Rafael Muñoz-Tamayo Research Director at the MoSAR team (INRAE)

Identifiants chercheurs

IdHAL :

rafael-munoz-tamayo

ORCID :

0000-0002-9266-4132

IdRef :

144256665

ResearcherID :

http://www.researcherid.com/rid/C-2483-2011

Présentation

I am a mathematical modeller of biological systems. I am from Colombia. I have an undergraduate in chemical engineering and a MSc automatic control degree from Universidad Nacional de Colombia. I did my PhD in applied mathematics at Université Paris-Sud (France).

I am a researcher at INRAE (France) in the MoSAR team since 2014. My research motivation is to develop a quantitative understanding of biological processes using modelling to combine and structure information across disciplines. My research project aims to enhance understanding of the dynamic interplay between the diet, the rumen microbiota and the ruminant animal via an interdisciplinary approach covering microbiology, chemistry, thermodynamics, animal nutrition, computational biology and mathematical modelling. My ultimate goal is to produce innovative model-based solutions to major challenges facing agriculture such as efficient ruminant production. I have an international path with significant experience in being the fulcrum in interdisciplinary projects within a network of more than 60 international scientists and 41 publications. I am strongly engaged in the open science movement with leading roles at institutional and international levels for enhancing open science practices and thus contributing to make open science the new normal. I am founder of the Open Science initiative Peer Community In ( PCI) Animal Science. For more information about my research please visit my web site.

Publications

Article dans une revue (38)

Réduction des émissions de méthane entérique chez les ruminants : enjeux, solutions et perspectives à l’échelle de l’animal et des systèmes d’élevage Florence Gondret,Donato Andueza,Mohamed Habibou Assouma,Valérie Berthelot,Didier Boichardet al. INRAE Productions Animales, 2026, 39 (1), pp.9470. ⟨10.20870/productions-animales.2026.39.1.9470⟩ Article dans une revue hal-05526674v1
Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae Asparagopsis taxiformis on rumen fermentation and methane production under in vitro continuous conditions Paul Blondiaux,Tristan Senga Kiessé,Maguy Eugène,Rafael Muñoz-Tamayo Peer Community In Animal Science, 2025, 5, pp.e126. ⟨10.19189/001c.143644⟩ Article dans une revue hal-05363255v1
Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae Asparagopsis taxiformis on rumen fermentation and methane production under in vitro continuous conditions Paul Blondiaux,Tristan Senga Kiessé,Maguy Eugène,Rafael Muñoz-Tamayo Peer Community Journal, 2025, 5, pp.e126. ⟨10.24072/pcjournal.644⟩ Article dans une revue hal-04628905v1
Desarrollo de un modelo dinámico mecanicista para predecir el crecimiento de cuyes (Cavia porcellus) machos del genotipo Perúcir el crecimiento de cuyes (Cavia porcellus) machos del genotipo Perú William Armando Tapie,Sandra Lucía Posada-Ochoa,Jaime Ricardo Rosero-Noguera,Rafael Muñoz-Tamayo Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 2024, 48, pp.859 - 870. ⟨10.18257/raccefyn.2997⟩ Article dans une revue hal-04912246v1
Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling Mohsen Davoudkhani,Francesco Rubino,Christopher J Creevey,Seppo Ahvenjärvi,Ali R Bayatet al. PLoS ONE, 2024, 19 (3), pp.e0298930. ⟨10.1371/journal.pone.0298930⟩ Article dans une revue hal-04558514v1
Disentangling the dynamics of energy allocation to provide a proxy of robustness in fattening pigs Guillaume Lenoir,Loïc Flatres-Grall,Rafael Muñoz-Tamayo,Ingrid David,Nicolas C Friggens Genetics Selection Evolution, 2023, 55 (1), pp.77. ⟨10.1186/s12711-023-00851-w⟩ Article dans une revue hal-03871410v2
Review: Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right? D.P. Morgavi,Gonzalo Cantalapiedra-Hijar,Maguy Eugène,Cécile Martin,Pierre Noziereet al. Animal, 2023, 17, pp.100830. ⟨10.1016/j.animal.2023.100830⟩ Article dans une revue (article de synthèse) hal-04174171v1
ASAS-NANP symposium: Mathematical Modeling in Animal Nutrition: The power of identifiability analysis for dynamic modeling in animal science:a practitioner approach Rafael Muñoz-Tamayo,Luis O Tedeschi Journal of Animal Science, 2023, 101, pp.1-13. ⟨10.1093/jas/skad320⟩ Article dans une revue hal-04302072v1
Review: Towards the next-generation models of the rumen microbiome for enhancing predictive power and guiding sustainable production strategies R. Muñoz-Tamayo,M. Davoudkhani,I. Fakih,C.E. Robles-Rodriguez,F. Rubinoet al. Animal, 2023, 17 (Suppl. 5), pp.100984. ⟨10.1016/j.animal.2023.100984⟩ Article dans une revue hal-04255485v1
Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium &lt;i&gt;Fibrobacter succinogenes&lt;/i&gt; S85 Ibrahim Fakih,Jeanne Got,Carlos Eduardo Robles-Rodriguez,Anne Siegel,Evelyne Foranoet al. mSystems, 2023, 8 (3), pp.1-23. ⟨10.1128/msystems.01027-22⟩ Article dans une revue hal-04131368v1
Animal board invited review: Quantification of resilience in farm animals M. Taghipoor,M. Pastell,Olivier Martin,Hieu Nguyen-Ba,Jaap J. van Milgenet al. Animal, 2023, 17 (9), pp.100925. ⟨10.1016/j.animal.2023.100925⟩ Article dans une revue (article de synthèse) hal-04214047v1
Dynamic data of body weight and feed intake in fattening pigs, and the determination of energetic allocation factors using a dynamic linear model Guillaume Lenoir,K. Kashefifard,C. Chesnet,Loïc Flatres-Grall,Rafael Munoz Tamayo Animal - Open Space, 2022, 1 (1), ⟨10.1016/j.anopes.2022.100014⟩ Article dans une revue hal-03747370v1
Seven steps to enhance Open Science practices in animal science Rafael Muñoz-Tamayo,Birte L Nielsen,Mohammed Gagaoua,Florence Gondret,E Tobias Krauseet al. PNAS Nexus, 2022, 1 (3), pp.1-6. ⟨10.1093/pnasnexus/pgac106⟩ Article dans une revue hal-03749515v1
Rumen microbial genomics: from cells to genes (and back to cells) Milka Popova,Ibrahim Fakih,Evelyne Forano,Anne Siegel,Rafael Muñoz-Tamayoet al. CAB Reviews Perspectives in Agriculture Veterinary Science Nutrition and Natural Resources, 2022, 2022, ⟨10.1079/cabireviews202217025⟩ Article dans une revue (article de synthèse) hal-03929845v1
Quantifying growth perturbations over the fattening period in swine via mathematical modelling Manuel Revilla,Guillaume Lenoir,Flatres-Grall Loïc,Rafael Munoz Tamayo,Nicolas C Friggens Peer Community Journal, 2022, 2, pp.e9. ⟨10.24072/pcjournal.82⟩ Article dans une revue hal-03545140v1
Predicting the dynamics of enteric methane emissions based on intake kinetic patterns in dairy cows fed diets containing either wheat or corn Rafael Munoz Tamayo,B. Ruiz,Pierre Blavy,Sylvie Giger-Reverdin,Daniel Sauvantet al. Animal - Open Space, 2022, 1 (1), pp.100003. ⟨10.1016/j.anopes.2021.100003⟩ Article dans une revue hal-03561639v1
Dynamic data for determining the accuracy of four open-circuit respiration chambers designed to quantify methane emissions from goats Ophelie Dhumez,Joseph-Alexandre J.-A. Tessier,Maguy Eugène,A.I. Martín-García,Alexandra Eymardet al. Animal - Open Space, 2022, 1 (1), pp.100006. ⟨10.1016/j.anopes.2022.100006⟩ Article dans une revue hal-03594433v1
Modelling the impact of the macroalgae &lt;i&gt;Asparagopsis taxiformis&lt;/i&gt; on rumen microbial fermentation and methane production Rafael Munoz Tamayo,Juana C Chagas,Mohammad Ramin,Sophie J Krizsan Peer Community Journal, 2021, 1, pp.e7. ⟨10.24072/pcjournal.11⟩ Article dans une revue hal-03545126v1
A parsimonious software sensor for estimating the individual dynamic pattern of methane emissions from cattle Rafael Munoz Tamayo,J. Ramírez Agudelo,R. Dewhurst,G. Miller,T. Vernonet al. Animal, 2019, 13 (06), pp.1180-1187. ⟨10.1017/S1751731118002550⟩ Article dans une revue hal-02369429v1
Towards the quantitative characterisation of piglets’ robustness to weaning: a modelling approach Manuel Revilla Sanchez,Nicolas N.C. Friggens,Laurent Broudiscou,Gaetan Lemonnier,Fany Blancet al. Animal, 2019, First view (11), pp.1-11. ⟨10.1017/S1751731119000843⟩ Article dans une revue hal-02192515v1
Hydrogenotrophic methanogens of the mammalian gut: Functionally similar, thermodynamically different—A modelling approach Rafael Munoz Tamayo,Milka Popova,Maxence Tillier,Diego Morgavi,Jean-Pierre Morelet al. PLoS ONE, 2019, 14 (12), pp.e0226243. ⟨10.1371/journal.pone.0226243⟩ Article dans une revue hal-02473686v1
On parameter interpretability of phenomenological-based semiphysical models in biology Laura Lema-Perez,Rafael Munoz Tamayo,Jose Garcia-Tirado,Hernan Alvarez Informatics in Medicine Unlocked, 2019, 15, pp.100158. ⟨10.1016/j.imu.2019.02.002⟩ Article dans une revue hal-02192507v1
Review: to be or not to be an identifiable model. Is this a relevant question in animal science modelling? Rafael Munoz Tamayo,Laurence Puillet,J. Daniel,Daniel Sauvant,Olivier Martinet al. Animal, 2018, 12 (04), pp.701 - 712. ⟨10.1017/S1751731117002774⟩ Article dans une revue (article de synthèse) hal-01526307v1
Modeling and optimization of lipid accumulation by Yarrowia lipolytica from glucose under nitrogen depletion conditions Carlos Robles Rodriguez,Rafael Munoz Tamayo,Carine Bideaux,Nathalie Gorret,Stéphane Guillouetet al. Biotechnology and Bioengineering, 2018, 115 (5), pp.1-15. ⟨10.1002/bit.26537⟩ Article dans une revue hal-01713779v1
Addressing global ruminant agricultural challenges through understanding the rumen microbiome: Past, present, and future Sharon A. Huws,Christopher J. Creevey,Linda B. Oyama,Itzhak Mizrahi,Stuart E. Denmanet al. Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02161⟩ Article dans une revue (article de synthèse) hal-01890696v1
Mechanistic modelling of in vitro fermentation and methane production by rumen microbiota Rafael Munoz Tamayo,Sylvie Giger-Reverdin,Daniel Sauvant Animal Feed Science and Technology, 2016, 220, pp.1-21. ⟨10.1016/j.anifeedsci.2016.07.005⟩ Article dans une revue hal-01349548v1
Reply to the Comment on “Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production” by Baroukh et al. [Curr. Opin. Biotechnol. 2015, 33:198–205] Caroline Baroukh,Rafael Munoz Tamayo,Olivier A. Bernard,Jean-Philippe Steyer Current Opinion in Biotechnology, 2016, 38, pp.200 - 202. ⟨10.1016/j.copbio.2016.02.018⟩ Article dans une revue istex hal-01410975v1
Adaptive control of light attenuation for optimizing microalgae production Francis Mairet,Rafael Munoz Tamayo,Olivier Bernard Journal of Process Control, 2015, 30, pp.117-124. ⟨10.1016/j.jprocont.2015.03.010⟩ Article dans une revue istex hal-01163455v1
A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard Metabolic Engineering, 2015, 30, pp.49-60. ⟨10.1016/j.ymben.2015.03.019⟩ Article dans une revue (article de synthèse) istex hal-01163453v1
Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production Caroline Baroukh,Rafael Munoz Tamayo,Olivier Bernard,Jean-Philippe Steyer Current Opinion in Biotechnology, 2015, 33, pp.198-205. ⟨10.1016/j.copbio.2015.03.002⟩ Article dans une revue (article de synthèse) istex hal-01163456v1
DRUM: A new framework for metabolic modeling under non-balanced growth. Application to the carbon metabolism of unicellular microalgae Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard PLoS ONE, 2014, 9 (8), pp.e104499. ⟨10.1371/journal.pone.0104499⟩ Article dans une revue hal-01123224v1
Getting the most out of it: optimal experiments for parameter estimation of microalgae growth models Rafael Munoz Tamayo,Pierre Martinon,Gaël Bougaran,Francis Mairet,Olivier Bernard Journal of Process Control, 2014, 24 (6), pp.991-1001. ⟨10.1016/j.jprocont.2014.04.021⟩ Article dans une revue hal-00998525v1
Optimizing microalgal production in raceway systems Rafael Munoz Tamayo,Francis Mairet,Olivier Bernard Biotechnology Progress, 2013, 29 (2), pp.543--552. ⟨10.1002/btpr.1699⟩ Article dans une revue hal-00850376v1
Modeling peptide formation during the hydrolysis of β-casein by Lactococcus lactis Rafael Munoz Tamayo,Jolan de Groot,Peter A. Wierenga,Harry Gruppen,Marcel H. Zwieteringet al. Process Biochemistry, 2012, 47 (1), pp.83-93. ⟨10.1016/j.procbio.2011.10.012⟩ Article dans une revue istex hal-02643666v1
Hydrolysis of β-casein by the cell-envelope-located PI-type protease of Lactococcus lactis: A modelling approach Rafael Munoz Tamayo,Jolan de Groot,Edwin Bakx,Peter A. Wierenga,Harry Gruppenet al. International Dairy Journal, 2011, 21 (10), pp.755-762. ⟨10.1016/j.idairyj.2011.03.012⟩ Article dans une revue istex hal-02648605v1
Kinetic modelling of lactate utilization and butyrate production by key human colonic bacterial species Rafael Munoz Tamayo,Béatrice Laroche,Eric Walter,Joel Dore,Sylvia Duncanet al. FEMS Microbiology Ecology, 2011, 76 (3), pp.615-624. ⟨10.1111/j.1574-6941.2011.01085.x⟩ Article dans une revue hal-00655932v1
Mathematical modelling of carbohydrate degradation by human colonic microbiota Rafael Munoz Tamayo,Béatrice Laroche,Eric Walter,Joel Doré,Marion Leclerc Journal of Theoretical Biology, 2010, 266 (1), pp.189-20. ⟨10.1016/j.jtbi.2010.05.040⟩ Article dans une revue istex hal-00521148v1
Towards the human intestinal microbiota phylogenetic core Julien Tap,Stanislas Mondot,Florence Levenez,Eric Pelletier,Christophe Caronet al. Environmental Microbiology, 2009, 11 (10), pp.2574-2584. ⟨10.1111/j.1462-2920.2009.01982.x⟩ Article dans une revue istex hal-02667864v1

Communication dans un congrès (40)

A theoretical optimal experiment design for accurate estimation of key parameters of a dynamic mechanistic model representing the effect of Asparagopsis taxiformis on rumen fermentation and methane production under in vitro continuous conditions Rafael Muñoz-Tamayo,Tristan Senga Kiessé,Maguy Eugène,Paul Blondiaux 11. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (Modnut 2025), Agroscope, Sep 2025, Engelberg, Switzerland. pp.456, ⟨10.1016/j.anscip.2025.07.285⟩ Communication dans un congrès hal-05372609v1
Use of a mechanistic model simulating in vitro rumen fermentation to evaluate the effect of nutritional strategies on rumen production and farm indices in intensive dairy farms E. Fiorbelli,A.S. Atzori,Rafael Muñoz-Tamayo,A. Gallo 11. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (Modnut 2025), Agroscope, Sep 2025, Engelberg, Switzerland. pp.458-459, ⟨10.1016/j.anscip.2025.07.288⟩ Communication dans un congrès hal-05372651v1
A conceptual model of the synergetic effect of combining the anti-methanogenic macroalgae Asparagopsis taxiformis with the hydrogen acceptor phloroglucinol: a strategy for methane mitigation with fermentation co-benefits for ruminants A. Roger,Milka Popova,D. Yañez-Ruiz,R. Muñoz-Tamayo 11. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (Modnut 2025), Agroscope, Sep 2025, Engelberg, Switzerland. pp.482-483, ⟨10.1016/j.anscip.2025.07.315⟩ Communication dans un congrès hal-05372639v1
Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae Asparagopsis taxiformis on methane production in a rumen in vitro continuous system Paul Blondiaux,Tristan Senga Kiessé,Maguy Eugène,Rafael Muñoz-Tamayo 75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Jan 2024, Florence, Italy. pp.329 Communication dans un congrès hal-04750366v1
Degré d'infection : Proposition d'un modèle pour prendre en compte le caractère dynamique de l'état de santé et le lien avec la résilience au travers de l'exemple d'une infection mammaire Pauline Martin,Gilles Foucras,Rafael Muñoz-Tamayo,Nicolas Friggens 27. Rencontres autour des recherches sur les ruminants (3R 2024), Institut de l'élevage [IDELE], INRAE, Dec 2024, Paris, France Communication dans un congrès hal-05109049v1
Exploring modelling approaches to address the dynamic nature of animal health Pauline Martin,Foucras G.,Rafael Muñoz-Tamayo,Nicolas N.C. Friggens 75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Sep 2024, Florence, Italy. pp.805 Communication dans un congrès hal-04777992v1
Using risk analysis to compare the accuracy of enteric methane emissions models of dairy cattle Paul Blondiaux,E.H. Cabezas-Garcia,Tristan Senga Kiessé,Rafael Muñoz-Tamayo,K.F. Reedet al. 75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Jan 2024, Florence, Italy. pp.329 Communication dans un congrès hal-04750397v1
Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right? D.P. Morgavi,Gonzalo Cantalapiedra-Hijar,Maguy Eugène,Cécile Martin,Pierre Noziereet al. International Symposium on Energy and Protein Metabolism and Nutrition (ISEP 2022), EAAP, Sep 2022, Granada, Spain. pp.100830 Communication dans un congrès hal-04174207v1
A dynamic mechanistic model of microbial fermentation and methane production in the cow rumen Rafael Munoz Tamayo,Seppo Ahvenjärvi,Ali Reza Bayat,Ilma Tapio ADSA Annual Meeting, ADSA, Jun 2023, Ottawa, Canada Communication dans un congrès hal-04181482v1
A dynamic in silico model of rumen microbial fermentation and methane production Rafael Munoz Tamayo,S. Ahvenjärvi,A.R. Bayat,I. Tapio 74. Annual meeting of the european federation of animal science (EAAP), INRAE; EAAP, Aug 2023, Lyon, France. pp.325 Communication dans un congrès hal-04199208v1
Peer Community In Animal Science: A free publication model for transparent and open science Rafael Munoz Tamayo,Mohammed Gagaoua,Florence Gondret,M. Hess,Diego Morgaviet al. 2022 ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma City, United States. pp.80-81, ⟨10.1093/jas/skac247.158⟩ Communication dans un congrès hal-04138498v1
The power of theoretical and practical identifiability analysis for modeling (micro-) biological processes Rafael Munoz Tamayo ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma, United States. pp.33 Communication dans un congrès hal-03748944v1
Towards the characterisation of animal robustness by dynamic energy allocation indicators in fattening pigs Guillaume Lenoir,Rafael Munoz Tamayo,Loïc Flatres-Grall,Ingrid David,Nicolas N.C. Friggens WCGALP 2022, Jul 2022, Rotterdam, Netherlands Communication dans un congrès hal-03725117v1
Sensitivity analysis of a mechanistic model of the rumen in-vitro fermentation: Study of the impact of 3 sampling methods on Sobol indices of accuracy Paul Blondiaux,Tristan Senga Kiessé,Maguy Eugène,Rafael Muñoz-Tamayo Modelling Nutrient Digestion and Utilization in Farm Animals (MODNUT), Sep 2022, Alghero, Italy. pp.532-533, ⟨10.1016/j.anscip.2022.07.411⟩ Communication dans un congrès hal-04396965v1
Genome-scale network reconstruction of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85 Fakih Ibrahim,Jeanne Got,Anne Siegel,Evelyne Forano,Rafael Munoz Tamayo 2021 - 12th International Symposium on Gut Microbiology, INRAE ; Rowett Institute UK, Oct 2021, En ligne, France. pp.1 P; Communication dans un congrès hal-03402155v1
The shades of gray in model building and its opportunities for precision livestock farming Rafael Munoz Tamayo 72. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2021, Davos, Switzerland Communication dans un congrès hal-03347173v1
Combining a process-based model of rumen fermentation with methane production data from respiration chambers Helen Kettle,Rafael Munoz Tamayo,R.J. Dewhurst 75. Annual Conference of the British Society of Animal Science (BSAS), Apr 2019, Edinburgh, United Kingdom. ⟨10.1017/S2040470019000013⟩ Communication dans un congrès hal-02193900v1
How complex does a mathematical model need to be to describe the dynamics of methane production in cattle? Rafael Munoz Tamayo,Helen Kettle,Baptiste Ruiz,Richard Williams,Peter J. Moateet al. 9. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (Modnut), Sep 2019, Ubatuba, Brazil Communication dans un congrès hal-02790648v1
Predictive capabilities of a dynamic mechanistic model of in vitro fermentation by rumen microbiota Rafael Munoz Tamayo,Alberto Stanislao Atzori,Antonello Cannas,Francesco Masoero,Sylvie Giger-Reverdinet al. 61. Annual Meeting of the European Associationfor Animal Production (EAAP), 2019, NA, France Communication dans un congrès hal-02193905v1
Assessing the predictive capabilities of a dynamic mechanistic model of in vitro rumen fermentation and methane production Rafael Muñoz-Tamayo,Alberto Stanislao Atzori,Antonello Cannas,Francesco Masoero,Sylvie Giger-Reverdinet al. 9. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (MODNUT), Sep 2019, Ubatuba, Brazil. pp.320, ⟨10.1017/S2040470019000025⟩ Communication dans un congrès hal-04485501v1
Tous les modèles doivent-ils être identifiables ? Rafael Munoz Tamayo,Pierre Blavy,Laurence Puillet,Olivier Martin,Jean-Baptiste Danielet al. Journées Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France. pp.1 Communication dans un congrès hal-01840968v1
Multivariate and network analysis identified microbial biomarkers linked to methane emission Yuliaxis Ramayo Caldas,Aurélien Bernard,Laura M. Zingaretti,Milka Popova,Núria Machet al. 69. Annual Meeting of the European Federation of Animal Science, European Federation of Animal Science, Aug 2018, Dubrovnik, Croatia Communication dans un congrès hal-02881487v1
Towards a quantitative characterization of robustness of piglets at weaning period: An animal growth modelling approach Rafael Munoz Tamayo,Manuel Revilla Sanchez,Nicolas N.C. Friggens,Laurent Broudiscou,Gaetan Lemonnieret al. Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France Communication dans un congrès hal-01840967v1
Rumen methanogens display species-specific energetic and growth dynamics: a thermodynamic and kinetic based modelling approach Rafael Munoz Tamayo,Milka Popova,Diego Morgavi,Dominique Graviou,Jean-Pierre Morelet al. Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France Communication dans un congrès hal-01840971v1
Identification of microbial taxa linked to methane emission in Holstein and Charolais cattle by an integrative approach Yuliaxis Ramayo Caldas,Aurélien Bernard,Laura Zingaretti,Milka Popova,Núria Machet al. Gut Microbiology: No longer the forgotten organ - 11. INRA-Rowett Symposium, Jun 2018, Aberdeen, United Kingdom Communication dans un congrès hal-02738326v1
A new approach to unravel metabolic regulations. Application to microalgae growth and lipid production under day/night cycles and nitrogen starvation Caroline Baroukh,Olivier Bernard,Jean-Philippe Steyer,Rafael Munoz Tamayo,Benoit Chachuat BioSynSys 2015 : 1er colloque du GDR "Biologie de Synthèse et des Systèmes", Sep 2015, Paris, France Communication dans un congrès hal-01601441v1
Metabolic modeling of microalgae growth and lipids production during day/night cycles and nitrogen starvation Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal Communication dans un congrès hal-01603450v1
Model-based optimization of lipid production by the oleaginous yeast Yarrowia lipolytica Rafael Muñoz-Tamayo,Abril Ochoa Estopier,Stéphane Guillouet,Carole Molina-Jouve,C. Bideauxet al. 10. European Symposium on Biochemical Engineering Sciences, Sep 2014, Lille, France Communication dans un congrès hal-05004228v1
Optimization of lipid production by oleaginous yeast in continuous culture Rafael Munoz Tamayo,Cesar Arturo Aceves-Lara,Carine Bideaux 19. World Congress of the International Federation of Automatic Control, Aug 2014, Cape Town, South Africa Communication dans un congrès hal-01268860v1
Design of Optimal Experiments for Parameter Estimation of Microalgae Growth Models Rafael Munoz Tamayo,Pierre Martinon,Gaël Bougaran,Francis Mairet,Olivier Bernard International Symposium on Computer Applications to Biotechnology (CAB 2013), Dec 2013, Mumbai, India Communication dans un congrès hal-00856749v1
A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard CAB 2013 - International on Computer Applications to Biotechnology, Dec 2013, Mumbai, India Communication dans un congrès hal-00856042v2
A new framework for metabolic modelling under non-balanced growth. Application to photoautotrophic microalgae in day/night cycle. Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom Communication dans un congrès hal-01601779v1
Adaptive control for optimizing microalgae production Francis Mairet,Rafael Munoz Tamayo,Olivier Bernard Computer Application in Biotechnology (CAB2013), Dec 2013, Mumbai, India Communication dans un congrès hal-00921486v1
Driving Species Competition in a Light-limited Chemostat Francis Mairet,Rafael Munoz Tamayo,Olivier Bernard 9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Sep 2013, Toulouse, France Communication dans un congrès hal-00852258v1
Driving microalgal production in raceway systems to near optimal productivities. Rafael Munoz Tamayo,Francis Mairet,Olivier Bernard European Control Conference (ECC13), Jul 2013, Zurich, Switzerland Communication dans un congrès hal-00852259v1
A closed-loop controller for optimizing nitrogen removal in a microalgal outdoor pond Rafael Munoz Tamayo,Francis Mairet,Olivier Bernard 11. IWA Conference on Instrumentation Control and Automation, Sep 2013, Narbonne, France Communication dans un congrès hal-02747879v1
IDEAS: a parameter identification toolbox with symbolic analysis of uncertainty and its application to biological modelling Rafael Munoz Tamayo,Béatrice Laroche,Marion Leclerc,Eric Walter 15. IFAC Symposium on System Identication (SYSID 2009), Jul 2009, Saint Malo, France. ⟨10.3182/20090706-3-FR-2004.00211⟩ Communication dans un congrès hal-01204242v1
Modelling and identification of in vitro homoacetogenesis by human-colon bacteria Rafael Munoz Tamayo,Béatrice Laroche,Marion Leclerc,Eric Walter 16. Mediterranean Conference on Control and Automation, 2008, Ajaccio, France Communication dans un congrès hal-01204248v1
Control of a bioreactor using feedback linearization Fabiola Angulo,Rafael Munoz Tamayo,Gerard Olivar 2007 Mediterranean Conference on Control & Automation (MED 2007), Jun 2007, Athènes, Greece. ⟨10.1109/MED.2007.4433763⟩ Communication dans un congrès hal-02755197v1
Human colon: a complex bioreactor. Conceptual modelling for the anaerobic digestion of the functional trophic chain Rafael Munoz Tamayo,Béatrice Laroche,Marion Leclerc 11. World Congress on Anaerobic Digestion, Sep 2007, Brisbane, Australia. 6 p Communication dans un congrès hal-01204246v1

Chapitre d'ouvrage (1)

Breve elogio a la lentitud en ciencia Rafael Munoz Tamayo Ciencia y Humanismo 50 años Revista Aleph (1996-2016), Carlos Enrique Ruiz, 594 p., 2016, 978-958-8730-75-2 Chapitre d'ouvrage hal-02797416v1

Autre publication scientifique (2)

Initier les primaires aux sciences animales Alicia Jacques,Rafael Muñoz-Tamayo,Christelle Loncke 2025, ⟨10.5281/zenodo.15845533⟩ Autre publication scientifique hal-05386022v1
IDEAS Rafael Munoz Tamayo,Béatrice Laroche,Eric Walter,Marion Leclerc 2009 Autre publication scientifique hal-01204255v1

Pré-publication, Document de travail (17)

A theoretical optimal experiment for accurate parameter estimation of a dynamic rumen model representing the Asparagopsis taxiformis effect on in vitro methane production Rafael Muñoz-Tamayo,Maguy Eugène 2026 Pré-publication, Document de travail hal-05601183v1
Evaluation of the precision and accuracy of models of enteric methane emissions from ruminants using Bayesian inference Paul Blondiaux,Edward Hernando Cabezas-Garcia,Tristan Senga Kiessé,Rafael Muñoz-Tamayo,Kristan Foster Reedet al. 2025 Pré-publication, Document de travail hal-04988924v1
Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling Mohsen Davoudkhani,Francesco Rubino,Christopher J Creevey,Seppo Ahvenjärvi,Ali R Bayatet al. 2023 Pré-publication, Document de travail hal-04253680v1
Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium&lt;i&gt;Fibrobacter succinogenes&lt;/i&gt;S85 Ibrahim Fakih,Jeanne Got,Carlos Eduardo Robles-Rodriguez,Anne Siegel,Evelyne Foranoet al. 2022 Pré-publication, Document de travail hal-03871397v1
Towards the next generation models of the rumen microbiome for enhancing predictive power and guiding sustainable production strategies Rafael Munoz Tamayo,Mohsen Davoudkhani,Ibrahim Fakih,C.E. Robles Rodriguez,Francesco Rubinoet al. 2022 Pré-publication, Document de travail hal-03871472v1
Seven steps to enhance open science practices in animal science Rafael Munoz Tamayo,Birte L Nielsen,Mohammed Gagaoua,Florence Gondret,E Tobias Krauseet al. 2022 Pré-publication, Document de travail (preprint/prepublication) hal-03544902v2
The power of identifiability analysis for dynamic modeling in animal science: A practitioner approach Rafael Munoz Tamayo,Luis O. Tedeschi 2022 Pré-publication, Document de travail (preprint/prepublication) hal-03878727v1
Intake time as potential predictor of methane emissions from cattle. John F. Ramirez-Agudelo,Carlos S. Escobar-Restrepo,Rafael Munoz Tamayo,Sandra L. Posada-Ochoa,Ricardo Rosero-Noguera 2022 Pré-publication, Document de travail (preprint/prepublication) hal-03604356v1
A filtering algorithm for accurate determination of feed intake dynamics Pierre Blavy,O Dhumez,B L Nielsen,Rafael Munoz Tamayo,Nicolas N.C. Friggenset al. 2020 Pré-publication, Document de travail hal-02959928v1
Quantifying growth perturbations over the fattening period in swine via mathematical modelling Manuel Revilla,Guillaume Lenoir,Loïc Flatres-Grall,Rafael Munoz Tamayo,Nicolas C Friggens 2021 Pré-publication, Document de travail (preprint/prepublication) hal-03346812v1
Modelling the impact of the macroalgae Asparagopsis taxiformis on rumen microbial fermentation Rafael Munoz Tamayo,Juana Chagas,Mohammad Ramin,Sophie J. Krizsan 2020 Pré-publication, Document de travail hal-03024873v1
A brief tribute to slowness in science * Rafael Munoz Tamayo 2019 Pré-publication, Document de travail hal-02369434v1
Towards the quantitative characterization of piglets' robustness to weaning: A modelling approach Manuel Revilla,Nicolas N.C. Friggens,Laurent Broudiscou,G. Lemonnier,F. Blancet al. 2018 Pré-publication, Document de travail (preprint/prepublication) hal-02369432v1
On Parameter Interpretability of Phenomenological-Based Semiphysical Models Laura Lema Perez,Rafael Munoz Tamayo,Jose Fernando Garcia Tirado,Hernan Alvarez 2018 Pré-publication, Document de travail (preprint/prepublication) hal-02788220v1
Hydrogenotrophic methanogens of the mammalian gut: functionally similar, thermodynamically different -A modelling approach Rafael Munoz Tamayo,Milka Popova,Maxence Tillier,Diego Morgavi,Gérard Fontyet al. 2018 Pré-publication, Document de travail (preprint/prepublication) hal-02369430v1
A brief tribute to slowness in science Rafael Munoz Tamayo 2018 Pré-publication, Document de travail (preprint/prepublication) hal-02786714v1
A parsimonious software sensor for estimating the individual dynamic pattern of methane emissions from cattle Rafael Munoz Tamayo,J F Ramírez Agudelo,R. Dewhurst,G Miller,T Vernonet al. 2018 Pré-publication, Document de travail (preprint/prepublication) hal-02369431v1

Rapport (1)

Pratiques intègres de publication scientifique à l’heure de la science ouverte. Note de recommandations Sabine Arbeille,Denis Bourguet,Regina Dashkina,Philippe Delcros,Erwin Dreyeret al. INRAE. 2025, 12 pp Rapport hal-04964196v1

Thèse (1)

Modélisation mathématique de la dégradation des hydrates de carbone dans le côlon humain Rafael Munoz Tamayo Mathématiques [math]. Université Paris Sud - Paris 11, 2010. Français. ⟨NNT : ⟩ Thèse tel-02822888v1

HDR (1)

A modelling odyssey in the tree of life Rafael Munoz Tamayo Modeling and Simulation. Université Paris Sud (Paris 11), 2019 HDR tel-02183063v1