Access content directly

Pierre Poulain

50
Documents

Publications

Image document

A field guide for implementing a flipped classroom

Pierre Poulain , Mickael Bertrand , Héloise Dufour , Antoine Taly
Biochemistry and Molecular Biology Education, 2023, ⟨10.1002/bmb.21737⟩
Journal articles hal-04099156v2
Image document

The five pillars of computational reproducibility: bioinformatics and beyond

Mark Ziemann , Pierre Poulain , Anusuiya Bora
Briefings in Bioinformatics, 2023, 24 (6), pp.1-13. ⟨10.1093/bib/bbad375⟩
Journal articles hal-04255776v1
Image document

AutoClassWeb: a simple web interface for Bayesian clustering of omics data

Pierre Poulain , Jean-Michel Camadro
BMC Research Notes, 2022, 15 (1), pp.241. ⟨10.1186/s13104-022-06129-6⟩
Journal articles hal-03858142v1
Image document

AutoClassWeb: a simple web interface for Bayesian clustering of omics data

Pierre Poulain , Jean‐michel Camadro
BMC Research Notes, 2022, 15 (1), pp.241. ⟨10.1186/s13104-022-06129-6⟩
Journal articles hal-03718406v1
Image document

buildH: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters

Hubert Santuz , Amélie Bacle , Pierre Poulain , Patrick F J Fuchs
Journal of Open Source Software, 2021, 6 (65), pp.3521. ⟨10.21105/joss.03521⟩
Journal articles hal-03481632v1
Image document

Novel Insights into Quantitative Proteomics from an Innovative Bottom-Up Simple Light Isotope Metabolic (bSLIM) Labeling Data Processing Strategy

Nicolas Sénécaut , Gelio Alves , Hendrik Weisser , Laurent Lignières , Samuel Terrier
Journal of Proteome Research, 2021, 20 (3), pp.1476-1487. ⟨10.1021/acs.jproteome.0c00478⟩
Journal articles hal-03266586v1
Image document

BGC‐Argo Floats Observe Nitrate Injection and Spring Phytoplankton Increase in the Surface Layer of Levantine Sea (Eastern Mediterranean)

Fabrizio d'Ortenzio , V. Taillandier , Hervé Claustre , Laurent Coppola , P. Conan
Geophysical Research Letters, 2021, 48 (8), ⟨10.1029/2020GL091649⟩
Journal articles hal-03217440v1
Image document

AutoClassWrapper: a Python wrapper for AutoClass C classification

Jean-Michel Camadro , Pierre Poulain
Journal of Open Source Software, 2019, 4 (39), pp.1390. ⟨10.21105/joss.01390⟩
Journal articles hal-02389319v1
Image document

Pixel: a content management platform for quantitative omics data

Thomas Denecker , William Durand , Julien Maupetit , Charles Hébert , Jean-Michel Camadro
PeerJ, 2019, 7, pp.e6623. ⟨10.7717/peerj.6623⟩
Journal articles hal-03100146v1
Image document

Meet-U: educating through research immersion

Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon
PLoS Computational Biology, 2018, 14 (3), pp.1-10. ⟨10.1371/journal.pcbi.1005992⟩
Journal articles hal-01722019v1
Image document

An Integrative Approach to the Study of Filamentous Oligomeric Assemblies, with Application to RecA

Benjamin Boyer , Johann Ezelin , Pierre Poulain , Adrien Saladin , Martin Zacharias
PLoS ONE, 2015, 10 (3), pp.e0116414. ⟨10.1371/journal.pone.0116414⟩
Journal articles hal-01230983v1
Image document

Tolérance du dispositif intra-utérin au cuivre chez les patientes nullipares : étude prospective unicentrique

C. Guicheteau , L. Boyer , D. A. Somé , J. Leveque , P. Poulain
Gynécologie Obstétrique & Fertilité, 2015, 43 (2), pp.144--150. ⟨10.1016/j.gyobfe.2015.01.003⟩
Journal articles hal-01147373v1
Image document

Cis-trans isomerization of omega dihedrals in proteins.

Pierrick Craveur , Agnel Praveen Joseph , Pierre Poulain , Joseph Rebehmed , Alexandre de Brevern
Amino Acids, 2013, 45 (2), pp.279-89. ⟨10.1007/s00726-013-1511-3⟩
Journal articles inserm-00926521v1
Image document

Modeling and molecular dynamics of HPA-1a and -1b polymorphisms: effects on the structure of the β3 subunit of the αIIbβ3 integrin.

Vincent Jallu , Pierre Poulain , Patrick F. J. Fuchs , Cécile Kaplan , Alexandre de Brevern
PLoS ONE, 2012, 7 (11), pp.e47304. ⟨10.1371/journal.pone.0047304⟩
Journal articles inserm-00926600v1
Image document

Prostaglandin E2 release from astrocytes triggers gonadotropin-releasing hormone (GnRH) neuron firing via EP2 receptor activation.

Jerome Clasadonte , Pierre Poulain , Naresh K. Hanchate , Gabriel Corfas , Sergio R. Ojeda
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (38), pp.16104-9. ⟨10.1073/pnas.1107533108⟩
Journal articles inserm-00626467v1
Image document

Ten simple rules for getting help from online scientific communities.

Giovanni M Dall'Olio , Jacopo Marino , Michael Schubert , Kevin L. Keys , Melanie I. Stefan
PLoS Computational Biology, 2011, 7 (9), pp.e1002202. ⟨10.1371/journal.pcbi.1002202⟩
Journal articles inserm-00664605v1
Image document

Detection and architecture of small heat shock protein monomers.

Pierre Poulain , Jean-Christophe Gelly , Delphine Flatters
PLoS ONE, 2010, 5 (4), pp.e9990. ⟨10.1371/journal.pone.0009990⟩
Journal articles inserm-00474076v1
Image document

Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments.

Adrien Saladin , Christopher Amourda , Pierre Poulain , Nicolas Férey , Marc Baaden
Nucleic Acids Research, 2010, 38 (19), pp.6313-23. ⟨10.1093/nar/gkq459⟩
Journal articles hal-00533099v1
Image document

Transitions between secondary structures in isolated polyalanines

Florent Calvo , Pierre Poulain
The European Physical Journal D : Atomic, molecular, optical and plasma physics, 2009, 51 (1), pp.15-23. ⟨10.1140/epjd/e2008-00096-0⟩
Journal articles inserm-00320828v1
Image document

PTools: an opensource molecular docking library.

Adrien Saladin , Sébastien Fiorucci , Pierre Poulain , Chantal Prévost , Martin Zacharias
BMC Structural Biology, 2009, 9, pp.27. ⟨10.1186/1472-6807-9-27⟩
Journal articles inserm-00474185v1
Image document

Insights on protein-DNA recognition by coarse grain modelling.

Pierre Poulain , Adrien Saladin , Brigitte Hartmann , Chantal Prévost
Journal of Computational Chemistry, 2008, 29 (15), pp.2582-92. ⟨10.1002/jcc.21014⟩
Journal articles inserm-00320808v1

Length of pushing efforts: pushing is not playing. Reply to the article of C. Le Ray and F. Audibert

J.-P. Schaal , M. Dreyfus , F. Bretelle , B. Carbonne , O. Dupuis
Journal de Gynécologie Obstétrique et Biologie de la Reproduction, 2008, 37 (7), pp.715-723. ⟨10.1016/j.jgyn.2008.08.001⟩
Journal articles hal-00493417v1

Competition between secondary structures in gas phase polyalanines

Pierre Poulain , Florent Calvo , Rodolphe Antoine , Michel Broyer , Philippe Dugourd
EPL - Europhysics Letters, 2007, 79 (6), pp.66003. ⟨10.1209/0295-5075/79/66003⟩
Journal articles inserm-00264366v1

Performances of Wang-Landau algorithms for continuous systems.

Pierre Poulain , Florent Calvo , Rodolphe Antoine , Michel Broyer , Philippe Dugourd
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2006, 73 (5 Pt 2), pp.056704. ⟨10.1103/PhysRevE.73.056704⟩
Journal articles inserm-00264367v1

Comparison of the fragmentation pattern induced by collisions, laser excitation and electron capture. Influence of the initial excitation.

Rodolphe Antoine , Michel Broyer , Julia Chamot-Rooke , Claude Dedonder , Charles Desfrançois
Rapid Communications in Mass Spectrometry, 2006, 20 (11), pp.1648-52. ⟨10.1002/rcm.2489⟩
Journal articles inserm-00264369v1

Monte Carlo simulations of flexible molecules in a static electric field: electric dipole and conformation

P. Poulain , R. Antoine , M. Broyer , P. Dugourd
Chemical Physics Letters, 2005, 401, pp.1--6. ⟨10.1016/j.cplett.2004.11.025⟩
Journal articles hal-00018545v1

Size distribution of fat globules in human colostrum, breast milk, and infant formula

Marie-Caroline Michalski , Valérie Briard-Bion , F. Michel , F Tasson , P. Poulain
Journal of Dairy Science, 2005, 88, pp.1927-1940
Journal articles hal-01453966v1

Motor cortical control of cardiovascular bulbar neurones projecting to spinal autonomic areas.

Odile Viltart , Olivia Mullier , François Bernet , Pierre Poulain , Saadia Ba-M'Hamed
Journal of Neuroscience Research, 2003, 73 (1), pp.122-35. ⟨10.1002/jnr.10598⟩
Journal articles hal-00332926v1

Cortical control of somato-cardiovascular integration: neuroanatomical studies.

H. Sequeira , O. Viltart , S. Ba-M'Hamed , P. Poulain
Brain Research Bulletin, 2000, 53 (1), pp.87-93
Journal articles hal-00332937v1
Image document

Projet PédaGo! Transformons les pratiques entre pairs

Catherine de la Fouchardiere , Guillaume Anquetin , Pierre Poulain , Lorette Sicard , Marine Lanteri
L'ENSEIGNEMENT SUPÉRIEUR ET LES COMMUNAUTÉS : DES DYNAMIQUES INTERCONNECTÉES, AIPU international, May 2024, Sherbrooke (Québec), Canada
Conference papers hal-04555329v1
Image document

Plasma : plateforme d'e-learning pour l'analyse interactive de données

Jérémy Tuloup , Claire Vandiedonck , Sandrine Caburet , Pierre Poulain
Journées Réseaux de l'Enseignement et de la Recherche (JRES), May 2022, Marseille, France
Conference papers hal-03563658v2
Image document

7 – Mastite du post-partum à streptocoque ß-hémolytique du groupe A : à propos d’un cas

F. Desbrousses , S. Rouquette , J.M. Chapplain , P. Poulain
33° Journées de la Société Française de Sénologie et de Pathologie Mammaire (SFSPM), Marseille, 2011. Cancer du sein : surdiagnostic, surtraitement. A la recherche d'un nouvel équilibre, Nov 2011, Marseille, France. pp.248
Conference papers hal-03575862v1

Hypothalamic astrocytes induce the neuronal maturation and function of GnRH-expressing GnV cells

Sarah Geller , V. Mansuy , P. Poulain , J.P. Rey , M. Giacomini
7. International Congress of Neuroendocrinology - A Satellite Symposium "Plasticity of Neuroendocrine Systems", Jul 2010, Tours, France
Conference papers hal-02754605v1

Impact of hypothalamic astrocytes on GnV-3 GnRH secreting cells: functional and transcriptomic analysis

V. Mansuy , Sarah Geller , J.P. Rey , P. Poulain , M. Giacomini
92. Annual Meeting & Expo of the Endocrine Society (ENDO 2010), Jun 2010, San Diego, United States
Conference papers hal-02757522v1

Rôle des astrocytes dans la maturation neuronale de la lignée hypothalamique adulte GnV sécrétant la GnRH

Sarah Geller , P. Poulain , Nicolas Peineau , Anne Duittoz , V. Prevot
36. Colloque de la Société de Neuroendocrinologie, Sep 2009, Nice, France
Conference papers hal-02753378v1
Image document

3D modeling of Hi-C contacts: seeing the spatial organization of fungal chromosomes

Thibault Poinsignon , Mélina Gallopin , Pierre Grognet , Fabienne Malagnac , Gaëlle Lelandais
16th European Conference on Fungal Genetics, Mar 2023, Innsbruck, Austria. 2023
Conference poster hal-04041735v1
Image document

The IFB e-Learning Working Group

Hélène Chiapello , Thomas Denecker , Gildas Le Corguillé , Pierre Poulain , Denis Puthier
JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques) 2021, Jul 2021, Paris, France.
Conference poster hal-03296617v1
Image document

La classe inversée. Exemple 2 : Retour d'expérience sur une classe inversée en bio-informatique

Pierre Poulain
Jean-François Parmentier, Quentin Vicens. Enseigner et former - 2e édition Psychologie appliquée et pédagogies actives, secondaire, supérieur, formation professionnelle, Dunod, 2022
Book sections hal-03737367v1
Image document

Working with omics data, an interdisciplinary challenge at the crossroads of biology and computer science

Thibault Poinsignon , Pierre Poulain , Mélina Gallopin , Gaëlle Lelandais
Machine Learning for Brain Disorders, inPress
Book sections hal-03738102v1
Image document

Structure et dynamique de protéines isolées : approches statistiques

Pierre Poulain
Biophysique [physics.bio-ph]. Université Claude Bernard - Lyon I, 2006. Français. ⟨NNT : ⟩
Theses tel-00094458v2
Image document

Recyclage des données de la recherche en biologie : vers une bioinformatique écologique ?

Pierre Poulain
Bio-informatique [q-bio.QM]. Université Paris Cité, 2022
Habilitation à diriger des recherches tel-03737350v1
Image document

Introduction à la programmation Python pour la biologie

Patrick F. J. Fuchs , Pierre Poulain
Master. Programmation Python, Paris, France. 2023, pp.298
Lectures hal-03264103v4
Image document

Modélisation mathématique en biologie (MOMAB)

Tamara Servi , Pierre Poulain
Licence. Modélisation mathématique en biologie (MOMAB), Paris, France. 2020, pp.193
Lectures hal-03263031v1