Raphaël LAMI

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Publications

Publications

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Field measurements of galvanic anode cathodic protection of reinforced concrete systems in marine environment: Influence of water level and biofilm

Deeksha-Arya Margapuram , Marie Salgues , Océane Thibault , Raphaël Lami , Benjamin Erable et al.

RILEM Technical Letters, 2025, 9, pp.117-126. ⟨10.21809/rilemtechlett.2024.205⟩

Article dans une revue hal-05073410v1

Choosing the right substrate to restore coral reefs through artificial reef construction: a mini-review

Baptiste Ozanam , Pascal Romans , Raphaël Lami

Blue Biotechnology, 2025, 2 (1), pp.24. ⟨10.1186/s44315-025-00047-5⟩

Article dans une revue hal-05513557v1
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Bacteria with antibacterial activities isolated from Magallana gigas microbiota as potential probiotics against Vibrio aestuarianus infections in oyster farming

Luc Dantan , Marie-Agnès Travers , Lionel Dégremont , Benjamin Morga , Prunelle Carcassonne et al.

Aquaculture, 2025, 609, pp.742949. ⟨10.1016/j.aquaculture.2025.742949⟩

Article dans une revue hal-05172277v1
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Control of Staphylococcus epidermidis biofilm by surfactins of an endophytic bacterium Bacillus sp. 15 F

Marwa Jardak , Raphaël Lami , Oumaima Saadaoui , Hajer Jlidi , Didier Stien et al.

Enzyme and Microbial Technology, 2024, 180, pp.110477. ⟨10.1016/j.enzmictec.2024.110477⟩

Article dans une revue hal-04669449v1
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Metabolic activities of marine ammonia‐oxidizing archaea orchestrated by quorum sensing

Olivier Pereira , Wei Qin , Pierre E. Galand , Didier Debroas , Raphaël Lami et al.

mLife, 2024, 3 (3), pp.417-429. ⟨10.1002/mlf2.12144⟩

Article dans une revue hal-04764378v1
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Digital Marine: An online platform for blended learning in a marine experimental biology module, the Schmid Training Course

Haley Flom , Maja Adamska , Raphaël Lami , Eve Gazave , Salvatore d'Aniello et al.

BioEssays, In press, ⟨10.1002/bies.202100264⟩

Article dans une revue hal-03628139v1
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A history of teaching in a marine laboratory, the Laboratoire Arago of Banyuls-sur-Mer

Raphaël Lami

Vie et Milieu / Life & Environment, 2022, 72 (3-4), pp.151-178. ⟨10.57890/VIEMILIEU/2022.72.3/4:151-178⟩

Article dans une revue hal-04183689v1
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Current and future chemical treatments to fight biodeterioration of outdoor building materials and associated biofilms: moving away from ecotoxic and towards efficient, sustainable solutions

Mattea Romani , Thomas Warscheid , Lionel Nicole , Lionel Marcon , Patrick Di Martino et al.

Science of the Total Environment, 2022, 802, pp.149846. ⟨10.1016/j.scitotenv.2021.149846⟩

Article dans une revue hal-03328324v1

Quorum sensing in biofilms: a key mechanism to target in ecotoxicological studies

Raphaël Lami , Laurent Urios , Maëlle Molmeret , Régis Grimaud

Critical Reviews in Microbiology, 2022, 49 (6), pp.786-804. ⟨10.1080/1040841X.2022.2142089⟩

Article dans une revue hal-03882166v1
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Straightforward N -Acyl Homoserine Lactone Discovery and Annotation by LC–MS/MS-based Molecular Networking

Alice M S Rodrigues , Raphaël Lami , Karine Escoubeyrou , Laurent Intertaglia , Clément Mazurek et al.

Journal of Proteome Research, 2022, 21, pp.635-642. ⟨10.1021/acs.jproteome.1c00849⟩

Article dans une revue hal-03551975v1
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Quorum Sensing Regulates Bacterial Processes That Play a Major Role in Marine Biogeochemical Cycles

Marion Urvoy , Claire Labry , Stéphane l'Helguen , Raphaël Lami

Frontiers in Marine Science, 2022, 9, pp.834337. ⟨10.3389/fmars.2022.834337⟩

Article dans une revue hal-03813925v1
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Genomic and transcriptomic characterization of the Collimonas quorum sensing genes and regulon

Stephane Uroz , Océane Geisler , Laure Fauchery , Raphaël Lami , Alice M.S. Rodrigues et al.

FEMS Microbiology Ecology, 2022, 98 (11), ⟨10.1093/femsec/fiac100⟩

Article dans une revue hal-03915632v1
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Quorum sensing disruption regulates hydrolytic enzyme and biofilm production in estuarine bacteria

Marion Urvoy , Raphaël Lami , Catherine Dreanno , David Daudé , Alice M S Rodrigues et al.

Environmental Microbiology, 2021, 23 (11), pp.7183-7200. ⟨10.1111/1462-2920.15775⟩

Article dans une revue hal-03814177v1
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Quorum Sensing Regulates the Hydrolytic Enzyme Production and Community Composition of Heterotrophic Bacteria in Coastal Waters

Marion Urvoy , Raphaël Lami , Catherine Dreanno , Daniel Delmas , Stéphane L'Helguen et al.

Frontiers in Microbiology, 2021, 12, pp.780759. ⟨10.3389/fmicb.2021.780759⟩

Article dans une revue hal-03510738v1

The Marine Bacterium Shewanella woodyi Produces C8-HSL to Regulate Bioluminescence

Mahmoud Hayek , Claudine Baraquet , Raphaël Lami , Yves Blache , Maëlle Molmeret

Microbial ecology, 2020, 79 (4), pp.865-881. ⟨10.1007/s00248-019-01454-z⟩

Article dans une revue hal-03603623v1
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Novel α-Hydroxy γ-Butenolides of Kelp Endophytes Disrupt Bacterial Cell-to-Cell Signaling

Marine Vallet , Yee-Meng Chong , Anne Tourneroche , Grégory Genta-Jouve , Cédric Hubas et al.

Frontiers in Marine Science, 2020, 7, pp.601. ⟨10.3389/fmars.2020.00601⟩

Article dans une revue hal-02909195v1
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Annotation and quantification of N-acyl homoserine lactones implied in bacterial quorum sensing by supercritical-fluid chromatography coupled with high-resolution mass spectrometry

Thi Phuong Thuy Hoang , Morgane Barthélemy , Raphaël Lami , Didier Stien , Véronique Eparvier et al.

Analytical and Bioanalytical Chemistry, 2020, 412 (10), pp.2261-2276. ⟨10.1007/s00216-019-02265-4⟩

Article dans une revue hal-03012250v1
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Description of Palleronia rufa sp. nov., a biofilm-forming and AHL-producing Rhodobacteraceae, reclassification of Hwanghaeicola aestuarii as Palleronia aestuarii comb. nov., Maribius pontilimi as Palleronia pontilimi comb. nov., Maribius salinus as Palleronia salina comb. nov., Maribius pelagius as Palleronia pelagia comb. nov. and emended description of the genus Palleronia

Claudie Barnier , Camille Clerissi , Raphaël Lami , Laurent Intertaglia , Philippe Lebaron et al.

Systematic and Applied Microbiology, 2020, 43 (1), pp.126018. ⟨10.1016/j.syapm.2019.126018⟩

Article dans une revue hal-02390411v1
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Evidence of a Large Diversity of <i>N</i>-acyl-Homoserine Lactones in Symbiotic <i>Vibrio fischeri</i> Strains Associated with the Squid <i>Euprymna scolopes</i>

Léa Girard , Elodie Blanchet , Didier Stien , Julia Baudart , Marcelino Suzuki et al.

Microbes and environments / JSME, 2019, 34 (1), pp.99-103. ⟨10.1264/jsme2.ME18145⟩

Article dans une revue hal-02331764v1
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Bacterial–Fungal Interactions in the Kelp Endomicrobiota Drive Autoinducer-2 Quorum Sensing

Anne Tourneroche , Raphaël Lami , Cédric Hubas , Elodie Blanchet , Marine Vallet et al.

Frontiers in Microbiology, 2019, 10, pp.1693. ⟨10.3389/fmicb.2019.01693⟩

Article dans une revue hal-02277573v1
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Sea anemone and clownfish microbiota diversity and variation during the initial steps of symbiosis

Natacha Roux , Raphaël Lami , Pauline Salis , Kevin Magré , Pascal Romans et al.

Scientific Reports, 2019, 9 (1), pp.19491. ⟨10.1038/s41598-019-55756-w⟩

Article dans une revue hal-02468924v1
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High bacterial diversity in pioneer biofilms colonizing ceramic roof tiles

Mattea Romani , Claire Carrion , Frédéric Fernandez , Laurent Intertaglia , David Pecqueur et al.

International Biodeterioration and Biodegradation, 2019, 144, pp.104745. ⟨10.1016/j.ibiod.2019.104745⟩

Article dans une revue hal-02262189v1
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Quorum Sensing and Quorum Quenching in the Mediterranean Seagrass Posidonia oceanica Microbiota

Elodie Blanchet , Soizic Prado , Didier Stien , Jocivânia Oliveira da Silva , Yoan Ferandin et al.

Frontiers in Marine Science, 2017, 4, pp.218. ⟨10.3389/fmars.2017.00218⟩

Article dans une revue hal-02906989v1
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Characterization of N-Acyl Homoserine Lactones in Vibrio tasmaniensis LGP32 by a Biosensor-Based UHPLC-HRMS/MS Method

Léa Girard , Élodie Blanchet , Laurent Intertaglia , Julia Baudart , Didier Stien et al.

Sensors, 2017, 17 (4), pp.906 ⟨10.3390/s17040906⟩

Article dans une revue hal-01513879v1
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Large Diversity and Original Structures of Acyl-Homoserine Lactones in Strain MOLA 401, a Marine Rhodobacteraceae Bacterium

Margot Doberva , Didier Stien , Jonathan Sorres , Nathalie Hue , Sophie Sanchez-Ferandin et al.

Frontiers in Microbiology, 2017, 8, pp.1152. ⟨10.3389/fmicb.2017.01152⟩

Article dans une revue hal-01556563v1
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Pau-Brasil, l’arbre qui donna son nom au Brésil

Raphaël Lami , Laura Gabriela Nisembaum , Anne Tourneroche

ESpèces - Revue d’Histoire naturelle , 2017, Étranges insulaires, 24, pp.34

Article dans une revue hal-02906974v1
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Summer Abundance and Distribution of Proteorhodopsin Genes in the Western Arctic Ocean

Dominique Boeuf , Raphaël Lami , Emelyne Cunnington , Christian Jeanthon

Frontiers in Microbiology, 2016, 7, pp.1584. ⟨10.3389/fmicb.2016.01584⟩

Article dans une revue hal-01391017v1
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La forêt de Fontainebleau: quand la biodiversité inspire les artistes

Raphaël Lami , Rémi Salaün

ESpèces - Revue d’Histoire naturelle , 2016, Terres et mers australes. Vivre dans un monde extrême, 21

Article dans une revue hal-02906979v1

Influence of PAHs among other coastal environmental variables on total and PAH-degrading bacterial communities

Caroline Sauret , Marc Tedetti , C. Guigue , Chloé Dumas , Raphaël Lami et al.

Environmental Science and Pollution Research, 2016, 23 (5), pp.4242-4256. ⟨10.1007/s11356-015-4768-0⟩

Article dans une revue hal-01278782v1
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Quorum sensing and quorum quenching in the phycosphere of phytoplankton: a case of chemical interactions in ecology

Jean-Luc Rolland , Didier Stien , Sophie Sanchez-Ferandin , Raphaël Lami

Journal of Chemical Ecology, 2016, 42 (12), pp.1201-1211. ⟨10.1007/s10886-016-0791-y⟩

Article dans une revue hal-01472696v1
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Marinobacter Dominates the Bacterial Community of the Ostreococcus tauri Phycosphere in Culture

Josselin Lupette , Raphaël Lami , Marc Krasovec , Nigel Grimsley , Hervé Moreau et al.

Frontiers in Microbiology, 2016, 7, pp.1414. ⟨10.3389/fmicb.2016.01414⟩

Article dans une revue hal-01373902v1
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Diversity of quorum sensing autoinducer synthases in the Global Ocean Sampling metagenomic database

Margot Doberva , Sophie Sanchez-Ferandin , Eve Toulza , Philippe Lebaron , Raphaël Lami

Aquatic Microbial Ecology, 2015, 74 (2), pp.107-119. ⟨10.3354/ame01734⟩

Article dans une revue hal-01141144v1
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Genome Sequence of Maribius sp. Strain MOLA 401, a Marine Roseobacter with a Quorum-Sensing Cell-Dependent Physiology

Margot Doberva , Sophie Sanchez-Ferandin , Yoan Ferandin , Laurent Intertaglia , Fabien Joux et al.

Genome Announcements, 2014, 2 (5), pp.e00997-14. ⟨10.1128/genomeA.00997-14⟩

Article dans une revue hal-01214297v1
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Genome Sequence of the Sponge-Associated Ruegeria halocynthiae Strain MOLA R1/13b, a Marine Roseobacter with Two Quorum-Sensing-Based Communication Systems

Margot Doberva , Sophie Sanchez-Ferandin , Yoan Ferandin , Laurent Intertaglia , Julie Croué et al.

Genome Announcements, 2014, 2 (5), pp.e00998-14. ⟨10.1128/genomeA.00998-14⟩

Article dans une revue hal-01228529v1
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Diurnal expression of SAR11 proteorhodopsin and 16S rRNA genes in coastal North Atlantic waters

Raphaël Lami , David L. Kirchman

Aquatic Microbial Ecology, 2014, 73 (3), pp.185-194. ⟨10.3354/ame01716⟩

Article dans une revue hal-02906988v1
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Arsenite modifies structure of soil microbial communities and arsenite oxidization potential

Raphaël Lami , L. Camille Jones , Matthew Cottrell , Brandon J. Lafferty , M. Ginder-Vogel et al.

FEMS Microbiology Ecology, 2013, 84 (2), pp.270-279. ⟨10.1111/1574-6941.12061⟩

Article dans une revue hal-02909471v1
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Seasonal dynamics of aerobic anoxygenic phototrophs in a Mediterranean coastal lagoon

D Lamy , P de Carvalho-Maalouf , M. T. Cottrell , Raphaël Lami , P. Catala et al.

Aquatic Microbial Ecology, 2011, 62 (2), pp.153-163. ⟨10.3354/ame01467⟩

Article dans une revue hal-02906986v1
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Distribution of free-living and particle-attached aerobic anoxygenic phototrophic bacteria in marine environments

Raphaël Lami , Z Âuperová , J. Ras , P. Lebaron , M Koblíïek

Aquatic Microbial Ecology, 2009, 55, pp.31-38. ⟨10.3354/ame01282⟩

Article dans une revue hal-02906984v1
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Annual patterns of presence and activity of marine bacteria monitored by 16S rDNA–16S rRNA fingerprints in the coastal NW Mediterranean Sea

Raphaël Lami , Jf Ghiglione , Y. Desdevises , N West , P. Lebaron

Aquatic Microbial Ecology, 2009, 54, pp.199-210. ⟨10.3354/ame01264⟩

Article dans une revue hal-02906983v1
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Biochemical characteristics and bacterial community structure of the sea surface microlayer in the South Pacific Ocean

I. Obernosterer , P. Catala , R. Lami , J. Caparros , J. Ras et al.

Biogeosciences, 2008, 5 (3), pp.693-705. ⟨10.5194/bg-5-693-2008⟩

Article dans une revue hal-01248038v1

Short-term investigation of interactions of plain concrete, marine microorganisms, and sea water for the application of Floating Offshore Wind Turbines (FOWTs)

Deeksha Margapuram , Marie Salgues , Fabrice Deby , Raphaël Lami , Benjamin Erable et al.

10th International Conference on Concrete Under Severe Loading Conditions – Environment & Loading, CONSEC, Sep 2024, Chennai, India

Communication dans un congrès hal-04973603v1

Comment conduire la lutte antifouling de manière durable et écologique ? Un enjeu majeur pour l'avenir des océans.

Raphaël Lami

Christophe Prazuck. 30 questions sur l’océan: La Sorbonne et la mer, Sorbonne, 2022, Sorbonne Essais, 979-10-231-0734-0

Chapitre d'ouvrage hal-03915702v1
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Marine Bacterial Models for Experimental Biology

Raphaël Lami , Regis. Grimaud , Sophie Sanchez-Brosseau , Christophe Six , François Thomas et al.

Handbook of Marine Model Organisms in Experimental Biology, 1, CRC Press, pp.1-26, 2021, ⟨10.1201/9781003217503-1⟩

Chapitre d'ouvrage hal-04059671v2
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Quorum sensing in marine biofilms and environments

Raphaël Lami

Academic Press. Quorum Sensing, pp.55-96, 2019, ⟨10.1016/B978-0-12-814905-8.00003-4⟩

Chapitre d'ouvrage hal-02906976v1

Biodiversité, évolution et fonctionnement des écosystèmes

Isabelle Arzul , Salvador Bailon , David Bass , Pierre Boudry , Philippe Béarez et al.

Crochet P.-A.; Rasplus J.-Y.; Selosse M.-A. Les Cahiers des prospectives, hors série, cnrs, pp.25-33., 2017, Les Cahiers des prospectives

Chapitre d'ouvrage halshs-03847162v1