Pierre Larmande Senior Researcher, DR2, at the French National Institute of Research for Sustainable Development (IRD)

Identifiants chercheurs

IdHAL :

pierre-larmande

ORCID :

0000-0002-2923-9790

IdRef :

122767802

ResearcherID :

http://www.researcherid.com/rid/F-2144-2016

Présentation

My research aims to model the complexity of biological data in order to extract knowledge that can be used to identify the molecular mechanisms controlling the expression of phenotypes in plants in a context of environmental adaptation. I am particularly interested in tropical cereals (Asian and African rice, millet, sorghum).My main research interests are Data integration, Semantic Web, plant-ontologies, semantic data linking, Knowledge management and Big Data for plant genomics.I am is the lead PI of the Agronomic Linked Data project (AgroLD), which is a Knowledge Graph database that consists of data integrated from a variety of plant resources and ontologies. For more info visit my homepage

Publications

Article dans une revue (27)

AgroLD: a knowledge graph for the plant sciences Pierre Larmande,Bertrand Pittolat,Ndomassi Tando,Yann Pomie,Bill Gates Happi Happiet al. BMC Genomic Data, 2025, 26 (Supplement 1), pp.73. ⟨10.1186/s12863-025-01359-6⟩ Article dans une revue hal-05501420v1
Analysis of the Performance of Representation Learning Methods for Entity Alignment: Benchmark Versus Real-World Data Ensiyeh Raoufi,Bill Gates Happi Happi,Pierre Larmande,François Scharffe,Konstantin Todorov Semantic Web – Interoperability, Usability, Applicability, 2025, 17 (1), ⟨10.1177/09217134251389825⟩ Article dans une revue hal-05447876v1
GRU-SCANET: unleashing the power of GRU-based sinusoidal capture network for precision-driven named entity recognition Bill Gates Happi Happi,Geraud Fokou Pelap,Danai Symeonidou,Pierre Larmande Bioinformatics Advances, 2025, 5 (1), pp.vbaf096. ⟨10.1093/bioadv/vbaf096⟩ Article dans une revue hal-05158470v1
A Unified approach to publish semantic annotations of agricultural documents as knowledge graphs Nadia Yacoubi Ayadi,Stephan Bernard,Robert Bossy,Marine Courtin,Bill Gates Happi Happiet al. Smart Agricultural Technology, 2024, 8, pp.43. ⟨10.1016/j.atech.2024.100484⟩ Article dans une revue hal-04495022v1
PyRice: a Python package for querying Oryza sativa databases Quan Do,Ho Bich Hai,Pierre Larmande Bioinformatics, 2021, 37 (7), pp.1037-1038. ⟨10.1093/bioinformatics/btaa694⟩ Article dans une revue lirmm-03615370v1
OryzaGP 2021 update: a rice gene and protein dataset for named-entity recognition Pierre Larmande,Yusha Liu,Xinzhi Yao,Jingbo Xia Genomics & Informatics, 2021, 19 (3), pp.e27. ⟨10.5808/gi.21015⟩ Article dans une revue lirmm-03615366v1
COMOKIT: A Modeling Kit to Understand, Analyze, and Compare the Impacts of Mitigation Policies Against the COVID-19 Epidemic at the Scale of a City Benoit Gaudou,Nghi Quang Huynh,Damien Philippon,Arthur Brugière,Kevin Chapuiset al. Frontiers in Public Health, 2020, 8, pp.563247. ⟨10.3389/fpubh.2020.563247⟩ Article dans une revue (article de synthèse) hal-02968260v1
Enabling a fast annotation process with the Table2Annotation tool Pierre Larmande,Kazim Muhammed Jibril Genomics & Informatics, 2020, 18 (2), pp.e19. ⟨10.5808/GI.2020.18.2.e19⟩ Article dans une revue lirmm-03615375v1
Corrigendum to: Rice Galaxy: an open resource for plant science Venice Juanillas,Alexis Dereeper,Nicolas Beaume,Gaetan Droc,Joshua Dizonet al. GigaScience, 2019, 8 (12), ⟨10.1093/gigascience/giz156⟩ Article dans une revue lirmm-03615381v1
Progress in single-access information systems for wheat and rice crop improvement Armin Scheben,Chon-Kit Kenneth Chan,Locedie Mansueto,Ramil Mauleon,Pierre Larmandeet al. Briefings in Bioinformatics, 2019, 20 (2), pp.565-571. ⟨10.1093/bib/bby016⟩ Article dans une revue hal-02962718v1
Gigwa v2-Extended and improved genotype investigator Guilhem Sempere,Adrien Petel,Mathieu Rouard,Julien Frouin,Yann Hueberet al. GigaScience, 2019, 8 (5), ⟨10.1093/gigascience/giz051⟩ Article dans une revue hal-02627410v1
OryzaGP: rice gene and protein dataset for named-entity recognition Pierre Larmande,Huy Do,Yue Wang Genomics & Informatics, 2019, 17 (2), pp.e17. ⟨10.5808/GI.2019.17.2.e17⟩ Article dans une revue lirmm-03615384v2
BrAPI - an Application Programming Interface for Plant Breeding Applications. Rafael Abbeloos,Jan Erik Backlund,Martin Basterrechea Salido,Guillaume Bauchet,Omar Benites-Alfaroet al. Bioinformatics, 2019, 35 (20), pp.4147-4155. ⟨10.1093/bioinformatics/btz190⟩ Article dans une revue hal-02626802v1
The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes Philippe Cubry,Christine Tranchant-Dubreuil,Anne-Céline Thuillet,Cécile Monat,Marie-Noelle Ndjiondjopet al. Current Biology, 2018, 28 (14), pp.2274-2282. e6. ⟨10.1016/j.cub.2018.05.066⟩ Article dans une revue hal-03958213v1
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy Aravind Venkatesan,Gildas Tagny Ngompe,Nordine El Hassouni,Imène Chentli,Valentin Guignonet al. PLoS ONE, 2018, 13 (11), pp.e0198270. ⟨10.1371/journal.pone.0198270⟩ Article dans une revue lirmm-01964772v1
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture Lisa Harper,Jacqueline Campbell,Ethalinda K S Cannon,Sook Jung,Monica Poelchauet al. Database -Weston-, 2018, 2018, pp.#bay088. ⟨10.1093/database/bay088⟩ Article dans une revue lirmm-01964769v1
AgroPortal: A vocabulary and ontology repository for agronomy Clement Jonquet,Anne Toulet,Elizabeth Arnaud,Sophie Aubin,Esther Dzale Yeumoet al. Computers and Electronics in Agriculture, 2018, 144, pp.126-143. ⟨10.1016/j.compag.2017.10.012⟩ Article dans une revue lirmm-01679502v1
Developing data interoperability using standards: A wheat community use case Esther Dzale Yeumo,Michaël Alaux,Elizabeth Arnaud,Sophie Aubin,Ute Baumannet al. F1000Research, 2017, 6 (1843), pp.1843. ⟨10.12688/f1000research.12234.1⟩ Article dans une revue lirmm-01652022v2
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities Sarah Cohen-Boulakia,Khalid Belhajjame,Olivier Collin,Jérôme Chopard,Christine Froidevauxet al. Future Generation Computer Systems, 2017, 75, pp.284-298. ⟨10.1016/j.future.2017.01.012⟩ Article dans une revue hal-01516082v1
AgroLD API. Une architecture orientée services pour l'extraction de connaissances dans la base de données liées AgroLD Gildas Tagny Ngompe,Aravind Venkatesan,Nordine El Hassouni,Manuel Ruiz,Pierre Larmande Revue des Sciences et Technologies de l'Information - Série ISI : Ingénierie des Systèmes d'Information, 2016, 21 (5-6), pp.133-158. ⟨10.3166/isi.21.5-6.133-157⟩ Article dans une revue hal-01411532v1
Gigwa—Genotype investigator for genome- wide analyses Guilhem Sempéré,Florian Philippe,Alexis Dereeper,Manuel Ruiz,Gautier Sarahet al. GigaScience, 2016, 5 (1), pp.1-9. ⟨10.1186/s13742-016-0131-8⟩ Article dans une revue hal-01411506v1
The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics Valentin Guignon,Yann Hueber,Mathieu Rouard,Stéphanie Bocs,David Couvinet al. Current Plant Biology, 2016, 7-8, pp.6-9. ⟨10.1016/j.cpb.2016.12.002⟩ Article dans une revue hal-02631148v1
Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases Julien Wollbrett,Pierre Larmande,Frédéric F. de Lamotte,Manuel Ruiz BMC Bioinformatics, 2013, 14, ⟨10.1186/1471-2105-14-126⟩ Article dans une revue hal-01268129v1
In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches. Mathias Lorieux,Mélisande Blein,Jaime Lozano,Mathieu Bouniol,Gaétan Drocet al. Plant Biotechnology Journal, 2012, 10 (5), pp.555-68. ⟨10.1111/j.1467-7652.2012.00689.x⟩ Article dans une revue istex hal-00821958v1
OryGenesDB 2008 update: a database interoperability for functional genomics of rice. Gaëtan Droc,Christophe Périn,Sebastien Fromentin,Pierre Larmande Nucleic Acids Research, 2009, 37 (Database issue), pp.D992-D995. ⟨10.1093/nar/gkn821⟩ Article dans une revue hal-01218997v1
Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library Pierre Larmande,Céline Gay,Mathias Lorieux,Christophe Périn,Matthieu Bouniolet al. Nucleic Acids Research, 2008, 36 (Database issue), pp.D1022-7. ⟨10.1093/nar/gkm762⟩ Article dans une revue hal-00464031v1
OryGenesDB: a database for rice reverse genetics Gaëtan Droc,Manuel Ruiz,Pierre Larmande,Andy Pereira,Pietro Piffanelliet al. Nucleic Acids Research, 2006, 34, pp.D736-D740. ⟨10.1093/nar/gkj012⟩ Article dans une revue hal-01218996v1

Communication dans un congrès (26)

AgroLD: a Knowledge Graph for the Plant Sciences Pierre Larmande,Bertrand Pitollat,Ndomassi Tando,Yann Pomie,Bill Happiet al. 16th Semantic Web Applications and Tools for Health Care and Life Science (SWAT4HCLS), Andra Waagmeester; Andrea Splendiani; M. Scott Marshall, Feb 2025, Barcelone, Spain Communication dans un congrès ird-04932817v1
Graph Embeddings Meet Link Keys Discovery for Entity Matching Chloé Khadija Jradeh,Ensiyeh Raoufi,Jérôme David,Pierre Larmande,François Scharffeet al. WWW '25: The ACM Web Conference 2025, Apr 2025, Sydney NSW Australia, Australia. pp.3344-3353, ⟨10.1145/3696410.3714581⟩ Communication dans un congrès hal-04920958v1
Evaluating deep learning models for plant protein function prediction Minh Ngoc Vu,Ha Hoang,Antoine Toffano,Pierre Larmande JOBIM 2025 - 25es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France Communication dans un congrès ird-05194043v1
The Wheat and Rice Genomics Scientific Literature Knowledge Graphs Nadia Yacoubi Ayadi,Franck Michel,Robert Bossy,Marine Courtin,Bill Gates Happi Happiet al. Semantic Web Technologies for Health Care and Life Science (SWAT4HCLS), Andra Waagmeester; M. Scott Marshall; Andrea Splendiani, Feb 2025, Barcelone, Spain Communication dans un congrès ird-04932752v1
AgroLD: a Knowledge Graph for the Plant Sciences Pierre Larmande,Bertrand Pitollat,Ndomassi Tando,Yann Pomie,Bill Gates Happi Happiet al. 14. Semantic Web Applications and Tools for Health Care and Life Sciences Conference (SWAT4HCLS), Feb 2023, Basel, Switzerland. pp.167-168 Communication dans un congrès hal-04005132v1
DLinker Results for OAEI 2022 Bill Gates Happi Happi,Géraud Fokou Pelap,Danai Symeonidou,Pierre Larmande 17. International Workshop on Ontology Matching (OM2022), Oct 2022, Online, France. pp.166-173 Communication dans un congrès hal-03967103v1
AgroLD: A knowledge graph for the plant sciences Pierre Larmande,Konstantin Todorov ISWC 2021 - 20th International Semantic Web Conference, Oct 2021, Virtual, France. pp.496-510, ⟨10.1007/978-3-030-88361-4_29⟩ Communication dans un congrès hal-03443436v1
AgroLD: une base de connaissances pour l'étude du phénome des plantes cultivées Pierre Larmande,Tagny Gildas,Manuel Ruiz EGC 2021 - 21e Conférence Extraction et Gestion des Connaissances, Jan 2021, Online, France. pp.461-468 Communication dans un congrès hal-03107587v1
Candidate gene prioritization using graph embedding Quan Do,Pierre Larmande RIVF 2020 - International Conference on Computing and Communication Technologies, Oct 2020, Ho Chi Minh City, France. pp.1-6, ⟨10.1109/RIVF48685.2020.9140776⟩ Communication dans un congrès lirmm-03615404v1
Candidate gene prioritization using graph embedding Quan Do,Pierre Larmande IEEE-RIVF 2020, Apr 2020, Ho Chi Minh City, Vietnam Communication dans un congrès hal-02461886v1
AgroLD: a Linked Data platform to understand plant genotype-phenotype interactions Pierre Larmande,Gildas Tagny Ngompé,Manuel Ruiz International Symposium on Integrative Bioinformatics 2019 (IB 2019), INRA, Sep 2019, Paris, France. 1 p Communication dans un congrès hal-05174233v1
AgroLD: un graphe de connaissances pour la caractérisation des mécanismes moléculaires complexes impactant le phénome des plantes Pierre Larmande,Gildas Tagny,Manuel Ruiz 30es Journées Francophones d'Ingénierie des Connaissances, IC 2019, AFIA, Jul 2019, Toulouse, France. pp.217-218 Communication dans un congrès hal-02329684v1
Data standards for plant phenotyping: MIAPPE and its implementations Cyril Pommier,Guillaume Cornut,Thomas Letellier,Célia Michotey,Pascal Neveuet al. 26. Plant and Animal Genome Conference (PAG XXVI), Jan 2018, San Diego, United States. pp.24 slides Communication dans un congrès hal-02789754v1
Comparative study of Named-Entity Recognition methods in the agronomical domain Huy Do,Hanh Tran,Quang Khoat Than,Pierre Larmande CiCling, Mar 2018, Hanoi, Vietnam Communication dans un congrès hal-01711331v1
Reusing the NCBO BioPortal technology for agronomy to build AgroPortal Clement Jonquet,Anne Toulet,Elizabeth Arnaud,Sophie Aubin,Esther Dzalé-Yeumoet al. ICBO 2016 - 7th International Conference on Biomedical Ontologies, P. Jaiswal; R. Hoehndorf, Aug 2016, Corvallis, OR, United States Communication dans un congrès hal-01398251v1
Development of a knowledge system for Big Data: Case study to plant phenotyping data Luyen Le Ngoc,Anne Tireau,Aravind Venkatesan,Pascal Neveu,Pierre Larmande WIMS: Web Intelligence, Mining and Semantics, Mines Ales, Jun 2016, Nîmes, France. pp.1-9, ⟨10.1145/2912845.2912869⟩ Communication dans un congrès hal-01411565v1
Exposing French agronomic resources as Linked Open Data Aravind Venkatesan,Nordine El Hassouni,Florian Phillipe,Cyril Pommier,Hadi Quesnevilleet al. IN-OLIVE, Jun 2016, Montpellier, France Communication dans un congrès hal-01411759v1
Ontology-based services and knowledge management in the Agronomic Domain Pierre Larmande RDA: Research Data Alliance, Sep 2015, Paris, France Communication dans un congrès lirmm-01274693v1
Exposing French agronomic resources as Linked Open Data Aravind Venkatesan,Nordine El Hassouni,Florian Philippe,Cyril Pommier,Hadi Quesnevilleet al. SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2015, Cambridge, United Kingdom Communication dans un congrès lirmm-01274884v1
Towards efficient data integration and knowledge management in the Agronomic domain Aravind Venkatesan,Nordine El Hassouni,Florian Phillipe,Cyril Pommier,Hadi Quesnevilleet al. APIA: Applications Pratiques de l'Intelligence Artificielle, Institut National de Recherche en Informatique et en Automatique (INRIA). FRA., Jul 2015, Rennes, France. pp.117-124 Communication dans un congrès hal-01176903v1
AgroPortal : a proposition for ontology-based services in the agronomic domain Clement Jonquet,Esther Dzalé-Yeumo,Elizabeth Arnaud,Pierre Larmande IN-OVIVE, Jun 2015, Rennes, France Communication dans un congrès lirmm-01172232v1
Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study Cécile Fleury,Marie Francoise M. F. Gautier,Pierre Larmande,Sabine Pérès,Frédéric F. de Lamotteet al. JOBIM2010, Sep 2010, Montpellier, France Communication dans un congrès hal-02753839v1
Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study Cécile Fleury,Marie Francoise M. F. Gautier,Pierre Larmande,Sabine Pérès,Frédéric F. de Lamotteet al. Séminaire Génomique Végétale, Mar 2010, Pont-Royal en Provence, France Communication dans un congrès hal-02752562v1
Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study Cécile Fleury,Marie Francoise M. F. Gautier,Pierre Larmande,Sabine Pérès,Frédéric F. de Lamotteet al. 18. Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Jul 2010, Boston, United States Communication dans un congrès hal-02753301v1
A personalized integrated system for functional genomic analysis Gaëtan Droc,Christophe Perin,Sébastien Fromentin,Pierre Larmande 17. Conference Plant & Animal Genomes, Jan 2009, San Diego, United States Communication dans un congrès hal-02757250v1
Integration of Data Sources for Plant Genomics Pierre Larmande,C. Tranchant-Dubreuil,L. Regnier,Isabelle Mougenot,Thérèse Libourel Rouge ICEIS'06: 8th International Conference on Enterprise Information Systems, May 2006, Paphos, Cyprus. pp.314-318 Communication dans un congrès lirmm-00093998v1

Poster de conférence (18)

BReIF: une e-infrastructure pour accélérer l'utilisation de ressources biologiques diversifiées Anne-Françoise Adam-Blondon,Christine Gaspin,Michèle Tixier-Boichard,Hélène Chiapello,Frédéric Chouletet al. Trans Numériques 2026, Feb 2026, Rennes, France. Poster de conférence hal-05514911v1
Protein Function Prediction: Graph Neural Networks as Multimodal Aggregators of Sequences, Networks, and Ontologies Antoine Toffano,Jérôme Azé,Pierre Larmande JOBIM 2025 - 25es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. Poster de conférence hal-05194109v1
Leveraging ontology structure for machine learning in knowledge graphs Elliot Hugo Butz,Jérôme Azé,Konstantin Todorov,Antoine Toffano,Pierre Larmande JOBIM 2024 - 24es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France Poster de conférence hal-04636636v1
Integration of variation data through SPARQL Micro-Services Frederic Metereau,Franck Michel,PIERRE LARMANDE,Guilhem Sempere,Catherine Faron Semantic Web for Health Care and Life Science (SWA4HCLS), Feb 2024, Leiden (DE), Netherlands Poster de conférence ird-04812730v1
Graph Neural Networks For Biological Knowledge Discovery Antoine Toffano,Jérôme Azé,Pierre Larmande JOBIM 2024 - 24es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France. Poster de conférence hal-04631478v1
The AgroLD project : A Knowledge Graph Database for plant functional genomics Pierre Larmande,Aravind Venkatesan,Gildas Tagny,Quan Do,Bertrand Pitollatet al. Fête de la Science - 30 ans du LIRMM, Oct 2022, Montpellier, France. Poster de conférence hal-04005129v1
AgroLD: A Knowledge Graph Database for plant functional genomics Bertrand Pitollat,Ndomassi Tando,Mathieu Rouard,Gaetan Droc,Aravind Venkatesanet al. JOBIM 2021, Jul 2021, Paris, France. 2018, ⟨10.1101/325423⟩ Poster de conférence hal-03269813v1
D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity Sophie Aubin,Anne-Francoise Adam-Blondon,Michael Alaux,Mouhamadou Ba,Stéphan Bernardet al. 14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩ Poster de conférence lirmm-02351000v1
Integration and Visualization of Epigenome and Mobilome Data in Crops Dagmara Robakowska Hyzorek,Marie Mirouze,Pierre Larmande JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. , 2016 Poster de conférence hal-01411668v1
AgroLD indexing tools with ontological annotations Stella Zevio,Nordine El Hassouni,Manuel Ruiz,Pierre Larmande SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2016, Amsterdam, Netherlands. , 11th Internationale Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences, 2016 Poster de conférence hal-01411713v1
Construction d’un gold standard pour les données agronomiques Imène Chentli,Pierre Larmande,Konstantin Todorov IC 2016 - 27es Journées francophones d'Ingénierie des Connaissances, Jun 2016, Montpellier, France. , 2016 Poster de conférence hal-01411683v1
AgroPortal: an open repository of ontologies and vocabularies for agriculture and nutrition data Clement Jonquet,Anne Toulet,Elizabeth Arnaud,Sophie Aubin,Esther Dzalé Yeumoet al. Ben Schaap. GODAN Summit, Sep 2016, New York, NY, United States. , 2016 Poster de conférence hal-01398252v1
AgroPortal : A Proposition for Ontology-Based Services in the Agronomic Domain Clement Jonquet,Esther Dzalé-Yeumo,Elizabeth Arnaud,Pierre Larmande,Anne Touletet al. XXIV International Plant & Animal Genome Conference (PAG 2016), Poster session, Jan 2016, San Diego, United States. , P0343, 2016, Systems Biology and Ontologies, Poster session Poster de conférence lirmm-01397465v1
Development of a generic indexing tool to optimize the use of biological data Luyen Le Ngoc,Stéphane Jouannic,Pascal Gantet,Pierre Larmande JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , Post-096 (#21), 2015 Poster de conférence lirmm-01274707v1
South Green bioinformatics platform: Update 2015 A. Armero,Franc-Christophe Baurens,Stephanie Bocs,A. Breil,Frédéric F. de Lamotteet al. 3. Plant Genomics Congress, May 2015, London, United Kingdom. Global Engage, 2015, Plant Genomics Congress Poster de conférence hal-02739966v1
Data integration in the agronomic domain : national and international data discovery system Florian Philippe,Aravind Venkatesan,Nordine El Hassouni,Cyril Pommier,Manuel Ruizet al. JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , Post-105 (#59), 2015 Poster de conférence lirmm-01274725v1
Facilitating efficient knowledge management and discovery in the Agronomic Sciences Aravind Venkatesan,Pierre Larmande,Clement Jonquet,Manuel Ruiz,Patrick Valduriez 4. Research Data Alliance Plenary Meeting (RDA P4), Sep 2014, Amsterdam, Netherlands. , 2014 Poster de conférence lirmm-01071822v1
Semantic Annotation Workflow using Bio-Ontologies Emmanuel Castanier,Clement Jonquet,Soumia Melzi,Pierre Larmande,Manuel Ruizet al. Workshop on Crop Ontology and Phenotyping Data Interoperability, Mar 2014, Montpellier, France. , 1 p., 2014 Poster de conférence lirmm-01052546v1

Chapitre d'ouvrage (2)

AgroLD: A Knowledge Graph Database for Plant Functional Genomics Pierre Larmande,Gildas Tagny Ngompe,Aravind Venkatesan,Manuel Ruiz Plant Bioinformatics, 2443, Springer US, pp.527-540, 2022, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2067-0_28⟩ Chapitre d'ouvrage lirmm-03615352v1
Managing High-Density Genotyping Data with Gigwa Guilhem Sempéré,Pierre Larmande,Mathieu Rouard Plant Bioinformatics, 2443, Springer US, pp.415-427, 2022, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2067-0_21⟩ Chapitre d'ouvrage lirmm-03615359v1

Autre publication scientifique (1)

Benchmarcking Application main portal Luyen Le Ngoc,Anne Tireau,Aravind Venkatesen,Pascal Neveu,Pierre Larmande 2016 Autre publication scientifique hal-02795939v1

Pré-publication, Document de travail (3)

Bridging Scales: A Multi-Level Graph Neural Network for Protein Function Prediction Antoine Toffano,Jérôme Azé,Pierre Larmande 2026 Pré-publication, Document de travail hal-05580207v1
GRU-SCANET: Unleashing the Power of GRU-based Sinusoidal CApture Network for Precision-driven Named Entity Recognition Bill Gates Happi Happi,Geraud Fokou Pelap,Danai Symeonidou,Pierre Larmande 2024 Pré-publication, Document de travail ird-04818879v1
Fine-tuning Large Language Models (LLMs) for Entity Alignment in Knowledge Graphs (KG) Bill Gates Happi Happi,Danai Symeonidou,Géraud Fokou Pelap,Pierre Larmande 2024 Pré-publication, Document de travail ird-04812722v2

Rapport (2)

DMP projet ANR DIG-AI Jérôme Azé,Antony Champion,Konstantin Todorov,Alexandre Grondin,Mikaël Lucaset al. IRD. Institut de Recherche pour le Développement. 2023 Rapport (plan de gestion de données/data management plan) hal-04161144v1
Intégration de Sources de Données pour la Génomique Végétale Pierre Larmande,C. Dubreui,Thérèse Libourel Rouge,Isabelle Mougenot 2005 Rapport (rapport contrat/projet) lirmm-00106551v1

Thèse (1)

Mutualiser et partager, un défi pour la génomique fonctionnelle végétale Pierre Larmande Bio-informatique [q-bio.QM]. Universite Montpellier 2, 2007. Français. ⟨NNT : ⟩ Thèse tel-01401210v1

HDR (1)

Intégration de données multi-échelles et extraction de connaissances en agronomie : exemples et perspectives Pierre Larmande Bio-informatique [q-bio.QM]. Montpellier II, 2019 HDR tel-02105913v4