Raphaël LAMI

44
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Publications

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Metabolic activities of marine ammonia‐oxidizing archaea orchestrated by quorum sensing

Olivier Pereira , Wei Qin , Pierre E. Galand , Didier Debroas , Raphaël Lami et al.
mLife, 2024, 3 (3), pp.417-429. ⟨10.1002/mlf2.12144⟩
Article dans une revue hal-04764378 v1
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Control of Staphylococcus epidermidis biofilm by surfactins of an endophytic bacterium Bacillus sp. 15 F

Marwa Jardak , Raphaël Lami , Oumaima Saadaoui , Hajer Jlidi , Didier Stien et al.
Enzyme and Microbial Technology, 2024, 180, pp.110477. ⟨10.1016/j.enzmictec.2024.110477⟩
Article dans une revue hal-04669449 v1
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Current and future chemical treatments to fight biodeterioration of outdoor building materials and associated biofilms: moving away from ecotoxic and towards efficient, sustainable solutions

Mattea Romani , Thomas Warscheid , Lionel Nicole , Lionel Marcon , Patrick Di Martino et al.
Science of the Total Environment, 2022, 802, pp.149846. ⟨10.1016/j.scitotenv.2021.149846⟩
Article dans une revue hal-03328324 v1
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A history of teaching in a marine laboratory, the Laboratoire Arago of Banyuls-sur-Mer

Raphaël Lami
Vie et Milieu / Life & Environment, 2022, 72 (3-4), pp.151-178. ⟨10.57890/VIEMILIEU/2022.72.3/4:151-178⟩
Article dans une revue hal-04183689 v1

Quorum sensing in biofilms: a key mechanism to target in ecotoxicological studies

Raphaël Lami , Laurent Urios , Maëlle Molmeret , Régis Grimaud
Critical Reviews in Microbiology, 2022, 49 (6), pp.786-804. ⟨10.1080/1040841X.2022.2142089⟩
Article dans une revue hal-03882166 v1
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Straightforward N -Acyl Homoserine Lactone Discovery and Annotation by LC–MS/MS-based Molecular Networking

Alice M S Rodrigues , Raphaël Lami , Karine Escoubeyrou , Laurent Intertaglia , Clément Mazurek et al.
Journal of Proteome Research, 2022, 21, pp.635-642. ⟨10.1021/acs.jproteome.1c00849⟩
Article dans une revue hal-03551975 v1
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Quorum Sensing Regulates Bacterial Processes That Play a Major Role in Marine Biogeochemical Cycles

Marion Urvoy , Claire Labry , Stéphane l'Helguen , Raphaël Lami
Frontiers in Marine Science, 2022, 9, pp.834337. ⟨10.3389/fmars.2022.834337⟩
Article dans une revue hal-03813925 v1
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Genomic and transcriptomic characterization of the Collimonas quorum sensing genes and regulon

Stephane Uroz , Océane Geisler , Laure Fauchery , Raphaël Lami , Alice M.S. Rodrigues et al.
FEMS Microbiology Ecology, 2022, 98 (11), ⟨10.1093/femsec/fiac100⟩
Article dans une revue hal-03915632 v1
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Digital Marine: An online platform for blended learning in a marine experimental biology module, the Schmid Training Course

Haley Flom , Maja Adamska , Raphaël Lami , Eve Gazave , Salvatore d'Aniello et al.
BioEssays, In press, ⟨10.1002/bies.202100264⟩
Article dans une revue hal-03628139 v1
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Quorum Sensing Regulates the Hydrolytic Enzyme Production and Community Composition of Heterotrophic Bacteria in Coastal Waters

Marion Urvoy , Raphaël Lami , Catherine Dreanno , Daniel Delmas , Stéphane L'Helguen et al.
Frontiers in Microbiology, 2021, 12, pp.780759. ⟨10.3389/fmicb.2021.780759⟩
Article dans une revue hal-03510738 v1
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Quorum sensing disruption regulates hydrolytic enzyme and biofilm production in estuarine bacteria

Marion Urvoy , Raphaël Lami , Catherine Dreanno , David Daudé , Alice M S Rodrigues et al.
Environmental Microbiology, 2021, 23 (11), pp.7183-7200. ⟨10.1111/1462-2920.15775⟩
Article dans une revue hal-03814177 v1

The Bacterial and Fungal Microbiota of Saccharina latissima (Laminariales, Phaeophyceae)

Anne Tourneroche , Raphaël Lami , Gaëtan Burgaud , Isabelle J. Domart-Coulon , Wei Li et al.
Frontiers in Marine Science, 2020, 7, ⟨10.3389/fmars.2020.587566⟩
Article dans une revue mnhn-03089362 v1
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Annotation and quantification of N-acyl homoserine lactones implied in bacterial quorum sensing by supercritical-fluid chromatography coupled with high-resolution mass spectrometry

Thi Phuong Thuy Hoang , Morgane Barthélemy , Raphaël Lami , Didier Stien , Véronique Eparvier et al.
Analytical and Bioanalytical Chemistry, 2020, 412 (10), pp.2261-2276. ⟨10.1007/s00216-019-02265-4⟩
Article dans une revue hal-03012250 v1
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Novel α-Hydroxy γ-Butenolides of Kelp Endophytes Disrupt Bacterial Cell-to-Cell Signaling

Marine Vallet , Yee-Meng Chong , Anne Tourneroche , Grégory Genta-Jouve , Cédric Hubas et al.
Frontiers in Marine Science, 2020, 7, pp.601. ⟨10.3389/fmars.2020.00601⟩
Article dans une revue hal-02909195 v1
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Description of Palleronia rufa sp. nov., a biofilm-forming and AHL-producing Rhodobacteraceae, reclassification of Hwanghaeicola aestuarii as Palleronia aestuarii comb. nov., Maribius pontilimi as Palleronia pontilimi comb. nov., Maribius salinus as Palleronia salina comb. nov., Maribius pelagius as Palleronia pelagia comb. nov. and emended description of the genus Palleronia

Claudie Barnier , Camille Clerissi , Raphaël Lami , Laurent Intertaglia , Philippe Lebaron et al.
Systematic and Applied Microbiology, 2020, 43 (1), pp.126018. ⟨10.1016/j.syapm.2019.126018⟩
Article dans une revue hal-02390411 v1

The Marine Bacterium Shewanella woodyi Produces C8-HSL to Regulate Bioluminescence

Mahmoud Hayek , Claudine Baraquet , Raphaël Lami , Yves Blache , Maëlle Molmeret
Microbial ecology, 2020, 79 (4), pp.865-881. ⟨10.1007/s00248-019-01454-z⟩
Article dans une revue hal-03603623 v1
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High bacterial diversity in pioneer biofilms colonizing ceramic roof tiles

Mattea Romani , Claire Carrion , Frédéric Fernandez , Laurent Intertaglia , David Pecqueur et al.
International Biodeterioration and Biodegradation, 2019, 144, pp.104745. ⟨10.1016/j.ibiod.2019.104745⟩
Article dans une revue hal-02262189 v1
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Bacterial–Fungal Interactions in the Kelp Endomicrobiota Drive Autoinducer-2 Quorum Sensing

Anne Tourneroche , Raphaël Lami , Cédric Hubas , Elodie Blanchet , Marine Vallet et al.
Frontiers in Microbiology, 2019, 10, pp.1693. ⟨10.3389/fmicb.2019.01693⟩
Article dans une revue hal-02277573 v1
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Sea anemone and clownfish microbiota diversity and variation during the initial steps of symbiosis

Natacha Roux , Raphaël Lami , Pauline Salis , Kevin Magré , Pascal Romans et al.
Scientific Reports, 2019, 9 (1), pp.19491. ⟨10.1038/s41598-019-55756-w⟩
Article dans une revue hal-02468924 v1
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Evidence of a Large Diversity of <i>N</i>-acyl-Homoserine Lactones in Symbiotic <i>Vibrio fischeri</i> Strains Associated with the Squid <i>Euprymna scolopes</i>

Léa Girard , Elodie Blanchet , Didier Stien , Julia Baudart , Marcelino Suzuki et al.
Microbes and environments / JSME, 2019, 34 (1), pp.99-103. ⟨10.1264/jsme2.ME18145⟩
Article dans une revue hal-02331764 v1
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Large Diversity and Original Structures of Acyl-Homoserine Lactones in Strain MOLA 401, a Marine Rhodobacteraceae Bacterium

Margot Doberva , Didier Stien , Jonathan Sorres , Nathalie Hue , Sophie Sanchez-Ferandin et al.
Frontiers in Microbiology, 2017, 8, pp.1152. ⟨10.3389/fmicb.2017.01152⟩
Article dans une revue hal-01556563 v1
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Characterization of N-Acyl Homoserine Lactones in Vibrio tasmaniensis LGP32 by a Biosensor-Based UHPLC-HRMS/MS Method

Léa Girard , Élodie Blanchet , Laurent Intertaglia , Julia Baudart , Didier Stien et al.
Sensors, 2017, 17 (4), pp.906 ⟨10.3390/s17040906⟩
Article dans une revue hal-01513879 v1
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Pau-Brasil, l’arbre qui donna son nom au Brésil

Raphaël Lami , Laura Gabriela Nisembaum , Anne Tourneroche
ESpèces - Revue d’Histoire naturelle , 2017, Étranges insulaires, 24, pp.34
Article dans une revue hal-02906974 v1
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Quorum Sensing and Quorum Quenching in the Mediterranean Seagrass Posidonia oceanica Microbiota

Elodie Blanchet , Soizic Prado , Didier Stien , Jocivânia Oliveira da Silva , Yoan Ferandin et al.
Frontiers in Marine Science, 2017, 4, pp.218. ⟨10.3389/fmars.2017.00218⟩
Article dans une revue hal-02906989 v1

Influence of PAHs among other coastal environmental variables on total and PAH-degrading bacterial communities

Caroline Sauret , Marc Tedetti , C. Guigue , Chloé Dumas , Raphaël Lami et al.
Environmental Science and Pollution Research, 2016, 23 (5), pp.4242-4256. ⟨10.1007/s11356-015-4768-0⟩
Article dans une revue hal-01278782 v1
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Quorum sensing and quorum quenching in the phycosphere of phytoplankton: a case of chemical interactions in ecology

Jean-Luc Rolland , Didier Stien , Sophie Sanchez-Ferandin , Raphaël Lami
Journal of Chemical Ecology, 2016, 42 (12), pp.1201-1211. ⟨10.1007/s10886-016-0791-y⟩
Article dans une revue hal-01472696 v1
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Marinobacter Dominates the Bacterial Community of the Ostreococcus tauri Phycosphere in Culture

Josselin Lupette , Raphaël Lami , Marc Krasovec , Nigel Grimsley , Hervé Moreau et al.
Frontiers in Microbiology, 2016, 7, pp.1414. ⟨10.3389/fmicb.2016.01414⟩
Article dans une revue hal-01373902 v1
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La forêt de Fontainebleau: quand la biodiversité inspire les artistes

Raphaël Lami , Rémi Salaün
ESpèces - Revue d’Histoire naturelle , 2016, Terres et mers australes. Vivre dans un monde extrême, 21
Article dans une revue hal-02906979 v1
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Summer Abundance and Distribution of Proteorhodopsin Genes in the Western Arctic Ocean

Dominique Boeuf , Raphaël Lami , Emelyne Cunnington , Christian Jeanthon
Frontiers in Microbiology, 2016, 7, pp.1584. ⟨10.3389/fmicb.2016.01584⟩
Article dans une revue hal-01391017 v1
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Diversity of quorum sensing autoinducer synthases in the Global Ocean Sampling metagenomic database

Margot Doberva , Sophie Sanchez-Ferandin , Eve Toulza , Philippe Lebaron , Raphaël Lami
Aquatic Microbial Ecology, 2015, 74 (2), pp.107-119. ⟨10.3354/ame01734⟩
Article dans une revue hal-01141144 v1
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Genome Sequence of the Sponge-Associated Ruegeria halocynthiae Strain MOLA R1/13b, a Marine Roseobacter with Two Quorum-Sensing-Based Communication Systems

Margot Doberva , Sophie Sanchez-Ferandin , Yoan Ferandin , Laurent Intertaglia , Julie Croué et al.
Genome Announcements, 2014, 2 (5), pp.e00998-14. ⟨10.1128/genomeA.00998-14⟩
Article dans une revue hal-01228529 v1
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Genome Sequence of Maribius sp. Strain MOLA 401, a Marine Roseobacter with a Quorum-Sensing Cell-Dependent Physiology

Margot Doberva , Sophie Sanchez-Ferandin , Yoan Ferandin , Laurent Intertaglia , Fabien Joux et al.
Genome Announcements, 2014, 2 (5), pp.e00997-14. ⟨10.1128/genomeA.00997-14⟩
Article dans une revue hal-01214297 v1
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Diurnal expression of SAR11 proteorhodopsin and 16S rRNA genes in coastal North Atlantic waters

Raphaël Lami , David L. Kirchman
Aquatic Microbial Ecology, 2014, 73 (3), pp.185-194. ⟨10.3354/ame01716⟩
Article dans une revue hal-02906988 v1
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Arsenite modifies structure of soil microbial communities and arsenite oxidization potential

Raphaël Lami , L. Camille Jones , Matthew Cottrell , Brandon J. Lafferty , M. Ginder-Vogel et al.
FEMS Microbiology Ecology, 2013, 84 (2), pp.270-279. ⟨10.1111/1574-6941.12061⟩
Article dans une revue hal-02909471 v1
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Seasonal dynamics of aerobic anoxygenic phototrophs in a Mediterranean coastal lagoon

D Lamy , P de Carvalho-Maalouf , M. T. Cottrell , Raphaël Lami , P. Catala et al.
Aquatic Microbial Ecology, 2011, 62 (2), pp.153-163. ⟨10.3354/ame01467⟩
Article dans une revue hal-02906986 v1
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Annual patterns of presence and activity of marine bacteria monitored by 16S rDNA–16S rRNA fingerprints in the coastal NW Mediterranean Sea

Raphaël Lami , Jf Ghiglione , Y. Desdevises , N West , P. Lebaron
Aquatic Microbial Ecology, 2009, 54, pp.199-210. ⟨10.3354/ame01264⟩
Article dans une revue hal-02906983 v1
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Distribution of free-living and particle-attached aerobic anoxygenic phototrophic bacteria in marine environments

Raphaël Lami , Z Âuperová , J. Ras , P. Lebaron , M Koblíïek
Aquatic Microbial Ecology, 2009, 55, pp.31-38. ⟨10.3354/ame01282⟩
Article dans une revue hal-02906984 v1
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Biochemical characteristics and bacterial community structure of the sea surface microlayer in the South Pacific Ocean

I. Obernosterer , P. Catala , R. Lami , J. Caparros , J. Ras et al.
Biogeosciences, 2008, 5 (3), pp.693-705. ⟨10.5194/bg-5-693-2008⟩
Article dans une revue hal-01248038 v1

Short-term investigation of interactions of plain concrete, marine microorganisms, and sea water for the application of Floating Offshore Wind Turbines (FOWTs)

Deeksha Margapuram , Marie Salgues , Fabrice Deby , Raphaël Lami , Benjamin Erable et al.
10th International Conference on Concrete Under Severe Loading Conditions – Environment & Loading, CONSEC, Sep 2024, Chennai, India
Communication dans un congrès hal-04973603 v1

Comment conduire la lutte antifouling de manière durable et écologique ? Un enjeu majeur pour l'avenir des océans.

Raphaël Lami
Christophe Prazuck. 30 questions sur l’océan: La Sorbonne et la mer, Sorbonne, 2022, Sorbonne Essais, 979-10-231-0734-0
Chapitre d'ouvrage hal-03915702 v1
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Marine Bacterial Models for Experimental Biology

Raphaël Lami , Regis. Grimaud , Sophie Sanchez-Brosseau , Christophe Six , François Thomas et al.
Handbook of Marine Model Organisms in Experimental Biology, 1, CRC Press, pp.1-26, 2021, ⟨10.1201/9781003217503-1⟩
Chapitre d'ouvrage hal-04059671 v2
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Quorum sensing in marine biofilms and environments

Raphaël Lami
Academic Press. Quorum Sensing, pp.55-96, 2019, ⟨10.1016/B978-0-12-814905-8.00003-4⟩
Chapitre d'ouvrage hal-02906976 v1

Biodiversité, évolution et fonctionnement des écosystèmes

Isabelle Arzul , Salvador Bailon , David Bass , Pierre Boudry , Philippe Béarez et al.
Crochet P.-A.; Rasplus J.-Y.; Selosse M.-A. Les Cahiers des prospectives, hors série, cnrs, pp.25-33., 2017, Les Cahiers des prospectives
Chapitre d'ouvrage halshs-03847162 v1