Ralf Koebnik

Identifiants chercheurs

IdHAL :

ralf-koebnik

ORCID :

0000-0002-4419-0542

IdRef :

150035969

ResearcherID :

http://www.researcherid.com/rid/J-5627-2014

Publications

Article dans une revue (141)

Large- and small-scale population structure of Xanthomonas oryzae pv. oryzicola, a bacterial pathogen of rice Anne Sicard,Sara Carpenter,Amadou Diallo,Shivranjani Baruah,Cheick Teketeet al. Applied and Environmental Microbiology, 2025, 91 (10), ⟨10.1128/aem.01121-25⟩ Article dans une revue hal-05248727v1
Effectidor II: a pan-genomic AI-based algorithm for the prediction of type III secretion system effectors Naama Wagner,Ella Baumer,Iris Lyubman,Yair Shimony,Noam Brachaet al. Bioinformatics, 2025, 41 (5), pp.btaf272. ⟨10.1093/bioinformatics/btaf272⟩ Article dans une revue hal-05516347v1
Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads Ralf Koebnik,Sophie Cesbron,Nicolas W. G. Chen,Marion Fischer-Le Saux,Mathilde Hutinet al. Peer Community Journal, 2024, 4, pp.e19. ⟨10.24072/pcjournal.385⟩ Article dans une revue ird-04483657v1
Evolutionary and Epidemiological Insights from Historical and Modern Genomes of &lt;i&gt;Xanthomonas oryzae&lt;/i&gt; pv. &lt;i&gt;oryzicola&lt;/i&gt;, the Causal Agent of Bacterial Leaf Streak of Rice Mathilde Hutin,Sara Carpenter,Shivrajani Baruah,Paola Campos,Karine Boyeret al. Molecular Plant-Microbe Interactions, 2024, 37, pp.814 - 818. ⟨10.1094/mpmi-05-24-0062-sc⟩ Article dans une revue hal-04868054v1
Draft genome sequence of &lt;i&gt;Xanthomonas arboricola&lt;/i&gt; pv. pruni PVCT 262.1 isolated from &lt;i&gt;Prunus dulcis&lt;/i&gt; in italy Giulio Dimaria,Alexandros Mosca,Marcella Russo,Jaime Cubero,Joël F Pothieret al. Microbiology Resource Announcements, 2024, 13 (7), pp.e00273-24. ⟨10.1128/mra.00273-24⟩ Article dans une revue hal-04629914v1
Comparative transcriptomics reveals a highly polymorphic Xanthomonas HrpG virulence regulon Thomas Quiroz Monnens,Brice Roux,Sebastien Cunnac,Erika Charbit,Sébastien Carrereet al. BMC Genomics, 2024, 25, pp.777. ⟨10.1186/s12864-024-10684-6⟩ Article dans une revue hal-04670942v1
A Community-Curated DokuWiki Resource on Diagnostics, Diversity, Pathogenicity and Genetic Control of Xanthomonads Joana Costa,Joël F Pothier,Eran Bosis,Jens Boch,Roland Köllikeret al. Molecular Plant-Microbe Interactions, 2024, 37 (3), pp.166-353. ⟨10.1094/MPMI-11-23-0184-FI⟩ Article dans une revue ird-04483595v1
Complete genome sequencing of three clade-1 xanthomonads reveals genetic determinants for a lateral flagellin and the biosynthesis of coronatine-like molecules in Xanthomonas Chloé Peduzzi,Angeliki Sagia,Daiva Burokienė,Ildikó Katalin Nagy,Marion Fischer-Le Sauxet al. Phytopathology, 2023, 113 (7), pp.1185-1191. ⟨10.1094/phyto-10-22-0373-sc⟩ Article dans une revue hal-03978256v1
CRISPRi in Xanthomonas demonstrates functional convergence of transcription activator‐like effectors in two divergent pathogens Carlos Andrés Zárate-Chaves,Corinne Audran,César Augusto Medina Culma,Aline Escalon,Stéphanie Javegnyet al. New Phytologist, 2023, 238 (4), pp.1593-1604. ⟨10.1111/nph.18808⟩ Article dans une revue hal-04058189v1
PM 7/44 (2) Xanthomonas citri pv. citri and Xanthomonas citri pv. aurantifolii Olivier Pruvost,Isabelle Robène,Aude Chabirand,Ralf Koebnik,Vittoria Cataraet al. EPPO Bulletin, 2023, 53 (1), pp.62-96. ⟨10.1111/epp.12913⟩ Article dans une revue ird-04498414v1
High genomic plasticity and unique features of Xanthomonas translucens pv. graminis revealed through comparative analysis of complete genome sequences Florian Goettelmann,Ralf Koebnik,Veronica Roman-Reyna,Bruno Studer,Roland Kölliker BMC Genomics, 2023, 24 (1), pp.741. ⟨10.1186/s12864-023-09855-8⟩ Article dans une revue ird-04483681v1
Integrating Science on Xanthomonas and Xylella for Integrated Plant Disease Management Joana Costa,Joël F Pothier,Jens Boch,Emilio Stefani,Ralf Koebnik Microorganisms, 2023, 11 (1), pp.6. ⟨10.3390/microorganisms11010006⟩ Article dans une revue ird-03967356v1
A minisatellite-based MLVA for deciphering the global epidemiology of the bacterial cassava pathogen Xanthomonas phaseoli pv. manihotis Leidy Rache,Laurence Blondin,Paula Diaz Tatis,Carolina Flores,Andrea Camargoet al. PLoS ONE, 2023, 18 (5), pp.e0285491. ⟨10.1371/journal.pone.0285491⟩ Article dans une revue hal-04292499v1
Comparative Genomics Identifies Conserved and Variable TAL Effectors in African Strains of the Cotton Pathogen Xanthomonas citri pv. malvacearum Alvaro Luis Perez Quintero,Luis Rodriguez-R,Sara Cuesta-Morrondo,Eliška Hakalová,Daniela Betancurt-Anzolaet al. Phytopathology, 2023, 113 (8), pp.1387-1393. ⟨10.1094/PHYTO-12-22-0477-SC⟩ Article dans une revue hal-04276735v1
Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing Annett Erkes,René P Grove,Milena Žarković,Sebastian Krautwurst,Ralf Koebniket al. BMC Genomics, 2023, 24, pp.151. ⟨10.1186/s12864-023-09228-1⟩ Article dans une revue hal-04532327v1
Taxonomic Refinement of Xanthomonas arboricola Sadegh Zarei,S. Mohsen Taghavi,Touraj Rahimi,Hamzeh Mafakheri,Neha Potniset al. Phytopathology, 2022, 118 (8), pp.1630-1639. ⟨10.1094/phyto-12-21-0519-r⟩ Article dans une revue hal-03623139v1
Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri—Witnesses to a Global Expansion of a Bacterial Pathogen over Time Ninon Bellanger,Alexis Dereeper,Ralf Koebnik Microorganisms, 2022, 10 (9), ⟨10.3390/microorganisms10091715⟩ Article dans une revue hal-03813531v1
Complete Genome Sequence Resource for Xanthomonas translucens pv. undulosa MAI5034, a Wheat Pathogen from Uruguay Felipe Clavijo,Claudia Barrera,Aleksander Benčič,Valentina Croce,Jonathan Jacobset al. Phytopathology, 2022, 112 (9), pp.2036-2039. ⟨10.1094/phyto-01-22-0025-a⟩ Article dans une revue hal-03717518v1
Complete Genome Assemblies of All Xanthomonas translucens Pathotype Strains Reveal Three Genetically Distinct Clades Florian Goettelmann,Veronica Roman-Reyna,Sébastien Cunnac,Jonathan Jacobs,Claude Bragardet al. Frontiers in Microbiology, 2022, 12, pp.817815. ⟨10.3389/fmicb.2021.817815⟩ Article dans une revue hal-03626316v1
Phenotypic and Molecular-Phylogenetic Analyses Reveal Distinct Features of Crown Gall-Associated Xanthomonas Strains Hamzeh Mafakheri,S. Mohsen Taghavi,Sadegh Zarei,Touraj Rahimi,Mohammad Sadegh Hasannezhadet al. Microbiology Spectrum, 2022, 10 (1), 18 p. ⟨10.1128/spectrum.00577-21⟩ Article dans une revue hal-03576592v1
Xanthomonas bonasiae sp. nov. and Xanthomonas youngii sp. nov., isolated from crown gall tissues Hamzeh Mafakheri,S. Mohsen Taghavi,Sadegh Zarei,Perrine Portier,Ivica Dimkićet al. International Journal of Systematic and Evolutionary Microbiology, 2022, 72 (6), pp.005418. ⟨10.1099/ijsem.0.005418⟩ Article dans une revue hal-03728267v1
Complete Genome Sequence of Xanthomonas campestris pv. campestris SB80, a Race 4 Strain Isolated from White Head Cabbage in Turkey Songül Erken Meral,Shaheen Bibi,Carlos Andrés Díaz Rodríguez,Jelena Menković,Adriana Bernalet al. Microbiology Resource Announcements, 2022, 11 (3), pp.e00022-22. ⟨10.1128/mra.00022-22⟩ Article dans une revue hal-03626321v1
Editorial: Population and comparative genomics of plant pathogenic bacteria Sujan Timilsina,Erica M Goss,Ralf Koebnik,Neha Potnis,Jeffrey Jones Frontiers in Microbiology, 2022, 13, ⟨10.3389/fmicb.2022.1012034⟩ Article dans une revue hal-03813550v1
Xanthomonas hortorum – beyond gardens: Current taxonomy, genomics, and virulence repertoires Nay C Dia,Lucas Moriniere,Bart Cottyn,Eduardo Bernal,Jonathan M Jacobset al. Molecular Plant Pathology, 2022, 23 (5), pp.597-621. ⟨10.1111/mpp.13185⟩ Article dans une revue hal-03559066v1
Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe Joana Costa,Joël Pothier,Jens Boch,Emilio Stefani,Marie-Agnès Jacqueset al. Molecular Plant Pathology, 2021, 22 (12), pp.1461-1463. ⟨10.1111/mpp.13150⟩ Article dans une revue hal-03521764v1
Development of two loop-mediated isothermal amplification (LAMP) genomics-informed diagnostic protocols for rapid detection of Pantoea species on rice Kossi Kini,Issa Wonni,Drissa Silué,Ralf Koebnik MethodsX, 2021, 8, pp.101216. ⟨10.1016/j.mex.2021.101216⟩ Article dans une revue hal-03626200v1
Genomics-Informed Multiplex PCR Scheme for Rapid Identification of Rice-Associated Bacteria of the Genus Pantoea Kossi Kini,Raoul Agnimonhan,Rachelle Dossa,Drissa Silué,Ralf Koebnik Plant Disease, 2021, 105 (9), pp.2389-2394. ⟨10.1094/PDIS-07-20-1474-RE⟩ Article dans une revue hal-03510899v1
The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads Ralf Koebnik,Daiva Burokiene,Claude Bragard,Christine Chang,Marion Fischer-Le Sauxet al. Phytopathology, 2021, 111 (4), pp.611-616. ⟨10.1094/PHYTO-07-20-0273-SC⟩ Article dans une revue hal-02976163v1
An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection Ganna Reshetnyak,Jonathan M Jacobs,Florence Auguy,Coline Sciallano,Lisa Claudeet al. Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-03391-9⟩ Article dans une revue hal-03514038v1
Molecular Epidemiology of Xanthomonas euvesicatoria Strains from the Balkan Peninsula Revealed by a New Multiple-Locus Variable-Number Tandem-Repeat Analysis Scheme Taca Vancheva,Nevena Bogatzevska,Penka Moncheva,Sasa Mitrev,Christian Vernièreet al. Microorganisms, 2021, 9 (3), pp.536. ⟨10.3390/microorganisms9030536⟩ Article dans une revue hal-03205487v1
Trends in Molecular Diagnosis and Diversity Studies for Phytosanitary Regulated Xanthomonas Vittoria Catara,Jaime Cubero,Joël Pothier,Eran Bosis,Claude Bragardet al. Microorganisms, 2021, 9 (4), pp.862. ⟨10.3390/microorganisms9040862⟩ Article dans une revue (article de synthèse) hal-03217200v1
The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought Paola A. Zuluaga,Przemyslaw Bidzinski,Emilie Chanclud,Aurélie Ducasse,Bastien Cayrolet al. Frontiers in Plant Science, 2020, 11, pp.1265. ⟨10.3389/fpls.2020.01265⟩ Article dans une revue hal-02927839v1
Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso Martine Bangratz,Issa Wonni,Kossi Kini,Moussa Sondo,Christophe Brugidouet al. PLoS ONE, 2020, 15 (4), pp.e0232115. ⟨10.1371/journal.pone.0232115⟩ Article dans une revue hal-03626192v1
High-Quality Genome Resource of Xanthomonas hyacinthi Generated via Long-Read Sequencing Stephen P. Cohen,Emily K. Luna,Jillian M. Lang,Janet Ziegle,Christine Changet al. Plant Disease, 2020, pp.PDIS-11-19-2393. ⟨10.1094/PDIS-11-19-2393-A⟩ Article dans une revue (data paper) hal-02624813v1
Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium Albin Teulet,Djamel Gully,Zoe Rouy,Alicia Camuel,Ralf Koebniket al. Microbial Genomics, 2020, 6 (9), ⟨10.1099/mgen.0.000407⟩ Article dans une revue hal-03127250v1
Genome Resource of Barley Bacterial Blight and Leaf Streak Pathogen Xanthomonas translucens pv. translucens strain UPB886 Verónica Roman-Reyna,Emily Luna,Céline Pesce,Taca Vancheva,Christine Changet al. Plant Disease, 2020, 104 (1), pp.13-15. ⟨10.1094/PDIS-05-19-1103-A⟩ Article dans une revue hal-03626188v1
Genome resources of three west African strains of Pantoea ananatis causing bacterial blight and grain discoloration of rice Kossi Kini,Pierre Lefeuvre,Lucie Poulin,Drissa Silué,Ralf Koebnik Phytopathology, 2020, 110 (9), pp.1500-1502. ⟨10.1094/PHYTO-03-20-0091-A⟩ Article dans une revue hal-03626195v1
Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles Gluck-Thaler, Emile,A. Cerruti,Alvaro L. Pérez-Quintero,Roman-Reyna, Veronica,Madhavan, Vishnuet al. Science Advances , 2020, 6 (46), ⟨10.1126/sciadv.abc4516⟩ Article dans une revue hal-03177564v1
First Report of Bacterial Blight of Peony Caused by Xanthomonas hortorum in Ohio T. Klass,J. Long,J. Summers,V. Roman-Reyna,R. Koebniket al. Plant Disease, 2019, 103 (11), pp.2940. ⟨10.1094/PDIS-05-19-1123-PDN⟩ Article dans une revue hal-03626180v1
Ebb and flow of vascular pathogenesis through repeated gain E. Gluck-Thaler,Aude Cerutti,A.L. Perez Quintero,C. Pesce,Alain Jauneauet al. Molecular Plant-Microbe Interactions, 2019, 32 (10S), p. S1.22 Article dans une revue hal-05177410v1
CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen &lt;i&gt;Xanthomonas citri&lt;/i&gt; pv. &lt;i&gt;citri&lt;/i&gt; Kwanho Jeong,Alejandra Muñoz-Bodnar,Nathalia Arias Rojas,Lucie Poulin,Luis Miguel Rodriguez-Ret al. BMC Genomics, 2019, 20 (1), pp.1-19. ⟨10.1186/s12864-019-6267-z⟩ Article dans une revue hal-02403788v1
A semi-selective medium to isolate and identify bacteria of the genus Pantoea Kossi Kini,Rachelle Dossa,Bernadin Dossou,Mariame Mariko,Ralf Koebniket al. Journal of General Plant Pathology, 2019, 85 (6), pp.424-427. ⟨10.1007/s10327-019-00862-w⟩ Article dans une revue hal-03626176v1
Addressing the New Global Threat of Xylella fastidiosa R. Almeida,L. de La Fuente,R. Koebnik,J. Lopes,S. Parnellet al. Phytopathology, 2019, 109 (2), pp.172-174. ⟨10.1094/PHYTO-12-18-0488-FI⟩ Article dans une revue hal-03626149v1
An Optimized Microsatellite Scheme for Assessing Populations of Xanthomonas phaseoli pv. manihotis Leidy Rache,Laurence Blondin,Carolina Flores,Cesar Trujillo,Boris Szureket al. Phytopathology, 2019, 109 (5), pp.859-869. ⟨10.1094/PHYTO-06-18-0210-R⟩ Article dans une revue hal-02617945v1
A Pathovar of Xanthomonas oryzae Infecting Wild Grasses Provides Insight Into the Evolution of Pathogenicity in Rice Agroecosystems Jillian Lang,Alvaro Pérez-Quintero,Ralf Koebnik,Elysa Ducharme,Soungalo Sarraet al. Frontiers in Plant Science, 2019, 10, pp.507. ⟨10.3389/fpls.2019.00507⟩ Article dans une revue hal-03626158v1
A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane Nuria Gómez-Santos,Timo Glatter,Ralf Koebnik,Magdalena Anna Świątek-Połatyńska,Lotte Søgaard-Andersen Nature Communications, 2019, 10 (1), pp.1360. ⟨10.1038/s41467-019-09366-9⟩ Article dans une revue hal-03626151v1
Molecular Typing Reveals High Genetic Diversity of Xanthomonas translucens Strains Infecting Small-Grain Cereals in Iran Moein Khojasteh,S. Mohsen Taghavi,Pejman Khodaygan,Habiballah Hamzehzarghani,Gongyou Chenet al. Applied and Environmental Microbiology, 2019, 85 (20), ⟨10.1128/AEM.01518-19⟩ Article dans une revue hal-03626171v1
Isolation of atypical wheat-associated xanthomonads in Algeria Bahria Khenfous-Djebari,Marion Fischer-Le Saux,Mohamed Kerkoud,Traki Benhassine,Zouazi Bouznadet al. Phytopathologia Mediterranea, 2019, 58 (3), pp.497-506. ⟨10.13128/Phyto-10855⟩ Article dans une revue hal-02971104v1
The rhizobial type III effector ErnA confers the ability to form nodules in legumes Albin Teulet,Nicolas Busset,Joël Fardoux,Djamel Gully,Clémence Chaintreuilet al. Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (43), pp.21758-21768. ⟨10.1073/pnas.1904456116⟩ Article dans une revue hal-02318403v1
Pathogenicity and phylogenetic analysis of Clavibacter michiganensis strains associated with tomato plants in Iran Ebrahim Osdaghi,Muhammad Sajjad Ansari,Seyed Mohsen Taghavi,Sina Zarei,Ralph Koebniket al. Plant Pathology, 2018, 67 (4), pp.957-970. ⟨10.1111/ppa.12801⟩ Article dans une revue hal-02623769v1
Multilocus sequence analysis reveals a novel phylogroup of Xanthomonas euvesicatoria pv. perforans causing bacterial spot of tomato in Iran Ebrahim Osdaghi,Seyed Mohsen Taghavi,Ralf Koebnik,Jay Ram Lamichhane Plant Pathology, 2018, 67 (7), pp.1601-1611. ⟨10.1111/ppa.12864⟩ Article dans une revue hal-02621197v1
Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice Tuan Tran,Alvaro Pérez-Quintero,Issa Wonni,Sara Carpenter,Yanhua Yuet al. PLoS Pathogens, 2018, 14 (6), pp.e1007092. ⟨10.1371/journal.ppat.1007092⟩ Article dans une revue hal-03626132v1
Enterobacter cloacae, an Emerging Plant-Pathogenic Bacterium Affecting Chili Pepper Seedlings Tanahiri García-González,Hilda Karina Sáenz-Hidalgo,Hilda Victoria Silva-Rojas,Carlos Morales-Nieto,Taca Vanchevaet al. Plant Pathology Journal, 2018, 34 (1), pp.1-10. ⟨10.5423/PPJ.OA.06.2017.0128⟩ Article dans une revue hal-03626126v1
Efficient enrichment cloning of TAL effector genes from Xanthomonas T.T. Tran,H. Doucouré,M. Hutin,L.M. Jaimes Niño,B. Szureket al. MethodsX, 2018, 5, pp.1027-1032. ⟨10.1016/j.mex.2018.08.014⟩ Article dans une revue hal-03626143v1
Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean Nicolas Chen,Laurana Serres-Giardi,Mylène Ruh,Martial Briand,Sophie Bonneauet al. BMC Genomics, 2018, 19 (1), 20 p. ⟨10.1186/s12864-018-4975-4⟩ Article dans une revue hal-02627510v1
Functional and Genome Sequence-Driven Characterization of tal Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian Xanthomonas oryzae pv. oryzae Strains Hinda Doucouré,Alvaro Pérez-Quintero,Ganna Reshetnyak,Cheick Tekete,Florence Auguyet al. Frontiers in Microbiology, 2018, 9, pp.1657. ⟨10.3389/fmicb.2018.01657⟩ Article dans une revue hal-03626138v1
Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens Daniel Garçia Seco,Marco Chiapello,Marcella Bracale,Céline Pesce,Paolo Bagnaresiet al. Scientific Reports, 2017, 7 (1), pp.10157. ⟨10.1038/s41598-017-10568-8⟩ Article dans une revue hal-03626122v1
Characterization of the Xanthomonas translucens Complex Using Draft Genomes, Comparative Genomics, Phylogenetic Analysis, and Diagnostic LAMP Assays Paul Langlois,Jacob Snelling,John Hamilton,Claude Bragard,Ralf Koebniket al. Phytopathology, 2017, 107 (5), pp.519-527. ⟨10.1094/PHYTO-08-16-0286-R⟩ Article dans une revue hal-03626106v1
First Report of a New Bacterial Leaf Blight of Rice Caused by Pantoea ananatis and Pantoea stewartii in Togo K. Kini,R. Agnimonhan,O. Afolabi,B. Soglonou,D. Siluéet al. Plant Disease, 2017, 101 (1), pp.241. ⟨10.1094/PDIS-06-16-0939-PDN⟩ Article dans une revue hal-03626078v1
First Report of a New Bacterial Leaf Blight of Rice Caused by Pantoea ananatis and Pantoea stewartii in Benin K. Kini,R. Agnimonhan,O. Afolabi,B. Milan,B. Soglonouet al. Plant Disease, 2017, 101 (1), pp.242-242. ⟨10.1094/PDIS-06-16-0940-PDN⟩ Article dans une revue hal-03626087v1
Comparative Genomics Identifies a Novel Conserved Protein, HpaT, in Proteobacterial Type III Secretion Systems that Do Not Possess the Putative Translocon Protein HrpF Céline Pesce,Jonathan Jacobs,Edwige Berthelot,Marion Perret,Taca Vanchevaet al. Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01177⟩ Article dans une revue hal-03626112v1
Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14 -inducing TAL effectors Servane Blanvillain-Baufumé,Maik Reschke,Montserrat Solé,Florence Auguy,Hinda Doucoureet al. Plant Biotechnology Journal, 2017, 15 (3), pp.306-317. ⟨10.1111/pbi.12613⟩ Article dans une revue hal-03626092v1
High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero Ebrahim Osdaghi,Natalia Forero Serna,Stéphanie Bolot,Marion Fischer-Le Saux,Marie-Agnès Jacqueset al. Genome Announcements, 2017, 5 (48), pp.e01378-17. ⟨10.1128/genomeA.01378-17⟩ Article dans une revue hal-01905579v1
Effector Mimics and Integrated Decoys, the Never-Ending Arms Race between Rice and Xanthomonas oryzae Paola Zuluaga Cruz,Boris Szurek,Ralf Koebnik,Thomas Kroj,Jean-Benoit Morel Frontiers in Plant Science, 2017, 8, pp.1-4. ⟨10.3389/fpls.2017.00431⟩ Article dans une revue hal-01605934v1
Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases Mathilde Hutin,Stella Cesari,Véronique Chalvon,Corinne Michel,Tuan Tu Tranet al. The Plant Journal, 2016, 88 (1), pp.43-55. ⟨10.1111/tpj.13231⟩ Article dans une revue hal-02637573v1
AnnoTALE: bioinformatics tools for identification, annotation and nomenclature of TALEs from Xanthomonas genomic sequences Jan Grau,Maik Reschke,Annett Erkes,Jana Streubel,Richard Morganet al. Scientific Reports, 2016, 6 (1), pp.21077. ⟨10.1038/srep21077⟩ Article dans une revue hal-03625304v1
Whole-Genome Sequences of Xanthomonas euvesicatoria Strains Clarify Taxonomy and Reveal a Stepwise Erosion of Type 3 Effectors Jeri D. Barak,Taca Vancheva,Pierre Lefeuvre,Jeffrey B. Jones,Sujan Timilsinaet al. Frontiers in Plant Science, 2016, 7, pp.1805. ⟨10.3389/fpls.2016.01805⟩ Article dans une revue hal-03625317v1
High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants I. Robène,Stéphanie S. Bolot,Olivier Pruvost,Matthieu Arlat,Laurent Noelet al. Genome Announcements, 2016, 4 (5), pp.e00902-16. ⟨10.1128/genomeA.00902-16⟩ Article dans une revue hal-02629928v1
Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas Marie-Agnès Jacques,Matthieu Arlat,Alice Boulanger,Tristan Boureau,Sébastien Carrèreet al. Annual Review of Phytopathology, 2016, 54 (1), pp.163-187. ⟨10.1146/annurev-phyto-080615-100147⟩ Article dans une revue (article de synthèse) hal-03383508v1
First Report of Bacterial Leaf Blight of Rice Caused by Xanthomonas oryzae pv. oryzae in Benin O. Afolabi,R. Amoussa,M. Bilé,A. Oludare,V. Gbogboet al. Plant Disease, 2016, 100 (2), pp.515-515. ⟨10.1094/PDIS-07-15-0821-PDN⟩ Article dans une revue hal-03625298v1
Draft Genome Sequence ofXanthomonas translucenspv. graminis Pathotype Strain CFBP 2053 Céline Pesce,Stéphanie Bolot,Edwige Berthelot,Claude Bragard,Sebastien Cunnacet al. Genome Announcements, 2015, 3 (5), pp.e01174-15. ⟨10.1128/genomeA.01174-15⟩ Article dans une revue hal-01594261v1
Draft Genome Sequences of Two Xanthomonas vesicatoria Strains from the Balkan Peninsula Taca Vancheva,Nevena Bogatzevska,Penka Moncheva,Pierre Lefeuvre,Ralf Koebnik Genome Announcements, 2015, 3 (1), pp.e01558-14. ⟨10.1128/genomeA.01558-14⟩ Article dans une revue hal-03625226v1
Draft Genome Sequences of Two Xanthomonas euvesicatoria Strains from the Balkan Peninsula Taca Vancheva,Pierre Lefeuvre,Nevena Bogatzevska,Penka Moncheva,Ralf Koebnik Genome Announcements, 2015, 3 (1), pp.e01528-14. ⟨10.1128/genomeA.01528-14⟩ Article dans une revue hal-03625220v1
Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas Jonathan M. Jacobs,Céline Pesce,Pierre Lefeuvre,Ralf Koebnik Frontiers in Plant Science, 2015, 6, pp.431. ⟨10.3389/fpls.2015.00431⟩ Article dans une revue hal-03625231v1
High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541. Céline Pesce,Stéphanie Bolot,Sébastien Cunnac,Perrine Portier,Marion Le Sauxet al. Genome Announcements, 2015, 3 (1), ⟨10.1128/genomeA.01574-14⟩ Article dans une revue hal-01209993v1
A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice Mathilde Hutin,Francois Sabot,Alain Ghesquière,Ralf Koebnik,Boris Szurek The Plant Journal, 2015, 84 (4), pp.694-703. ⟨10.1111/tpj.13042⟩ Article dans une revue hal-03219869v1
Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. Brice Roux,Stéphanie Bolot,Endrick Guy,Nicolas Denancé,Martine Lautieret al. BMC Genomics, 2015, 16 (1), pp.975. ⟨10.1186/s12864-015-2190-0⟩ Article dans une revue hal-01455988v1
Confirmation of Bacterial Leaf Streak of Rice Caused by Xanthomonas oryzae pv. oryzicola in Vietnam T. Tran,N. Nga,P. Ngan,N. Hong,B. Szureket al. Plant Disease, 2015, 99 (12), pp.1853-1853. ⟨10.1094/PDIS-03-15-0289-PDN⟩ Article dans une revue hal-03625273v1
New Multilocus Variable-Number Tandem-Repeat Analysis Tool for Surveillance and Local Epidemiology of Bacterial Leaf Blight and Bacterial Leaf Streak of Rice Caused by Xanthomonas oryzae L. Poulin,P. Grygiel,M. Magne,L. Gagnevin,L. M. Rodriguez-Ret al. Applied and Environmental Microbiology, 2015, 81 (2), pp.688-698. ⟨10.1128/AEM.02768-14⟩ Article dans une revue hal-03625189v1
First Report of Xanthomonas oryzae pv. oryzicola Causing Bacterial Leaf Streak of Rice in Uganda O. Afolabi,B. Milan,L. Poulin,J. Ongom,B. Szureket al. Plant Disease, 2014, 98 (11), pp.1579-1579. ⟨10.1094/PDIS-07-14-0745-PDN⟩ Article dans une revue hal-03625164v1
A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage Olivier Pruvost,Maxime Magne,Karine Boyer,Alice Leduc,Christophe Tourterelet al. PLoS ONE, 2014, 9 (6), pp.e98129. ⟨10.1371/journal.pone.0098129⟩ Article dans une revue hal-01456735v1
Comparative proteomics reveal new HrpX-regulated proteins of Xanthomonas oryzae pv. oryzae Guillaume Robin,Erika Ortiz,Boris Szurek,Jean-Paul Brizard,Ralf Koebnik Journal of Proteomics, 2014, 97, pp.256-264. ⟨10.1016/j.jprot.2013.04.010⟩ Article dans une revue istex hal-03624821v1
First Report of Xanthomonas oryzae pv. oryzicola Causing Bacterial Leaf Streak of Rice in Burundi O. Afolabi,B. Milan,R. Amoussa,R. Koebnik,L. Poulinet al. Plant Disease, 2014, 98 (10), pp.1426-1426. ⟨10.1094/PDIS-05-14-0504-PDN⟩ Article dans une revue hal-03625154v1
Analysis of Xanthomonas oryzae pv. oryzicola Population in Mali and Burkina Faso Reveals a High Level of Genetic and Pathogenic Diversity I. Wonni,B. Cottyn,L. Detemmerman,S. Dao,L. Ouedraogoet al. Phytopathology, 2014, 104 (5), pp.520-531. ⟨10.1094/PHYTO-07-13-0213-R⟩ Article dans une revue hal-03624866v1
The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles Ofir Bahar,Rory Pruitt,Dee Dee Luu,Benjamin Schwessinger,Arsalan Daudiet al. PeerJ, 2014, 2, pp.e242. ⟨10.7717/peerj.242⟩ Article dans une revue hal-03624834v1
Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers César Trujillo,Nathalia Arias-Rojas,Lucie Poulin,César Medina,Anibal Tapieroet al. BMC Microbiology, 2014, 14 (1), pp.161. ⟨10.1186/1471-2180-14-161⟩ Article dans une revue hal-03624881v1
Draft Genome Sequence of the Flagellated Xanthomonas fuscans subsp. fuscans Strain CFBP 4884 A. Indiana,M. Briand,Matthieu Arlat,Lionel Gagnevin,R. Koebniket al. Genome Announcements, 2014, 2 (5), pp.e00966-14. ⟨10.1128/genomeA.00966-14⟩ Article dans une revue hal-01134880v1
Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369. Lionel Gagnevin,Stéphanie Bolot,J L Gordon,Olivier Pruvost,Christian Vernièreet al. Genome Announcements, 2014, 2 (4), ⟨10.1128/genomeA.00727-14⟩ Article dans une revue hal-01209994v1
Confirmation of Bacterial Leaf Streak Caused by Xanthomonas oryzae pv. oryzicola on Rice in Madagascar L. Poulin,H. Raveloson,M. Sester,L.-M. Raboin,D. Siluéet al. Plant Disease, 2014, 98 (10), pp.1423-1423. ⟨10.1094/PDIS-02-14-0132-PDN⟩ Article dans une revue hal-03625143v1
Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads Armelle Darrasse,Sebastien Carrere,Valérie Barbe,Tristan Boureau,Mario L. Arrieta-Ortizet al. BMC Genomics, 2013, 14, pp.761--790. ⟨10.1186/1471-2164-14-761⟩ Article dans une revue hal-01199326v1
Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides Monique Royer,Ralf Koebnik,Melanie Marguerettaz,Valerie Barbe,Guillaume P. Robinet al. BMC Genomics, 2013, 14, ⟨10.1186/1471-2164-14-658⟩ Article dans une revue hal-01209938v1
TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants Luisa Castiblanco,Juliana Gil,Alejandro Rojas,Daniela Osorio,Sonia Gutiérrezet al. Molecular Plant Pathology, 2013, 14 (1), pp.84-95. ⟨10.1111/j.1364-3703.2012.00830.x⟩ Article dans une revue hal-03624152v1
High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119. Armelle Darrasse,Stéphanie S. Bolot,Laurana Serres Giardi,Erika Charbit,Tristan Boureauet al. Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01036-13⟩ Article dans une revue hal-02648487v1
Identification of non-TAL effectors in Xanthomonas oryzae pv. oryzae Chinese strain 13751 and analysis of their role in the bacterial virulence Shuai Zhao,Wei-Lan Mo,Fan Wu,Wei Tang,Ji-Liang Tanget al. World Journal of Microbiology and Biotechnology, 2013, 29 (4), pp.733-744. ⟨10.1007/s11274-012-1229-5⟩ Article dans une revue istex hal-03624159v1
High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836. Marie Agnes Jacques,Stéphanie S. Bolot,Erika Charbit,Armelle Darrasse,Martial Briandet al. Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01035-13⟩ Article dans une revue hal-02649259v1
Five phylogenetically close rice SWEET genes confer TAL effector‐mediated susceptibility to Xanthomonas oryzae pv. oryzae Jana Streubel,Céline Pesce,Mathilde Hutin,Ralf Koebnik,Jens Bochet al. New Phytologist, 2013, 200 (3), pp.808-819. ⟨10.1111/nph.12411⟩ Article dans une revue hal-03624174v1
Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642. Stéphanie S. Bolot,Alejandra Munoz Bodnar,Sébastien Cunnac,Erika Ortiz,Boris Szureket al. Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00679-13⟩ Article dans une revue hal-02642222v1
An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains Alvaro Pérez-Quintero,Luis Rodriguez-R,Alexis Dereeper,Camilo López,Ralf Koebniket al. PLoS ONE, 2013, 8 (7), pp.e68464. ⟨10.1371/journal.pone.0068464⟩ Article dans une revue hal-03624166v1
High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains. Sébastien Cunnac,Stéphanie S. Bolot,Natalia Forero Serna,Erika Ortiz,Boris Szureket al. Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00674-13⟩ Article dans une revue hal-02643147v1
Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151 Mario L. Arrieta-Ortiz,Luis M. Rodríguez-R,Alvaro L. Pérez-Quintero,Lucie Poulin,Ana C. Díazet al. PLoS ONE, 2013, 8 (11), pp.e79704. ⟨10.1371/journal.pone.0079704⟩ Article dans une revue hal-01199314v1
Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels Isabelle Pieretti,Monique Royer,Valérie Barbe,Sébastien Carrere,Ralf Koebniket al. BMC Genomics, 2012, 13 (1), pp.658--680. ⟨10.1186/1471-2164-13-658⟩ Article dans une revue hal-01199327v1
Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae Ahmed Hajri,Chrystelle Brin,Shuai Zhao,Perrine David,Jia-Xu Fenget al. Molecular Plant Pathology, 2012, 13 (3), pp.288--302. ⟨10.1111/j.1364-3703.2011.00745.x⟩ Article dans une revue hal-01199331v1
Development of a Variable Number of Tandem Repeats Typing Scheme for the Bacterial Rice Pathogen Xanthomonas oryzae pv. oryzicola Shuai Zhao,Lucie Poulin,Luis Rodriguez-R,Natalia Forero Serna,Shu-Yan Liuet al. Phytopathology, 2012, 102 (10), pp.948-956. ⟨10.1094/PHYTO-04-12-0078-R⟩ Article dans une revue hal-03624143v1
Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. Adam J. Bogdanove,Ralf Koebnik,Hong Lu,Ayako Furutani,Samuel V. Angiuoliet al. Journal of Bacteriology, 2011, 193 (19), pp.5450-5464. ⟨10.1128/JB.05262-11⟩ Article dans une revue hal-02650254v1
Colonization of Rice Leaf Blades by an African Strain of Xanthomonas oryzae pv. oryzae Depends on a New TAL Effector That Induces the Rice Nodulin-3 Os11N3 Gene Yanhua Yu,Jana Streubel,Sandrine Balzergue,Antony Champion,Jens Bochet al. Molecular Plant-Microbe Interactions, 2011, 24 (9), pp.1102 - 1113. ⟨10.1094/MPMI-11-10-0254⟩ Article dans une revue hal-02647827v1
Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper Neha Potnis,Ksenia Krasileva,Virginia Chow,Nalvo Almeida,Prabhu Patilet al. BMC Genomics, 2011, 12 (1), pp.146 Article dans une revue hal-03624117v1
Membrane topology of conserved components of the type III secretion system from the plant pathogen Xanthomonas campestris pv. vesicatoria. Carolin Berger,Guillaume P Robin,Ulla Bonas,Ralf Koebnik Microbiology, 2010, 156 (Pt 7), pp.1963-74. ⟨10.1099/mic.0.039248-0⟩ Article dans une revue hal-00788092v1
Passing GO (gene ontology) in plant pathogen biology : a report from the Xanthomonas Genomics Conference Robert P. Ryan,Ralf Koebnik,Boris Szurek,Tristan Boureau,Adriana Bernalet al. Cellular Microbiology, 2009, 11 (12), pp.1689-1696. ⟨10.1111/j.1462-5822.2009.01387.x⟩ Article dans une revue hal-02658546v1
The type III effectors of Xanthomonas Frank White,Neha Potnis,Jeffrey Jones,Ralf Koebnik Molecular Plant Pathology, 2009, 10 (6), pp.749-766. ⟨10.1111/j.1364-3703.2009.00590.x⟩ Article dans une revue hal-03623600v1
The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. Isabelle Pieretti,Monique Royer,Valérie Barbe,Sébastien Carrere,Ralf Koebniket al. BMC Genomics, 2009, 10, pp.616. ⟨10.1186/1471-2164-10-616⟩ Article dans une revue hal-00730090v1
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A Steven Salzberg,Daniel Sommer,Michael Schatz,Adam Phillippy,Pablo Rabinowiczet al. BMC Genomics, 2008, 9 (1), pp.204. ⟨10.1186/1471-2164-9-204⟩ Article dans une revue hal-03623526v1
The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae Roy Gross,Carlos Guzman,Mohammed Sebaihia,Vítor Ap Martins dos Santos,Dietmar Pieperet al. BMC Genomics, 2008, 9 (1), pp.449. ⟨10.1186/1471-2164-9-449⟩ Article dans une revue hal-03623587v1
Refinement of the Xanthomonas campestris pv. vesicatoria hrpD and hrpE Operon Structure Ernst Weber,Carolin Berger,Ulla Bonas,Ralf Koebnik Molecular Plant-Microbe Interactions, 2007, 20 (5), pp.559-567. ⟨10.1094/MPMI-20-5-0559⟩ Article dans une revue hal-03623218v1
A Minimal Transmembrane β-Barrel Platform Protein Studied by Nuclear Magnetic Resonance , Maria Johansson,Simon Alioth,Kaifeng Hu,Reto Walser,Ralf Koebniket al. Biochemistry, 2007, 46 (5), pp.1128-1140. ⟨10.1021/bi061265e⟩ Article dans une revue istex hal-03623225v1
Specific binding of the Xanthomonas campestris pv. vesicatoria AraC-type transcriptional activator HrpX to plant-inducible promoter boxes. Ralf Koebnik,Antje Krüger,Frank Thieme,Alexander Urban,Ulla Bonas Journal of Bacteriology, 2006, 188 (21), pp.7652-60. ⟨10.1128/JB.00795-06⟩ Article dans une revue hal-00163972v1
Positive Selection of the Hrp Pilin HrpE of the Plant Pathogen Xanthomonas Ernst Weber,Ralf Koebnik Journal of Bacteriology, 2006, 188 (4), pp.1405-1410. ⟨10.1128/JB.188.4.1405-1410.2006⟩ Article dans une revue hal-03623211v1
The Type III-Dependent Hrp Pilus Is Required for Productive Interaction of Xanthomonas campestris pv. vesicatoria with Pepper Host Plants Ernst Weber,Tuula Ojanen-Reuhs,Elisabeth Huguet,Gerd Hause,Martin Romantschuket al. Journal of Bacteriology, 2005, 187 (7), pp.2458-2468. ⟨10.1128/JB.187.7.2458-2468.2005⟩ Article dans une revue hal-03622583v1
TonB-dependent trans-envelope signalling: the exception or the rule? Ralf Koebnik Trends in Microbiology, 2005, 13 (8), pp.343-347. ⟨10.1016/j.tim.2005.06.005⟩ Article dans une revue istex hal-03622601v1
Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence Frank Thieme,Ralf Koebnik,Thomas Bekel,Carolin Berger,Jens Bochet al. Journal of Bacteriology, 2005, 187 (21), pp.7254-7266. ⟨10.1128/JB.187.21.7254-7266.2005⟩ Article dans une revue hal-03623159v1
Domain Structure of HrpE, the Hrp Pilus Subunit of Xanthomonas campestris pv. vesicatoria Ernst Weber,Ralf Koebnik Journal of Bacteriology, 2005, 187 (17), pp.6175-6186. ⟨10.1128/JB.187.17.6175-6186.2005⟩ Article dans une revue hal-03622616v1
Sucrose transport through maltoporin mutants of Escherichia coli Patrick van Gelder,Raimund Dutzler,Fabrice Dumas,Ralf Koebnik,Tilman Schirmer Protein Engineering, Design and Selection, 2001, 14 (11), pp.943-948. ⟨10.1093/protein/14.11.943⟩ Article dans une revue hal-03621359v1
The role of bacterial pili in protein and DNA translocation Ralf Koebnik Trends in Microbiology, 2001, 9 (12), pp.586-590. ⟨10.1016/S0966-842X(01)02255-7⟩ Article dans une revue istex hal-03621371v1
Extended Sugar Slide Function for the Periplasmic Coiled Coil Domain of ScrY Fabrice Dumas,Sabine Frank,Ralf Koebnik,Emeline Maillet,Ariel Lustiget al. Journal of Molecular Biology, 2000, 300 (4), pp.687-695. ⟨10.1006/jmbi.2000.3897⟩ Article dans une revue istex hal-03621353v1
Structure and function of bacterial outer membrane proteins: barrels in a nutshell Ralf Koebnik,Kaspar Locher,Patrick van Gelder Molecular Microbiology, 2000, 37 (2), pp.239-253. ⟨10.1046/j.1365-2958.2000.01983.x⟩ Article dans une revue hal-03621348v1
Sugar Transport through Maltoporin of Escherichia coli Fabrice Dumas,Ralf Koebnik,Mathias Winterhalter,Patrick van Gelder Journal of Biological Chemistry, 2000, 275 (26), pp.19747-19751. ⟨10.1074/jbc.M000268200⟩ Article dans une revue hal-03621341v1
Structural and Functional Roles of the Surface-Exposed Loops of the β-Barrel Membrane Protein OmpA from Escherichia coli Ralf Koebnik Journal of Bacteriology, 1999, 181 (12), pp.3688-3694. ⟨10.1128/JB.181.12.3688-3694.1999⟩ Article dans une revue hal-03621334v1
Membrane assembly of the Escherichia coli outer membrane protein OmpA: exploring sequence constraints on transmembrane β-strands Ralf Koebnik Journal of Molecular Biology, 1999, 285 (4), pp.1801-1810. ⟨10.1006/jmbi.1998.2405⟩ Article dans une revue istex hal-03621329v1
Stability of Trimeric OmpF Porin: The Contributions of the Latching Loop L2 Prashant Phale,Ansgar Philippsen,Thomas Kiefhaber,Ralf Koebnik,Vrishali Phaleet al. Biochemistry, 1998, 37 (45), pp.15663-15670. ⟨10.1021/bi981215c⟩ Article dans une revue istex hal-03621287v1
Identification and Characterization of Two Quiescent Porin Genes, nmpC and ompN , in Escherichia coli B E Alexej Prilipov,Prashant Phale,Ralf Koebnik,Christine Widmer,Jurg Rosenbusch Journal of Bacteriology, 1998, 180 (13), pp.3388-3392. ⟨10.1128/JB.180.13.3388-3392.1998⟩ Article dans une revue hal-03621278v1
Coupling site-directed mutagenesis with high-level expression: large scale production of mutant porins from E. coli Alexej Prilipov,Prashant Phale,Patrick Gelder,Jurg Rosenbusch,Ralf Koebnik FEMS Microbiology Letters, 1998, 163 (1), pp.65-72. ⟨10.1111/j.1574-6968.1998.tb13027.x⟩ Article dans une revue hal-03621269v1
Transmembrane Signaling across the Ligand-Gated FhuA Receptor Kaspar Locher,Bernard Rees,Ralf Koebnik,André Mitschler,Luc Moulinieret al. Cell, 1998, 95 (6), pp.771-778. ⟨10.1016/S0092-8674(00)81700-6⟩ Article dans une revue istex hal-03621295v1
In vivo membrane assembly of split variants of the E.coli outer membrane protein OmpA Ralf Koebnik The EMBO Journal, 1996, 15 (14), pp.3529-3537. ⟨10.1002/j.1460-2075.1996.tb00722.x⟩ Article dans une revue hal-03620649v1
Proposal for a peptidoglycan-associating alpha-helical motif in the C-terminal regions of some bacterial cell-surface proteins Ralf Koebnik Molecular Microbiology, 1995, 16 (6), pp.1269-1270. ⟨10.1111/j.1365-2958.1995.tb02348.x⟩ Article dans une revue hal-03620644v1
Membrane Assembly of Circularly Permuted Variants of the E. coli Outer Membrane Protein OmpA Ralf Koebnik,Lisa Krämer Journal of Molecular Biology, 1995, 250 (5), pp.617-626. ⟨10.1006/jmbi.1995.0403⟩ Article dans une revue istex hal-03620647v1
Membrane topology and assembly of the outer membrane protein OmpA of Escherichia coli K12 Georg Ried,Ralf Koebnik,Ingrid Hindennach,Bettina Mutschler,Ulf Henning Molecular and General Genetics MGG, 1994, 243 (2), pp.127-135. ⟨10.1007/BF00280309⟩ Article dans une revue istex hal-03620638v1
Survey on Newly Characterized Iron Uptake Systems of Yersinia enterocolitica Andreas Bäumler,Ralf Koebnik,Igor Stojiljkovic,Jürgen Heesemann,Volkmar Braunet al. Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology, 1993, 278 (2-3), pp.416-424. ⟨10.1016/S0934-8840(11)80858-3⟩ Article dans une revue istex hal-03620633v1
The TonB protein of Yersinia enterocolitica and its interactions with TonB-box proteins Ralf Koebnik,Andreas Bäumler,Jürgen Heesemann,Volkmar Braun,Klaus Hantke Molecular and General Genetics MGG, 1993, 237-237 (1-2), pp.152-160. ⟨10.1007/BF00282796⟩ Article dans une revue istex hal-03620626v1
The TonB-dependent ferrichrome receptor FcuA of Yersinia enterocolitica: evidence against a strict co-evolution of receptor structure and substrate specificity Ralf Koebnik,Klaus Hantke,Volkmar Braun,Andreas Bäumler,Jürgen Heesemann Molecular Microbiology, 1993, 7 (3), pp.383-393. ⟨10.1111/j.1365-2958.1993.tb01130.x⟩ Article dans une revue hal-03620625v1
Insertion derivatives containing segments of up to 16 amino acids identify surface- and periplasm-exposed regions of the FhuA outer membrane receptor of Escherichia coli K-12 Ralf Koebnik,Volkmar Braun Journal of Bacteriology, 1993, 175 (3), pp.826-839. ⟨10.1128/jb.175.3.826-839.1993⟩ Article dans une revue hal-03620628v1
Structural organization of TonB-dependent receptors Ralf Koebnik Trends in Microbiology, 1993, 1 (5), pp.201. ⟨10.1016/0966-842X(93)90092-6⟩ Article dans une revue istex hal-03620636v1
The molecular interaction between components of the TonB-ExbBD-dependent and of the TolQRA-dependent bacterial uptake systems Ralf Koebnik Molecular Microbiology, 1993, 9 (1), pp.219. ⟨10.1111/j.1365-2958.1993.tb01683.x⟩ Article dans une revue hal-03620634v1

Pré-publication, Document de travail (1)

Celebrating the 20th Anniversary of the First Xanthomonas Genome Sequences – How Genomics Revolutionized Taxonomy, Provided Insight into the Emergence of Pathogenic Bacteria, Enabled New Fundamental Discoveries and Helped Developing Novel Control Measures – A Perspective from the French Network on Xanthomonads Ralf Koebnik,Sophie Cesbron,Nicolas Chen,Marion Fischer-Le Saux,Mathilde Hutinet al. 2024 Pré-publication, Document de travail (preprint/prepublication) hal-04932122v1

Communication dans un congrès (17)

CRISPRI AS A TOOL FOR THE FUNCTIONAL STUDY OF GENE FAMILIES IN XANTHOMONAS Carlos Andrés Zárate-Chaves,Corinne Audran,César Augusto Medina Culma,Escalone Aline,Stéphanie Javegnyet al. ICPP2023, Aug 2023, Lyon, France Communication dans un congrès hal-04208321v1
Crispri as a tool for the functional study of gene families in Xanthomonas Carlos Andrés Zárate-Chaves,Corinne Audran,Cesar Medina,Aline Escalon,Stéphanie Javegnyet al. 12. International Congress of Plant Pathology (ICPP 2023), ISPP; SFP, Aug 2023, Lyon, France. pp.575-576 Communication dans un congrès hal-05182123v1
Ebb and flow of vascular pathogenesis through repeated gain and loss of a molecular switch E. Gluck-Thaler,Aude Cerutti,A. L. Perez Quintero,C. Pesce,Alain Jauneauet al. 18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom Communication dans un congrès hal-02735187v1
A single cellobiosidase is required for barley hydathode and xylem colonization by Xanthomonas translucens Aude Cerutti,Alain Jauneau,Marie-Christine Auriac,J. Butchacas,E. Gluck-Thaleret al. 18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom Communication dans un congrès hal-02735197v1
Surveillance and control of cassava diseases in Africa - International meeting results in Pan-African cassava disease network Jean-Michel Lett,Michel Roux-Cuvelier,Abdou Azali Hamza,H. Atta Diallo,Larry Beachet al. World Congress on Root and Tuber Crops, Jan 2016, Guangxi, China Communication dans un congrès hal-01456753v1
Tandem repeats as genotyping tools for understanding the genetic structure and epidemiology of #Xanthomonas citri# pv. #citri# Alice Leduc,Yaya Nadia Traoré,Karine Boyer,Maxime Magne,Pierre Grygielet al. Xanthomonas Genomics Conference 2015, Jul 2015, Bogota, Colombia Communication dans un congrès hal-01456715v1
Comparative genomics and transcriptomics of #Xanthomonas campestris# : Session 3- Physiologie, génétique et génomique des bactéries Stéphanie Bolot,Brice Roux,Endrick Guy,Nicolas Denancé,Martine Lautieret al. 11èmes Rencontres Plantes-Bactéries, Feb 2014, Aussois, France. pp.40 Communication dans un congrès hal-01456725v1
Genome and transcriptome analysis to reveal adaptation to new environments and hosts Lionel Gagnevin,Brice Roux,Stéphanie Bolot,Sebastien Carrere,Erika Charbitet al. APS-MSA Joint Meeting, Aug 2013, Austin, Texas, United States Communication dans un congrès hal-01209932v1
Genome mining reveals a novel and promising NRPS gene cluster in #Xanthomonas albilineans#, #Xanthomonas oryzae# and #Xanthomonas translucens# Monique Royer,Ralf Koebnik,Melanie Marguerettaz,Valérie Barbe,Guillaume P. Robinet al. 59. Congresso Brasileiro de Genética, Sep 2013, Águas de Lindóia, Brazil Communication dans un congrès hal-01456738v1
Genome sequencing of Xanthomonas axonopodis pv. phaseoli CFBP4834-R reveals that flagellar motility is not a general feature of xanthomonads. [Abstract] Armelle Darrasse,Sébastien Carrere,Valérie Barbe,Tristan Bourreau,Adriana Bernalet al. 4. Xanthomonas Genomics Conference, Jul 2012, Angers, France Communication dans un congrès hal-01202944v1
The complete genome sequence of Xanthomonas albilineans provides insights into pathogenicity of this sugarcane pathogen and allows further assessments of the large diversity within this species Isabelle Pieretti,Stéphane Cociancich,Valerie Barbe,Sébastien Carrere,Ralf Koebniket al. 5th European conference on prokaryotic and fungal genomics, Sep 2011, Göttingen, Germany Communication dans un congrès hal-01202957v1
Evidences for selection on promoter region reveal a hidden aspect of the multifaceted evolution of the type three effector Avrbs2 in the Xanthomonas axonopodis species P. David,Ahmed Hajri,C Rousseau,Chrystelle Brin,Sophie Bonneauet al. International meeting on communication in plants and their responses to the environment, May 2011, ZZ, Unknown Region Communication dans un congrès hal-01202956v1
The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae Isabelle Pieretti,Monique Royer,Valérie Barbe,Sebastien Carrere,Ralf Koebniket al. 14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Québec City, Canada. 2 p Communication dans un congrès hal-02817753v1
La séquence complète du génome de Xanthomonas albilineans apporte un éclairage nouveau sur l'évolution des Xanthomonadaceae dont l'habitat est limité au xylème I. Pieretti,M. Royer,Valérie Barbe,Sébastien Carrere,R. Koebniket al. 7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon, France Communication dans un congrès hal-00729249v1
La séquence complète du génome de Xanthomonas albilineans apporte un éclairage nouveau sur l'évolution des Xanthomonadaceae dont l'habitat est limité au xylème Isabelle Pieretti,Monique Royer,Valérie Barbe,Sebastien Carrere,Ralf Koebniket al. 7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon, France. 1 p Communication dans un congrès hal-02824029v1
A novel molecular typing system for pathogenic xanthomonads Alejandra Munoz Bodnar,Karine Durand,Christian Vernière,Olivier Pruvost,Marie Agnes Jacqueset al. Xanthomonas Genomic Conference 2009, Jul 2009, Pingree Park, Colorado, United States Communication dans un congrès hal-02756197v1
La séquence du génome de Xanthomonas albilineans dévoile des particularités surprenantes chez cette bactérie pathogène de la canne à sucre Isabelle Pieretti,Monique Royer,Valérie Barbe,Sébastien Carrere,Ralf Koebniket al. 8. Rencontres plantes-bactéries, Jan 2008, Aussois, France Communication dans un congrès hal-01202965v1

Chapitre d'ouvrage (5)

CHAPTER 21: Targeting of the rice transcriptome by TAL effectors of Xanthomonas oryzae David Niño-Liu,Timothy Bancroft,Misha Rajaram,Matthew Moscou,Rico Caldoet al. Genome-Enabled Analysis of Plant-Pathogen Interactions, The American Phytopathological Society, pp.193-206, 2017, ⟨10.1094/9780890544983.021⟩ Chapitre d'ouvrage hal-03623128v1
The Genomics of Xanthomonas oryzae Lindsay Triplett,Ralf Koebnik,Valerie Verdier,Jan Leach Genomics of Plant-Associated Bacteria, Springer Berlin Heidelberg, pp.127-150, 2014, ⟨10.1007/978-3-642-55378-3_6⟩ Chapitre d'ouvrage hal-03623153v1
Adhesion Mechanisms of Plant-Pathogenic Xanthomonadaceae Nadia Mhedbi-Hajri,Marie Agnes Jacques,Ralf Koebnik Bacterial adhesion : chemistry, biology and physics, 715, Springer International, 374 p., 2011, Advances in Experimental Medicine and Biology, 978-94-007-0940-9. ⟨10.1007/978-94-007-0940-9_5⟩ Chapitre d'ouvrage hal-02811489v1
Comparative genomics and evolution of bacterial type III effectors Ralf Koebnik,Magdalen Lindeberg Effectors in Plant–Microbe Interactions, 1, Wiley, 2011, ⟨10.1002/9781119949138.ch3⟩ Chapitre d'ouvrage hal-03623147v1
Chapter 18 Outer membrane proteins of Escherichia coli: mechanism of sorting and regulation of synthesis Ulf Henning,Ralf Koebnik Bacterial Cell Wall, 27, Elsevier, pp.381-395, 1994, New Comprehensive Biochemistry, ⟨10.1016/S0167-7306(08)60421-4⟩ Chapitre d'ouvrage hal-03620642v1

Poster de conférence (3)

A strategy to study population variation of Xanthomonas axonopodis pv. manihotis using a new set of multiple-locus variable number tandem repeats L. Rache Cardenal,C. Flores,C. Lopez,Boris Szurek,C. Vernieret al. the APS Annual Meeting in Tampa, Florida, U.S.A, Jul 2016, Tampa (FL), United States. Abstracts of Presentations at the 2016 APS Annual Meeting, 106 (12S), pp.S4.1-S4.163, 2016, ⟨10.1094/PHYTO-106-12-S4.1⟩ Poster de conférence hal-04280885v1
AnnoTALE - Identification, Annotation and Classification of Transcription Activator-Like Effectors Annett Erkes,Jan Grau,Maik Reschke,Jana Streubel,Richard D. Morganet al. Poster abstracts of GCB 2015, Sep 2015, Dortmund, Germany. ⟨10.7287/peerj.preprints.1350v2⟩ Poster de conférence hal-03625254v1
Surveillance and control of cassava diseases in Africa Jean-Michel Lett,Michel Roux-Cuvelier,Abdou Azali Hamza,H. Atta Diallo,Larry Beachet al. International workshop : Surveillance and control of cassava diseases in Africa, Jun 2014, Saint-Pierre, Réunion. 2014 Poster de conférence hal-01456754v1

Autre publication scientifique (1)

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae M. Arlat,Valérie Barbe,Sébastien Carrere,S. Cociancich,A. Coulouxet al. 2009, 2 p Autre publication scientifique hal-00730091v1