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Pierrick Haffray

44
Documents
Identifiants chercheurs

Présentation

After 3 years as biologist in the INRA-Ifremer experimental station of marine salmonids (SEMII, Camaret, France) and in the rainbow trout companies Pisciculture Bellet (Angoulême, France) and Truite de Bretagne (Morlaix, France), I joined (1990) the French association of poultry and aquaculture breeders (SYSAAF, Rennes, France) to develop first commercial breeding programs in the French aquaculture, primarily in salmonids as rainbow trout or charrs, followed by marine fishes as sea bass, sea bream or meagre (1992), sturgeons (1996), Pacific or flat oyster and clam (2001) and shrimps (2009). I'm now managing a team of 6 geneticist and 3 PhD students at the Aquaculture section of SYSAAF that advise 25 breeding companies selecting 18 aquaculture species in France and in Madagascar, Mozambique, Mexico, Thailand and in the past in Indonesia. My main research interests were the adaptation of principles of domestication and genetic selection to aquaculture species in using DNA-parentage assignment in combining mass and sib-selection, the development of high through put technologies to phenotype quality traits (micro-wave, artificial vision, ultrasound, MRI, RMN), the optimisation of gametes collection and larval conservation and cryoconservation, the monosexing and the triploidisation and recently (since 2014) the improvement of disease resistances to nine different diseases based on challenge tests (OHsV1, IPN, VHS, VNN, F. psychrophilum, P. piscicidae, E. tarda, V. harveyi, V. tapetis) and sib selection. My current primary research interests are the development and the application of genomic tools in genomic selection in different species (rainbow trout, sea bass, sea bream, Pacific oyster, white leg shrimp), the application of spectrometry (NIR, Raman) to target new traits as fatty acid composition to improve aquaculture nutritional value and since the two years the breeding of pearl oyster. Past Board member of the European Forum for Farm Animal Breeders (EFFAB), the European platform on Farm Animal Breeding and REproduction (FABRE) and the Labogena genotyping laboratory, I'm co-authored over 100 scientific publications and I was awarded (2019) by the French Academy of Agriculture for my inputs in the development of breeding programs in aquaculture.

Publications

marc-vandeputte
"anastasia-bestin"
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Whole‐genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass

Emilie Delpuech , Marc Vandeputte , Romain Morvezen , Anastasia Bestin , Mathieu Besson
Genetics Selection Evolution, 2023, 55, pp.30. ⟨10.1186/s12711-023-00805-2⟩
Article dans une revue hal-04116035v1

Potential for genomic selection on feed efficiency in gilthead sea bream (Sparus aurata), based on individual feed conversion ratio, carcass and lipid traits

Mathieu Besson , Nicky Rombout , Germain Salou , Alain Vergnet , Sophie Cariou
Aquaculture Reports, 2022, 24, ⟨10.1016/j.aqrep.2022.101132⟩
Article dans une revue hal-03679214v1

Genetic parameters of caviar yield, color, size and firmness using parentage assignment in an octoploid fish species, the Siberian sturgeon Acipenser baerii

Anastasia Bestin , Olivier Brunel , Arnaud Malledant , Bastien Debeuf , Philippe Benoit
Aquaculture, 2021, 540, pp.1-7. ⟨10.1016/j.aquaculture.2021.736725⟩
Article dans une revue hal-03198203v1
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Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, the European Sea Bass (Dicentrarchus labrax) and the Gilthead Sea Bream (Sparus aurata)

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen
Frontiers in Genetics, 2021, 12, pp.665920. ⟨10.3389/fgene.2021.665920⟩
Article dans une revue hal-03360561v1
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Can we identify wild-born salmon from parentage assignment data? A case study in the Garonne-Dordogne rivers salmon restoration programme in France

Marc Vandeputte , Anastasia Bestin , Louarn Fauchet , Jean-Michel Allamellou , Stéphane Bosc
Aquatic Living Resources, 2021, 34, pp.1-10. ⟨10.1051/alr/2021008⟩
Article dans une revue hal-03188874v1

Morphological predictors of slaughter yields using 3D digitizer and their use in a common carp breeding program

Martin Prchal , Martin Kocour , Marc Vandeputte , Antti Kause , Alain Vergnet
Aquaculture, 2020, 520, pp.1-9. ⟨10.1016/j.aquaculture.2020.734993⟩
Article dans une revue hal-02627292v1
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How to genetically increase fillet yield in fish: Relevant genetic parameters and methods to predict genetic gain

Marc Vandeputte , Clémence Fraslin , Pierrick Haffray , Anastasia Bestin , François Allal
Aquaculture, 2020, 519, pp.734877. ⟨10.1016/j.aquaculture.2019.734877⟩
Article dans une revue hal-03150887v1
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First evidence of realized selection response on fillet yield in Rainbow trout Oncorhynchus mykiss, Using Sib selection or based on correlated ultrasound measurements

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Jean-Michel Allamellou
Frontiers in Genetics, 2019, 10, pp.1-13. ⟨10.3389/fgene.2019.01225⟩
Article dans une revue hal-02627462v1

How to genetically increase fillet yield in fish: New insights from simulations based on field data

Clémence Fraslin , Mathilde Dupont-Nivet , Pierrick Haffray , Anastasia Bestin , Marc Vandeputte
Aquaculture, 2018, 486, pp.175-183. ⟨10.1016/j.aquaculture.2017.12.012⟩
Article dans une revue hal-01674984v1
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Genome-wide association and genomic prediction of resistance to viral nervous necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing

Christos Palaiokostas , Sophie Cariou , Anastasia Bestin , Jean-Sebastien Bruant , Pierrick Haffray
Genetics Selection Evolution, 2018, 50 (1), pp.1-11. ⟨10.1186/s12711-018-0401-2⟩
Article dans une revue hal-01826622v1
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Potential for genetic improvement of the main slaughter yields in Common Carp with in vivo morphological predictors

Martin Prchal , Jérôme Bugeon , Marc Vandeputte , Antti Kause , Alain Vergnet
Frontiers in Genetics, 2018, 9, pp.1-13. ⟨10.3389/fgene.2018.00283⟩
Article dans une revue hal-02625209v1

Investigation of morphological predictors of fillet and carcass yield in European sea bass (Dicentrarchus labrax) for application in selective breeding

Marc Vandeputte , Antonio Puledda , Anne Sophie Tyran , Anastasia Bestin , Céline Coulombet
Aquaculture, 2017, 470, pp.40-49. ⟨10.1016/j.aquaculture.2016.12.014⟩
Article dans une revue hal-01595276v1
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WHOLE GENOME SEQUENCING TO REFINE THE DETECTION OF QTL FOR VIRAL NERVOUS NECROSIS IN EUROPEAN SEA BASS (DICENTRARCHUS LABRAX)

Emilie Delpuech , Marc Vandeputte , Florence Phocas , Anastasia Bestin , Mathieu Besson
6th symposium on Genomics in Aquaculture Symposium, May 2022, Grenade, Spain
Communication dans un congrès hal-04116026v1

Cartographie fine de la résistance à la nécrose nerveuse virale chez le bar identifiée par séquençage du génome entier

Emilie Delpuech , Marc Vandeputte , Florence Phocas , Yoannah François , Anastasia Bestin
7èmes Journées Recherche Filière Piscicole, Jul 2022, Paris, France
Communication dans un congrès hal-04185459v1

Can genomics improve the selection efficiency of sea bream (Sparus aurata) candidates reared in sanitary protected RAS when GxE exist with the production environment in open-sea cages?

Anastasia Bestin , Jonathan D’ambrosio , Mathieu Besson , F Massieu , Alain Vergnet
XIV. International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile
Communication dans un congrès hal-04185868v1

Fine mapping for Viral Nervous Necrosis resistance in European sea bass (Dicentrarchus labrax) identified by whole genome sequencing

Emilie Delpuech , Marc Vandeputte , Florence Phocas , Anastasia Bestin , Mathieu Besson
Aquaculture Europe 2022, Sep 2022, Rimini, Italy
Communication dans un congrès hal-04185721v1

Réduction du coût de la sélection génomique par utilisation de panels à plus faible densité de marqueurs chez le bar et la daurade

Jonathan D’ambrosio , Mathieu Besson , Anastasia Bestin , Jean-Sébastien Bruant , Aline Bajek
7. Journées de la Recherche Piscicole, Jul 2022, Paris, France
Communication dans un congrès anses-03889117v1

IFI6, an interferon alpha induced protein, identified by whole genome sequencing as involved in Viral Nervous Necrosis resistance in European sea bass (Dicentrarchus labrax)

Emilie Delpuech , Marc Vandeputte , Romain Morvezen , Anastasia Bestin , Mathieu Besson
International Symposium on Genetics in Aquaculture XIV, Nov 2022, Puerto Varas, Chile
Communication dans un congrès hal-04185918v1

Genome wide association studies revealed one strong effect QTLfor viral nervous necrosis resistance in European sea bass (Dicentrarchus labrax)

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen
Aquaculture Europe 2020, Apr 2021, Cork, Ireland
Communication dans un congrès hal-03198222v1

Genetic correlations between processing traits and individual feed efficiency in a gilthead sea bream (Sparus aurata) commercial line

Anastasia Bestin , Mathieu Besson , Alain Vergnet , François Allal , Frédéric Clota
Aquaculture Europe 2021, Oct 2021, Funchal, Portugal
Communication dans un congrès hal-03360548v1

Combining data from successive cohorts to increase the accuracy of estimated breeding values: a case study in a gilthead sea bream (Sparus aurata) commercial line

Anastasia Bestin , Sophie S. Cariou , Jean-Sébastien J.-S. Bruant , Marc Vandeputte , Florian Enez
Aquaculture Europe 2020 online, Apr 2021, Cork, Ireland
Communication dans un congrès hal-03187498v1

Intégration de caractères de résistance à cinq pathologies dans les schémas de sélection commerciale de truite, bar et daurade

Anastasia Bestin , Yoannah François , Thierry Morin , Mathilde Dupont-Nivet , Marc Vandeputte
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Communication dans un congrès hal-02264929v1

Interaction génotype x aliment: que sait-on, où va-t-on ?

Marc Vandeputte , Pierrick Haffray , Anastasia Bestin , François Allal , Mathilde Dupont-Nivet
Journée du SFAM, Mar 2019, Montpellier, France
Communication dans un congrès hal-03187439v1

Réponse à la sélection sur le rendement de filet chez la truite arc-en-ciel

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Jean-Michel Allamelou
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Communication dans un congrès hal-02734410v1

Morphological predictors of slaughter yields using 3D digitizer and their utilization in common carp breeding program

Martin Prchal , Jérôme Bugeon , Marc Vandeputte , A. Kause , Alain Vergnet
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany
Communication dans un congrès hal-02317178v1

Successful realized selection response for fillet yield in rainbow trout Oncorhynchus mykiss

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Sébastien Courant
World Aquaculture 2018, European Aquaculture Society (EAS)., Aug 2019, Montpellier, France
Communication dans un congrès hal-02264916v1

How to genetically increase fillet yield in fish: relevant genetic parameters and methods for the estimation of genetic gain

Marc Vandeputte , Clémence Fraslin , Pierrick Haffray , Anastasia Bestin , François Allal
Aquaculture Europe 2019, Oct 2019, Berlin, Germany
Communication dans un congrès hal-03187446v1

Genetic parameters of resistance to gastroenteritis (rtge) and rainbow trout fry syndrome (rtfs) in rainbow trout oncorhynchus mykiss and their genetic correlations with production traits

Pierrick Haffray , Anastasia Bestin , Florian Enez , Sébastien Courant , Daniel Guemene
World Aquaculture 2018, Aug 2018, Montpellier, France
Communication dans un congrès hal-02738108v1
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A first demonstration of realized selection response for fillet yield in fish, in rainbow trout oncorhynchus mykiss

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Sebastien Courant
13. International Symposium for Genetics in Aquaculture (ISGA XIII), Jul 2018, Cairns, Australia
Communication dans un congrès hal-02264933v1

Heritabilities of resistance to VNN and vibriosis and genetic correlations with production traits and processing yields in two selected commercial lines of the European sea bass Dicentrarchus labrax

Romain Morvezen , Anastasia Bestin , Anne-Sophie Tiriau , Laurane Pallandre , Joelle Cabon
13th International Symposium Genetics in Aquaculture, Jul 2018, Cairns, Australia
Communication dans un congrès hal-03187102v1

Breeding for disease resistance in farmed fish in the era of high-throughput sequencing

Christos Palaiokostas , Martin Kocour , Tomáš Veselý , Sophie Cariou , Anastasia Bestin
11th World Congress on Genetics Applied to Livestock Production, Feb 2018, Auckland, New Zealand
Communication dans un congrès hal-03156780v1

Potential for genetic improvement of the main slaughter yields in common carp with in vivo morphological predictors

Martin Prchal , Jérôme Bugeon , Marc Vandeputte , Antti Kause , Alain Vergnet
World Aquaculture 2018, European Aquaculture Society (EAS)., Aug 2018, Montpellier, France. 848 p
Communication dans un congrès hal-02012648v1
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Peut-on sélectionner sur le rendement de filet chez les poissons ? (et chez le bar en particulier)

Marc Vandeputte , Clémence Fraslin , Jérôme Bugeon , François Allal , Antonio Puledda
Journée du SFAMN (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2017, Montpellier, France
Communication dans un congrès hal-03155369v1

How can we select for fillet yield in fish ? A simulation study

Clémence Fraslin , Mathilde Dupont-Nivet , Anastasia Bestin , Pierrick Haffray , Marc Vandeputte
Fish Breeders' Round Table, Jun 2016, Tromso, Norway
Communication dans un congrès hal-02799957v1

Genetic parameters of indirect predictors of gutted and fillet yields in the gilthead sea bream Sparus aurata in using 2D camera, 3D digitizer and ultrasound technologies

Pierrick Haffray , Dofungo Ouatarra , Sophie Cariou , Jean-Sébastien Bruant , Frederic Ventre
Aquaculture Europe 2016, Sep 2016, Edinburgh, United Kingdom. 1146 p
Communication dans un congrès hal-02741462v1

Utilisation d'imagerie et d'ultrasons pour l'amélioration du rendement en chair par sélection génétique de la daurade

Dofungo Ouatarra , Anastasia Bestin , Pierrick Haffray , Florian Enez , Sophie Cariou
5. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2016, Paris, France. pp.30
Communication dans un congrès hal-02741919v1

Can we select fish for improved fillet yield? A simulation study using base data from three different species

Clémence Fraslin , Mathilde Dupont-Nivet , Anastasia Bestin , Pierrick Haffray , Marc Vandeputte
Aquaculture Europe 2016, Sep 2016, Edinburgh, United Kingdom
Communication dans un congrès hal-01605575v1

Investigation of genetic resistance to Viral Nervous Necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing

Christos Palaiokostas , Sophie Cariou , Anastasia Bestin , Jean-Sébastien Bruant , Pierrick Haffray
Aquaculture Europe 2016, Sep 2016, Edinburgh, United Kingdom
Communication dans un congrès hal-03155244v1

Prédicteurs morphologiques du rendement chez le bar: projet BAR3

Marc Vandeputte , Antonio Puledda , Anne Sophie Tyran , Anastasia Bestin , Céline Coulombet
Journée Technique Piscicole du Sysaaf, Feb 2016, Paris, France
Communication dans un congrès hal-02800398v1

Résistance génétique à l'entérite chez la truite ? Interaction avec la flavobactériose et les caractères de production

Anne-Sophie Tyran , Alexandre Desgranges , Anastasia Bestin , Florian Enez , François Allal
5. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2016, Paris, France
Communication dans un congrès hal-02743196v1
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Genotype by diet interactions on growth and processing traits in rainbow trout ([i]Oncorhynchus mykiss[/i]), European sea bass ([i]Dicentrarchus labrax[/i]), gilthead sea bream ([i]Sparus aurata[/i]) and meagre [i](Argyrosomus regius)[/i] fed diets with almost complete substitution of both fish meal and fish oil by vegetal ingredients

Anastasia Bestin , Mathilde Dupont-Nivet , Pierrick Haffray , Françoise Médale , Edwige Quillet
10. World Congress on Genetics Applied to Livestock Production (WCGALP), Aug 2014, Vancouver, Canada
Communication dans un congrès hal-01194150v1