeline Simon,Muriel Viaudet al. 30. Fungal Genetics Conference, Mar 2019, Asilomar, United States. , 2019 Poster de conférence hal-02786283v1
Population structure and host specialization in Botrytis cinerea Anne-Sophie Walker,Alex Mercier,Marguerite Cuel,Jean-Marc Pradier,Adeline Simonet al. 10. French Society for Plant Pathology (SFP), May 2017, Dunkerque, Malo-les-Bains, France. , 236 p., 2017, Deepen Knowledge in Plant Pathology for Innovative Agro-Ecology : Book of Abstracts Poster de conférence hal-01603401v1
Genomic study shows endemic and pandemic rice blast lineages and lineages between rice and setaria infecting gene pools Maud Thierry,Adrien Rieux,Sébastien Ravel,Sandrine Cros-Arteil,Henri Adreitet al. 10. French Society for Plant Pathology (SFP), May 2017, Dunkerque, Malo-les-Bains, France. , 236 p., 2017, Deepen Knowledge in Plant Pathology for Innovative Agro-Ecology : Book of Abstracts Poster de conférence hal-01606836v1
Population structure and host specialization in Botrytis cinerea Anne-Sophie Walker,A. Mercier,M. Cuel,Jean Marc Pradier,Adeline Simonet al. 10th French society for plant pathology conference, May 2017, Dunkerque, France. Poster de conférence hal-04289673v1
Population structure and host specialization in Botrytis cinerea Anne-Sophie Walker,Alex Mercier,Marguerite Cuel,Jean-Marc Pradier,Adeline Simonet al. 17. International Botrytis Symposium, Oct 2016, Santa-Cruz, Chile. , 178 p., 2016, Abstract book : XVII International Botrytis Symposium Poster de conférence hal-01532611v1
Population structure and temporal maintenance of Puccinia striiformis in the Himalayan region of Pakistan Sajid S. Ali,Pierre Gladieux,Hidayatur Rahman,Shahab Saqib,Muhammad Fiazet al. Disease risk and food security. Proceedings of the 13th International cereal rusts and powdery mildews conference,, Aug 2012, Beijing, China. Wan-Quan CHEN, 2012, Session 2. population genetics and pathogen diversity Poster de conférence hal-01191240v1
Worldwide population genetic analyses suggests Himalaya as a centre of diversity for Puccinia striiformis f.sp. with high sex ability and temperature adaptation Sajid S. Ali,Jerome Enjalbert,P. Gladieux,Marc Leconte,Angelique Gautieret al. 8° Colloque de la Société Française de Phytopathologie (SFP), Jun 2012, Paris, France. , 2012, Session Posters Ecologie évolutive du parasitisme et de la symbiose - biologie et génétique des populations de bioagresseurs et des symbiotes Poster de conférence hal-01191173v1

Pré-publication, Document de travail (8)

The structural landscape and diversity of Pyricularia oryzae MAX effectors revisited Mounia Lahfa,Philippe Barthe,Karine De Guillen,Stella Cesari,Mouna Rajiet al. 2023 Pré-publication, Document de travail hal-04236508v1
Adaptive evolution in virulence effectors of the rice blast fungus Pyricularia oryzae Marie Le Naour-Vernet,Florian Charriat,Jérôme Gracy,Sandrine Cros-Arteil,Sébastien Ravelet al. 2024 Pré-publication, Document de travail (preprint/prepublication) hal-04709363v1
Stepwise recombination suppression around the mating-type locus in the fungus Schizothecium tetrasporum (Ascomycota, Sordariales) Nina Vittorelli,Alodie Snirc,Emilie Levert,Valérie Gautier,Christophe Lalanneet al. 2022 Pré-publication, Document de travail (preprint/prepublication) hal-03812349v1
Ecological Differentiation and Incipient Speciation in the Fungal Pathogen Causing Rice Blast Maud Thierry,Joëlle Milazzo,Henri Adreit,Sébastien Ravel,Sonia Borronet al. 2020 Pré-publication, Document de travail (preprint/prepublication) hal-02944041v1
The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host-specialized and generalist populations Alex Mercier,Florence Carpentier,Clémentine Duplaix,Annie Auger,Jean-Marc Pradieret al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02944047v1
Gene flow between divergent cereal‐ and grass-specific lineages of the rice blast fungus Magnaporthe oryzae Pierre P. Gladieux,Bradford Condon,Sebastien Ravel,Darren Soanes,Joao Leodato Nunes Macielet al. 2020 Pré-publication, Document de travail (preprint/prepublication) hal-02944056v1
Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen Pierre P. Gladieux,Sébastien Ravel,Adrien Rieux,Sandrine Cros-Arteil,Henri Adreitet al. 2020 Pré-publication, Document de travail (preprint/prepublication) hal-02944054v1
Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae Tofazzal Islam,Daniel Croll,Pierre P. Gladieux,Darren Soanes,Antoine Persoonset al. 2016 Pré-publication, Document de travail hal-02944058v1

Communication dans un congrès (18)

Structure determination and ab initio prediction provide new insights into the diversity of Magnaporthe oryzae MAX effectors Mounia Lahfa,Karine de Guillen,Nathalie Declerck,Phillipe Barthe,Jérôme Gracyet al. 14. European Biophysics Congress (EBSA), Jul 2023, Stockholm, Sweden Communication dans un congrès hal-05162321v1
Botrytis cinerea strains infecting grapevine and tomato display contrasted repertoires of accessory chromosomes, transposons and small RNAs Adeline Simon,Alex Mercier,Pierre P. Gladieux,Benoit Poinssot,Anne-Sophie Walkeret al. 1. Joint Botrytis-Sclerotinia Symposium, Jul 2022, Avignon, France Communication dans un congrès hal-04084480v1
Eternal Rice: a case study of sustainable management of plant resistance H. Huang,J. Liao,Isabelle Meusnier,Didier Tharreau,Henri Adreitet al. 18th Ecology and Evolution of Infectious Diseases meeting, Jun 2021, Montpellier, France Communication dans un congrès hal-04481342v1
Exploring NLR diversity in Oryza sativa S. Fairhead,Thomas Kroj,Pierre Gladieux,A. Jouet,K. Witeket al. 18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom Communication dans un congrès hal-02734788v1
Disease Emergence and Fungal Speciation Pierre Gladieux Séminaires du WSL, Institut Fédéral de Recherches sur la Forêt, la Neige et le Paysage WSL. CHE., 2019, Birmensdorf, Switzerland Communication dans un congrès hal-02786338v1
Emergence and spread of the multihost pathogen Pyricularia oryzae Pierre Gladieux Fungal Ecology And Evolution, Max-Planck-Institut. DEU., Mar 2018, Plön, Germany Communication dans un congrès hal-02786565v1
Population structure and host specialization in Botrytis cinerea Alex Mercier,Adeline Simon,Clémentine Duplaix,Marguerite Cuel,Jean-Marc Pradieret al. 12. Journées Jean Chevauchon JJC2018 - Rencontres de Phytopathologie & Mycologie, Jan 2018, Aussois, France. p.19 Communication dans un congrès hal-02785894v1
Disease Emergence and Fungal Speciation Pierre Gladieux Séminaires du Centre for Ecological and Evolutionary Synthesis, Centre for Ecological and Evolutionary Synthesis (CEES). Oslo., 2018, Oslo, Norway Communication dans un congrès hal-02785216v1
Disease Emergence and Fungal Speciation Pierre Gladieux Séminaires du département de Génétique de l'Université de Neuchatel, Université de Neuchâtel (UNINE). Neuchâtel, CHE., 2018, Neuchatel, Switzerland Communication dans un congrès hal-02785215v1
Genomic analysis reveals multiple endemic and pandemic lineages of rice blast and gene flow into recombining populations from southeast continental Asia Pierre Gladieux,Maud Thierry,Adrien Rieux,Sébastien Ravel,Sandrine Cros-Arteilet al. 29. Fungal Genetics Conference, Genetics Society of America (GSA). USA., Mar 2017, Asilomar, United States. 290 p Communication dans un congrès hal-02733567v1
Multiple endemic and pandemic lineages of the rice blast pathogen and gene flow into recombining populations from Southeast continental Asia Pierre Gladieux,Maud Thierry,Adrien Rieux,Sébastien Ravel,Sandrine Cros-Arteilet al. International Workshop on organic nitrogen and plant nutrition (OrgN2020), May 2017, Ascona, Switzerland Communication dans un congrès hal-02785211v1
Population genomics of pandemic and endemic rice-infecting lineages of Magnaporthe oryzae Pierre Gladieux,Sébastien Ravel,Adrien Rieux,Elisabeth Fournier,Didier Tharreau 13. European Conference on Fungal Genetics (ECFG13), Apr 2016, Paris, France. 620 p Communication dans un congrès hal-02739165v1
Genomic Sequencing Reveals Demographic, Historical, and Selective Factors Associated with the Diversification of the Fire-Associated Fungus Neurospora discreta Pierre Gladieux,Ben Wilson,Fanny Perraudeau,Liliam A Montoya,David Kowbelet al. 15. workshop of the COST Action SUSTAIN on Evolutionary genomics of plant pathogens, Aug 2015, Kiel, Germany. 79 p Communication dans un congrès hal-02741270v1
Inferring the origin and trajectories of recent invasions of wheat yellow rust strains from worldwide population structrure Sajid S. Ali,Jerome J. Enjalbert,Pierre P. Gladieux,Mogens Støvring M. S. Hovmøller,Claude C. Pope de Vallavieille Borlaug Global Rust Initiative (BGRI) Technical Workshop, Aug 2013, New-Delhi, India Communication dans un congrès hal-01004260v1
When Resistance genes introgressed in agrosystems act as gateways for virulent populations from the wild: the apple scab case study Christophe Lemaire,Thibault Leroy,Pierre Gladieux,Marie de Gracia,Fabien Guérinet al. Plant Resistance Sustainability International Conference, 2012, La Colle sur Loup, France Communication dans un congrès hal-03284033v1
Magic traits drive the emergence of pathogens Pierre Gladieux,Fabien Guérin,Tatiana Giraud,Valérie Caffier,Christophe Lemaireet al. 26th Fungal Genetics Conference, 2011, Asilomar, United States Communication dans un congrès hal-03284030v1
Worldwide spread and evolution of pathogenicity traits of the apple scab fungus Venturia inaequalis associated with the domestication of its host Bruno Le Cam,Pierre Gladieux,Amandine Lê Van,Charles-Eric Durel,Thibault Leroyet al. Cycle de division : dans le temps et l’espace - Conférences Jacques Monod, 2010, Roscoff, France Communication dans un congrès hal-03284024v1
Origine de la tavelure du pommier et changements évolutifs liés à la domestication de son hôte Amandine Le Van,Pierre Gladieux,Valérie Caffier,Charles Eric Durel,Bruno Le Cam 7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon, France. 1 p Communication dans un congrès hal-02819227v1

Chapitre d'ouvrage (3)

Chapter 13 - Neurospora from Natural Populations: Population Genomics Insights into the Life History of a Model Microbial Eukaryote Pierre Gladieux,Fabien de Bellis,Christopher Hann-Soden,Jesper Svedberg,Hanna Johannessonet al. Julien Y. Dutheil. Statistical Population Genomics, 2090, Springer Nature; Springer Protocols; Humana Press, pp.313-336, 2020, Methods in Molecular Biology, 978-1-0716-0198-3. ⟨10.1007/978-1-0716-0199-0_13⟩ Chapitre d'ouvrage hal-02281657v2
Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics Fanny E. Hartmann,Ricardo C. Rodriguez de La Vega,Fantin Carpentier,Pierre Gladieux,Amandine Cornilleet al. Annual Review of Phytopathology, 57, Annual Reviews, 529 p., 2019, Annual Review of Phytopathology, 978-0-8243-1357-9. ⟨10.1146/annurev-phyto-082718095947⟩ Chapitre d'ouvrage hal-02791443v1
Epidemiology and Evolution of Fungal Pathogens in Plants and Animals Pierre Gladieux,Edmond Byrnes,Gabriela Aguileta,Matthew C. Fisher,Joseph Heitmanet al. Genetics and Evolution of Infectious Disease, Elsevier, pp.59-132, 2011, 978-0-12-384891-8. ⟨10.1016/B978-0-12-384890-1.00004-2⟩ Chapitre d'ouvrage hal-02333038v1

Thèse (1)

Biogéographie et biologie des populations de venturia inaequalis, champignon invasif responsable de la tavelure du pommier Pierre Gladieux Sciences agricoles. Université d'Angers (UA), FRA., 2007. Français. ⟨NNT : ⟩ Thèse tel-03475695v1