RL
Raphael Leblois
chercheur CRCN INRAE au CBGP, département SPE
107
Documents
Présentation
**Raphaël Leblois E-mail : <raphael.leblois@inrae.fr>**
**Centre de Biologie pour la Gestion des Populations (CBGP)**
**UMR 1062 INRA-IRD-CIRAD-SupAgro**
755 avenue du campus Agropolis,
Campus International de Baillarguet CS 30016
34980 Montferrier-sur-Lez cedex, France
tél : +33 (0)4 99 62 33 31 fax : +33 (0)4 99 62 33 45<a name="_Toc132452540"></a><a name="_Toc132452446"></a><a name="_Toc124759601"></a><a name="_Toc124758305"></a><a name="_Toc124758178"></a><a name="_Toc124683779"></a>
ORCHID : 0000-0002-3051-4497 idHAL : raphael-leblois
**Present Position**
Sept 2010 – Today**Researcher (CRCN)** at the Center for Biology and Management of Populations, National Institute for Agronomical Research (CBGP - INRA), Montpellier, France
**Education & Research Trainings & Past Positions**
2012 – 2017
**Member of the "Institut de Biologie Computationnelle" IBC** a multidisciplinary project center supported by the "Investissements d'Avenir" call from the French National Research Agency (ANR), Montpellier, France
2006-2010
**Assistant Professor (« Maitre de conférence »)**at the National Museum of Natural History of Paris (MNHN).
2005-2006
**PostDoc (6 months):**« *Multilocus genetic analyses and demographic inferences with applications to human populations from Central Asia*» with Pr. Evelyne Heyer et Dr. Renaud Vitalis, Musée de l’Homme - MNHN, Paris, France.
2004-2005
**PostDoc, Lavoisier grant (1 year):«** *Bottleneck detection and inference of the number of founding individuals from SNPs markers* **»**, with Pr. Montgomery Slatkin, University of California, Berkeley, United-States.
2000-2004
**PhD in Integrative Biology (3 ½ years): «** *Inference of dispersal parameters from genetic data in subdivided populations* **»** under the supervision of Dr. François Rousset and Dr. Arnaud Estoup. Montpellier Supagro – University of Montpellier II, France.
1999-2000
**MSc in Evolutionary Biology and Ecology, 6 months project:** « *Simulation study of the influence of mutational and demographic factors on the inference of demographic parameters from individual microsatellite genotypes* » under the supervision of Dr. François Rousset et Dr. Arnaud Estoup. Montpellier Supagro – University of Montpellier II.
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FRENCH: Mother language
English: Read, written and spoken.
### Editorial activities and scientific expertise
Regular referee for: *Cladistic, Conservation Biology, Ecography, Ecology Letters, eLife, Evolutionnary Applications, Evolutionary Ecology Research, Forest Ecology and Management,* *Genetics, Heredity, Human Biology, Mitochondrial DNA, Molecular Ecology,* and *Molecular Ecology Resources, New Phytologist, Plant Ecology, PLosOne, Proceedings of the Royal Society London.* Member of the *Peer Community in Evolutionary Biology*.
My strategy is to review with application between 3 and 5 publications per year, which roughly corresponds to my scientific production. In the current scientific context, with a strong increase of publication number, I prefer to do it that way and put quality ahead of quantity!
Expertise in theoretical and applied population genetics, conservation genetics, inference of dispersal, modelling in population genetics, coalescent theory.
### Funding
· 2020-2024: **ANR**, with P.-A. Crochet et al., “**INTROSPEC:** *Genomic consequences and evolutionary causes of introgression in the late stages of speciation*”*.* 517 k€
· 2020-2022: **LabEx CeMEB**, with M.-P. Chapuis, “**proLag:** *Proof of concept in Landscape genomics: from NGS data production to demographic inferences*”*.* 20 k€
· 2018-2021: **LabEx CeMEB**, with C. Brouat & C. Smadja, “**SPEED:** *DoeS PErsonality Explain spatial spreaD of invasive wild mice in Senegal? Behavioral ecology and population genomics approaches*”*.* 26 k€
· 2017-2020: **LabEx CeMEB**, with g. Ganem & C. Brouat, “**D****‐RANGE:** *Environmental and evolutionary Drivers of species distributions and RANGE limits*”*.* 26 k€
· 2017-2021: **ANR**, with S. Guindon, “**GenoSpace:** *Improved statistical approaches for the analysis of biodiversity using genetic and spatial data*”*.* 140 k€
· 2014: Young researcher project, funding from the **IBC (Institute of Computational Biology**, see below**)**, with P. Pudlo, “*Using haplotype lengths and linkage disequilibrium to infer the demographic history of populations* *from genomic data.*”*.* 10 k€
· 2013: First Funding for exploratory projects (PROJET EXPLORATOIRE PREMIER SOUTIEN: **PEPS**), **University of Montpellier**, with P. Pudlo, “*Understanding emerging diseases and epidemics: models, evolution, history and society*”, 10 k€
· 2012-2017: participant to the **PIA “IBC”** with O. Gascuel (Projet Investissement d’Avenir “Institut de Biologie Computationelle”). Around 2-5 k€ per year for Master students, publication fees and Missions.
· 2010-2014: **ANR**, with S. Planes et al., “**IM-MODEL@CORALFISH:** *An isolation-migration model of the history of coral reef fish communities: theory and data*”*.* 500 k€
· 2010-2014: **ANR**, with C. Denys et al., “**MOHMIE:** ***Mo****dern **H**uman installation in **M**orocco **I**nfluence on the small terrestrial vertebrate biodiversity and its **E**volution*”*.* 809 k€
· 2009-2013: **ANR**, with J. -M. Cornuet et al., “**EMILE:** *Inference methods and software’s for Evolution*”*.* 372 k€
· 2008-2011: **CNRS Amazonia**, with H. Fréville and C. Scotti-Saintagne, “**CLIPS***: Past climate change and ecological specialization in tropical species: input from population genetic approaches”.* 100 k€
· 2008-2010: **ANR**, with P. Grandcolas et al., “**BioNeoCal:** *Endemism in New Caledonia: phylogenetic and population study of its emergence”.*940 k€
· 2007: **MNHN -** **Bonus Qualité Recherche,** R. Leblois **: *«*** *Computer station for the development of inference methods from genetic data »*. 4k€
· 2007-2009: **MNHN - Bonus Qualité Recherche**, with E. Porcher et al. **:** *« Using DNA Barcode data to measure phylogenetic biodiversity in plant communities ».* 32k€
### Teaching
2006-Today: between 30 and 50h per year of population genetic teaching in various modules for 1st and 2d year Master students: population genetic data analysis, inference of demographic parameters, coalescent theory and DNA Barcoding.
2013-Today: co-organisation, with F. Rousset, of one week course for Master students in Biostatistics: “Population genetic models” (Master Biostatistique, University Montpellier).
2010-2018: co-organisation, with R. Vitalis, of one week course for Masters (2d year) and PhD students: “Data analyses in population genetics” (Master B2E - Parcours Darwin, University Montpellier).
2010-Today: co-organisation, with R. Vitalis, of one week course for Masters (1st year): “Data analyses in population genetics” (European Master MEME, University Montpellier).
Participation to the MEME cohort selection with Y. Michalakis, R. Vitalis & O. Katz.
2006-2010: co-organisation, with R. Vitalis and E. Heyer, of one week course for Master students (Ecole Doctorale ParisVI-ParisVII-MNHN): “Molecular population genetics and coalescent theory”
### Collective and administrative activities
2013-Today: Member of the scientific and organizing comity of MCEB congresses (Mathematical and Computational Evolutionary Biology).
2014-2019: Member of the user scientific comity of Migale (INRAe national computing and bio-informatic platform).
2014-2015: Member of the GAS "Groupe d'Animation Scientifique" of the CBGP.
2014-2016 and 2018-2020: Member of the "conseil d'unité CU" of the CBGP.
2011-2015: Scientific manager of the CBGP computer cluster (132 nodes, CBGP technical platform).
2008-2010: Internal seminar organisations at the “Origine, Structure and Evolution of biodiversity” lab (OSEB, MNHN, UMR 7205).
2008-2010: Scientific manager of the Museum computer cluster (76 nodes, MNHN, UMS 2700).
2007-2010: Member of the "conseil d'unité CU" of the “Origine, Structure and Evolution of biodiversity” lab (OSEB, MNHN, UMR 7205).
Publications
Population genetics as a tool for conservation biology: defining management units for the greater horseshoe bat8. European Congress of Mammalogy, Sep 2019, Warsaw, Poland
Communication dans un congrès
hal-02790960v1
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Conservation et écologie du Grand rhinolophe: Que nous apprennent les analyses moléculaires?17. Rencontre Nationale des Chauves-Souris, Mar 2018, Bourges, France
Communication dans un congrès
hal-02785155v1
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Allochronic differentiation in the pine processionary moth: possible impacts of past and future climate changesInternational Processionary Meeting, Dec 2018, Hammamet, Tunisia
Communication dans un congrès
hal-02788464v1
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Taxonomie des Acanthodactyles à queue rouge (Acanthodactylus erythrurus, Squamata) : une approche intégrative révèle la diversité cryptique dans l’Atlas marocainCo-meeting: 6. Congrès Franco-Tunisien de Zoologie, 6. Congrès Franco-Maghrébin de Zoologie et 119. Journées Annuelles de la Societé Zoologique de France, Nov 2018, Paris, France
Communication dans un congrès
hal-02786568v1
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Développement et optimisation d’un outils de simulation en c++ de données génomique en populations spécialisésPrintemps de Baillarguet, Institut National de Recherche Agronomique (INRA). UMR Centre de Biologie pour la Gestion des Populations (1062)., May 2018, Montferrier sur Lez, France
Communication dans un congrès
hal-02735977v1
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Population genetics of the greater horseshoe bat (R. ferrumequinum) in Western France14. European Bat Research Symposium, Aug 2017, San Sebastian, Spain
Communication dans un congrès
hal-02785519v1
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Landscape population genetics of the greater horse-shoe bat (R. ferrumequinum) in West-Eastern France14. European Bat Research Symposium, Aug 2017, San Sebastian, Spain
Communication dans un congrès
hal-02786746v1
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A reassessment of explanations for discordant introgressions of mitochondrial and nuclear genomesApproche Interdisciplinaire en Évolution, GDR 3765 AIEM, Nov 2016, Saint-Martin-de-Londres, France
Communication dans un congrès
hal-02932428v1
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Detecting past contraction in population size using runs of homozygosity48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France
Communication dans un congrès
hal-02932426v1
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Comparative phylogeography and population genetic structure of 10 widespread small vertebrate species in Morocco6.Congrès international Barcode of Life, Aug 2015, Guelph, Canada. pp.1
Communication dans un congrès
hal-02743116v1
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Histoire géographique et démographique de l’espèce de rongeur Meriones shawii en Afrique du NordApproche Intégrative de la 6ème Extinction (Restitution du projet ANR MOHMIE), Apr 2014, Paris, France
Communication dans un congrès
hal-03025617v1
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Inference of past changes in population size from genetic data : Test of a new method and application to real dataCongress ”Integrative study of the 6th extinction”, MNHN, Apr 2014, Paris, France
Communication dans un congrès
hal-02932421v1
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The Migraine project : A user- friendly software for likelihood-based inferences of spatial structure and demographic history from genetic dataSummer Research School "Software and Statistical methods for population genetics", Jun 2013, Aussois, France
Communication dans un congrès
hal-02803141v1
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Incipient allochronic speciation in the pine processionary moth: molecular analysis of a divergent populationCongress of the European Society for Evolutionary Biology, Aug 2013, Lisbon, Portugal
Communication dans un congrès
hal-02932411v1
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Nuclear genetic structure of the bank vole (Myodes glareolus) in Fennoscandia with an emphasis on the mitochondrial contact zones – Preliminary resultsEDENext 2013, Mar 2013, Bellaterra, Spain
Communication dans un congrès
hal-02932410v1
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Nuclear genetic structure of the bank vole (Myodes glareolus) in Fennoscandia with an emphasis on the mitochondrial contact zonesThe 11th International Mammalogical Congress, Aug 2013, Belfast, Ireland
Communication dans un congrès
hal-02932418v1
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Allochronic differentiation of a pine processionary moth population in Portugal: evolutionary scenario based on neutral markersMEDINSECT3, Jun 2012, Hammamet, Tunisia
Communication dans un congrès
hal-02932402v1
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Empirical likelihood for Bayesian inference in population geneticsMathematical and Computational Evolutionnary Biology 2012, Jun 2012, Montpellier, France
Communication dans un congrès
hal-02932407v1
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Likelihood-based inférence under spatial structure and demographic changes: the Migraine projectMathematical and Computational Evolutionnary Biology 2012, Jun 2012, Montpellier, France
Communication dans un congrès
hal-02932404v1
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Processus neutres et introgression cyto-nucléaire discordante34. Réunion annuelle du Groupe d’Etude de Biologie et Génétique des Populations (Petit Pois Déridé 2012), Aug 2012, Avignon, France
Communication dans un congrès
hal-02748562v1
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Inference of demographic parameters from genetic data using importance sampling algorithm on coalescent historiesCongress « Statistiques du Sud », Jun 2010, Mèze, France
Communication dans un congrès
hal-02932394v1
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Likelihood-based inference of dispersal rates from patterns of genetic diversity38th Congress if the Canadian Statistical Society, Jun 2010, Québec, Canada
Communication dans un congrès
hal-02932398v1
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Guns, Germs and Dogs: on the origin of Leishmania chagasi4th international symposium on Leishmania, Feb 2009, Lucknow, India
Communication dans un congrès
hal-02932433v1
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Demographic inferences under isolation by distance: Why some methods are more robust than others?Dispersion day (École Nationale du Génie Rural des Eaux et des Forêts), Apr 2008, Paris, France
Communication dans un congrès
hal-02932392v1
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What is the molecular signature of speciation eventsInternational EMBO Workshop on “Molecular Biodiversity and DNA Barcode”, May 2007, Rome, Italy
Communication dans un congrès
hal-02932389v1
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Why isolation by distance is a realistic model for spatial population geneticsInternational "Conservation genetics Symposium" at the American Museum of Natural History, Dec 2007, New-York, United States
Communication dans un congrès
hal-02932434v1
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Comparing phylogenetic and statistical classification methods for DNA barcodingIn Second International Barcode of Life Conference. Consortium for the Barcode of Life, Sep 2007, Taipei, Taiwan
Communication dans un congrès
hal-02757822v1
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DNA Barcode analysis in nascent species : comparing phylogenetic and statistical classification methodsDNA Barcoding in Europe European Distributed Institute of Taxonomy, Oct 2007, Leiden, Netherlands. 1 p
Communication dans un congrès
hal-02822639v1
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Inference of demographic parameters : isolation by distance, maximum likelihood and bayesian approachesInternational Workshop on „Advances in molecular evolutionary ecology: statistical tools to unravel evolutionary processes in natural populations“, Nov 2006, Munich, Germany
Communication dans un congrès
hal-02932436v1
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Inference of demographic parameters under isolation by distance: what can we do now2nd International Congress on DNA Polymorphisms in Human Populations, Dec 2003, Paris, France
Communication dans un congrès
hal-02932438v1
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Rapport final du projet MOHMIE (ANR-09-PEXT-0004 - 2009) (dir. C. Denys)[Contrat] Museum National d'Histoire Naturelle (MNHN). 2014
Rapport
hal-02982066v1
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Inférence en génétique spatiale des populations vue par le prisme de la coalescenceGénétique des populations [q-bio.PE]. Université de Montpellier, 2024
HDR
tel-04316177v1
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