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Optimization and Evaluation of the bestRAD Sequencing Approach: Towards Ascertainment of the Invasion Routes of the Oriental Fruit Fly, <i>Bactrocera dorsalis</i>
Emeline Charbonnel
,
Laure Benoit
,
Sabine Nidelet
,
Enrique Ortega‐abboud
,
Bernhard Gschloessl
et al.
Article dans une revue
hal-05036480
v1
|
|
A matrix-analytical sampling formula for time-homogeneous coalescent processes under the infinite sites mutation model
Asger Hobolth
,
Simon Boitard
,
Andreas Futschik
,
Raphael Leblois
Article dans une revue
hal-05030389
v2
|
|
Comparative population genetics of habitat-forming octocorals in two marine protected areas: eco-evolutionary and management implications
Mathilde Horaud
,
Rosana Arizmendi-Meija
,
Elisabet Nebot-Colomer
,
Paula López‐Sendino
,
Agostinho Antunes
et al.
Article dans une revue
hal-04243162
v1
|
|
Combining RADseq and contact zone analysis to decipher cryptic diversification in reptiles: Insights from the Spiny‐footed Lizard (Reptilia, Lacertidae)
Paul Doniol-Valcroze
,
Loïs Rancilhac
,
José Carlos Brito
,
Aurélien Miralles
,
Philippe Geniez
et al.
Article dans une revue
hal-04202849
v1
|
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Direct and indirect estimates of dispersal support strong juvenile philopatry and male‐biased dispersal in a freshwater turtle species (<i>Emys orbicularis</i>)
Rémi Fay
,
Sébastien Ficheux
,
Arnaud Béchet
,
Aurélien Besnard
,
Pierre-André Crochet
et al.
Article dans une revue
hal-04233962
v1
|
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Phylogeographic breaks and how to find them: An empirical attempt at separating vicariance from isolation by distance in a lizard with restricted dispersal
Loïs Rancilhac
,
Aurélien Miralles
,
Philippe Geniez
,
Daniel Mendez-Aranda
,
Menad Beddek
et al.
Article dans une revue
hal-04714429
v1
|
|
Searching for genetic evidence of demographic decline in an arctic seabird: beware of overlapping generations
Emeline Charbonnel
,
Claire Daguin-Thiébaut
,
Lucille Caradec
,
Eléonore Moittié
,
Olivier Gilg
et al.
Article dans une revue
hal-03658284
v1
|
|
Agricultural intensification alters marbled newt genetic diversity and gene flow through density and dispersal reduction
Bertrand Gauffre
,
Alexandre Boissinot
,
Vincent Quiquempois
,
Raphael Leblois
,
Pierre Grillet
et al.
Article dans une revue
hal-03436626
v1
|
|
Translocations maintain genetic diversity and increase connectivity in sea otters, Enhydra lutris
Shawn Larson
,
Roderick B. Gagne
,
Jim Bodkin
,
Michael J. Murray
,
Katherine Ralls
et al.
Article dans une revue
hal-04714564
v1
|
|
GSpace: an exact coalescence simulator of recombining genomes under isolation by distance
Thimothée Virgoulay
,
François Rousset
,
Camille Noûs
,
Raphaël Leblois
Article dans une revue
(data paper)
hal-03229110
v1
|
|
Gradients of genetic diversity and differentiation across the distribution range of a Mediterranean coral: Patterns, processes and conservation implications
Jean‐Baptiste Ledoux
,
Raouia Ghanem
,
Mathilde Horaud
,
Paula López-Sendino
,
Valèria Romero Soriano
et al.
Article dans une revue
hal-03352367
v2
|
|
From sympatry to parapatry: a rapid change in the spatial context of incipient allochronic speciation
Christian Burban
,
Susana Rocha
,
Raphaël Leblois
,
Jean-Pierre Rossi
,
Laure Saune
et al.
Article dans une revue
hal-02624010
v1
|
|
Sampling schemes and drift can bias admixture proportions inferred by structure
Ken S. Toyama
,
Pierre-André Crochet
,
Raphaël Leblois
Article dans une revue
hal-02924101
v1
|
|
Morphology and multilocus phylogeny of the Spiny-footed Lizard (Acanthodactylus erythrurus) complex reveal two new mountain species from the Moroccan Atlas
Aurélien Miralles
,
Philippe Geniez
,
Menad Beddek
,
Daniel Mendez Aranda
,
José Carlos Brito
et al.
Article dans une revue
hal-02524382
v1
|
|
Quaternary terrestrial microvertebrates from mediterranean northwestern Africa: State-of-the-art focused on recent multidisciplinary studies
Emmanuelle Stoetzel
,
Aude Lalis
,
Violaine Nicolas
,
Stéphane Aulagnier
,
Touria Benazzou
et al.
Article dans une revue
(article de synthèse)
hal-02380618
v1
|
|
Population genetics and historical demographic inferences of the blue crab Callinectes sapidus in the US based on microsatellites
Danielle Macedo
,
Isabel Caballero
,
Mariana Mateos
,
Raphaël Leblois
,
Shelby Mccay
et al.
Article dans une revue
hal-02619696
v1
|
|
Integrating population genetics to define conservation units from the core to the edge of Rhinolophus ferrumequinum western range
Orianne Tournayre
,
Jean-Baptiste Pons
,
Maxime Leuchtmann
,
Raphaël Leblois
,
Sylvain Piry
et al.
Article dans une revue
hal-02621425
v1
|
|
Limited genetic structure and demographic expansion of the Brassicogethes aeneus populations in France and in Europe
Amandine Juhel
,
Corentin Barbu
,
Muriel Valantin-Morison
,
Bertrand Gauffre
,
Raphaël Leblois
et al.
Article dans une revue
hal-02619087
v1
|
|
Likelihood computation and inference of demographic and mutational parameters from population genetic data under coalescent approximations
Francois Rousset
,
Champak Reddy Beeravolu
,
Raphaël Leblois
Journal de la Société Française de Statistique, 2018, 159 (3), pp.142-166
Article dans une revue
hal-01998088
v1
|
|
Crossing the Mid-Aegean Trench: vicariant evolution of the Eastern pine processionary moth, Thaumetopoea wilkinsoni (Lepidoptera: Notodontidae), in Crete
Dimitrios Petsopoulos
,
Raphaël Leblois
,
Laure Saune
,
Kahraman Ipekdal
,
Filippos A. Aravanopoulos
et al.
Article dans une revue
hal-02621677
v1
|
|
Postglacial range expansion shaped the spatial genetic structure in a marine habitat-forming species: Implications for conservation plans in the Eastern Adriatic Sea
Jean-Baptiste Ledoux
,
Maša Frleta-Valić
,
Silvija Kipson
,
Agostinho Antunes
,
Emma Cebrian
et al.
Article dans une revue
hal-02624223
v1
|
|
Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish
R. A. Coleman
,
Bertrand Gauffre
,
A. Pavlova
,
L. B. Beheregaray
,
J. Kearns
et al.
Article dans une revue
hal-03516857
v1
|
|
Deciphering the demographic history of allochronic differentiation in the pine processionary moth Thaumetopoea pityocampa
Raphaël Leblois
,
Mathieu Gautier
,
Audrey Rohfritsch
,
Julien Foucaud
,
Christian Burban
et al.
Article dans une revue
hal-02626319
v1
|
|
Measuring Genetic Differentiation from Pool-seq Data
Valentin Hivert
,
Raphael Leblois
,
Eric Petit
,
Mathieu Gautier
,
Renaud Vitalis
Article dans une revue
hal-01936905
v1
|
|
Genetic structure and invasion history of the house mouse (Mus musculus domesticus) in Senegal, West Africa: a legacy of colonial and contemporary times.
Cédric Lippens
,
A. Estoup
,
M.K. Hima
,
Anne Loiseau
,
Caroline Tatard
et al.
Article dans une revue
hal-01576202
v1
|
|
Demographic inference through approximate-Bayesian-computation skyline plots
Miguel Navascués
,
Raphaël Leblois
,
Concetta Burgarella
Article dans une revue
hal-01741290
v1
|
|
A reassessment of explanations for discordant introgressions of mitochondrial and nuclear genomes
Timothée Bonnet
,
Raphael Leblois
,
François Rousset
,
Pierre-André Crochet
Evolution - International Journal of Organic Evolution, 2017, 71 (9), pp.2140-2158. ⟨10.1111/evo.13296⟩
Article dans une revue
hal-01801897
v1
|
|
Resampling: an improvement of Importance Sampling in varying population size models
Coralie Merle
,
Raphaël Leblois
,
François Rousset
,
Pierre Pudlo
Article dans une revue
hal-01270437
v1
|
|
Genetic diversity and structure related to expansion history and habitat isolation: stone marten populating rural-urban habitats
Anna Wereszczuk
,
Raphaël Leblois
,
Andrzej Zalewski
Article dans une revue
hal-02625453
v1
|
|
New molecular data favour an anthropogenic introduction of the wood mouse (<em>Apodemus sylvaticus</em>) in North Africa
Aude Lalis
,
Raphaël Leblois
,
Sohaib Liefried
,
Ali Ouarour
,
Champak Beeravolu Reddy
et al.
Journal of Zoological Systematics and Evolutionary Research, 2016, 54 (1), pp.1 - 12. ⟨10.1111/jzs.12111⟩
Article dans une revue
hal-02632927
v1
|
|
Conservation of the endangered Mediterranean tortoise Testudo hermanni hermanni: The contribution of population genetics and historical demography
Saliha Zenboudji-Beddek
,
Marc Cheylan
,
Véronique Arnal
,
Albert Bertolero
,
Raphaël Leblois
et al.
Article dans une revue
hal-04864057
v1
|
|
Phylogeography and demographic history of Shaw's Jird ( Meriones shawii complex) in North Africa
Aude Lalis
,
Raphaël Leblois
,
Emmanuelle Stoetzel
,
Touria Benazzou
,
Karim Souttou
et al.
Article dans une revue
hal-02401512
v1
|
|
Black rat invasion of inland Sahel: insights from interviews and population genetics in south-western Niger
Karine Berthier
,
Madougou Garba
,
Raphael Leblois
,
Miguel Navascués
,
Caroline Tatard
et al.
Article dans une revue
hal-01463818
v1
|
|
Evidence for low-level hybridization between two allochronic populations of the pine processionary moth, Thaumetopoea pityocampa (Lepidoptera: Notodontidae)
Christian Burban
,
Mathieu Gautier
,
Raphaël Leblois
,
Julie Landes
,
Helena Santos
et al.
Article dans une revue
hal-02633820
v1
|
|
Genetic structure of a vulnerable species, the freshwater blenny (<em>Salaria fluviatilis</em>)
Martin Laporte
,
Raphaël Leblois
,
Aurélie Coulon
,
François Bonhomme
,
Pierre Magnan
et al.
Article dans une revue
hal-02633160
v1
|
|
New reptile records from Morocco and Western Sahara.
Pierre-André Crochet
,
Raphaël Leblois
,
Julien Renoult
Herpetology Notes, 2015, 8, pp.583-588
Article dans une revue
hal-02932241
v1
|
|
Congruent signals of population history but radically different patterns of genetic diversity between mitochondrial and nuclear markers in a mountain lizard
Anne-Laure Ferchaud
,
Rémy Eudeline
,
Véronique Arnal
,
Marc Cheylan
,
Gilles Pottier
et al.
Article dans une revue
istex
hal-02630586
v1
|
|
Spatial heterogeneity in landscape structure influences dispersal and genetic structure: empirical evidence from a grasshopper in an agricultural landscape
Bertrand Gauffre
,
Sophie Mallez
,
Marie Pierre Chapuis
,
Raphaël Leblois
,
Isabelle Litrico
et al.
Article dans une revue
istex
hal-01181310
v1
|
|
Blacktip reef sharks, <em>Carcharhinus melanopterus</em>, have high genetic structure and varying demographic histories in their Indo-Pacific range
Thomas M. Vignaud
,
Johann Mourier
,
Jeffrey A. Maynard
,
Raphaël Leblois
,
Julia Spaet
et al.
Article dans une revue
istex
hal-02631664
v1
|
|
Genetic structure of populations of whale sharks among ocean basins and evidence for their historic rise and recent decline
Thomas M. Vignaud
,
Jeffrey A. Maynard
,
Raphaël Leblois
,
Mark G. Meekan
,
Ricardo Vazquez-Juarez
et al.
Article dans une revue
istex
hal-02630929
v1
|
|
DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data.
Jean-Marie Cornuet
,
Pierre Pudlo
,
Julien Veyssier
,
Alexandre Dehne-Garcia
,
Mathieu Gautier
et al.
Article dans une revue
hal-01337243
v1
|
|
Maximum-Likelihood Inference of Population Size Contractions from Microsatellite Data
Raphaël Leblois
,
Pierre Pudlo
,
Néron Joseph
,
François Bertaux
,
Champak Reddy Beeravolu
et al.
Article dans une revue
hal-02087423
v1
|
|
Effects of landscape features and demographic history on the genetic structure of Testudo marginata populations in the southern Peloponnese and Sardinia
Mélanie Perez
,
Raphaël Leblois
,
Barbara Livoreil
,
Roger Bour
,
Josie Lambourdière
et al.
Article dans une revue
hal-02931006
v1
|
|
The Impact of Human Conflict on the Genetics of Mastomys natalensis and Lassa Virus in West Africa
Aude Lalis
,
Raphaël Leblois
,
Emilie Lecompte
,
Christiane Denys
,
Jan ter Meulen
et al.
Article dans une revue
hal-02931012
v1
|
|
Coalescent-based DNA barcoding: multilocus analysis and robustness
Olivier David
,
Catherine Larédo
,
Raphael Leblois
,
Brigitte Schaeffer
,
Nicolas Vergne
Article dans une revue
hal-02337205
v1
|
|
Likelihood-Based Inferences under Isolation by Distance: Two-Dimensional Habitats and Confidence Intervals
François Rousset
,
Raphaël Leblois
Article dans une revue
hal-02651553
v1
|
|
Coalescent-Based DNA Barcoding: Multilocus Analysis and Robustness
Olivier David
,
Catherine Laredo
,
Raphaël Leblois
,
Brigitte Schaeffer
,
Nicolas Vergne
Journal of Computational Biology, 2012, 19 (3), pp.271-278
Article dans une revue
hal-02642847
v1
|
|
Guns, germs and dogs: On the origin of Leishmania chagasi
Raphaël Leblois
,
Katrin Kuhls
,
Olivier François
,
Gabriele Schönian
,
Thierry Wirth
Article dans une revue
istex
hal-02931001
v1
|
|
Inferring population decline and expansion from microsatellite data: A simulation-based evaluation of the Msvar method
Christophe Girod
,
Renaud Vitalis
,
Raphaël Leblois
,
Hélène Fréville
Article dans une revue
hal-02643411
v1
|
|
Genetic diversity, structure, gene flow and evolutionary relationships within the Sorghum bicolor wild-weedy-crop complex in a western African region
Fabrice Sagnard
,
Monique Deu
,
Dékoro Dembélé
,
Raphaël Leblois
,
Lassana Touré
et al.
Article dans une revue
hal-02649865
v1
|
|
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.
Giovanna Morelli
,
Yajun Song
,
Camila J Mazzoni
,
Mark Eppinger
,
Philippe Roumagnac
et al.
Article dans une revue
pasteur-00836130
v1
|
|
A Timescale for Evolution, Population Expansion, and Spatial Spread of an Emerging Clone of Methicillin-Resistant Staphylococcus aureus
Ulrich Nübel
,
Janina Dordel
,
Kevin Kurt
,
Birgit Strommenger
,
Henrik Westh
et al.
Article dans une revue
hal-02944185
v1
|
|
Limited dispersal in mobile hunter-gatherer Baka Pygmies.
Paul Verdu
,
Raphaël Leblois
,
Alain Froment
,
Sylvain Théry
,
Serge Bahuchet
et al.
Article dans une revue
hal-00504086
v1
|
|
Genetic structure of the xerophilous bromeliad Pitcairnia geyskesii on inselbergs in French Guiana - a test of the forest refuge hypothesis
Marie-Catherine Boisselier-Dubayle
,
Raphaël Leblois
,
Sarah Samadi
,
Josie Lambourdière
,
Corinne Sarthou
Article dans une revue
istex
hal-02930847
v1
|
|
Habitat continuity and geographic distance predict population genetic differentiation in giant kelp
Filipe Alberto
,
Peter Raimondi
,
Daniel Reed
,
Nelson Coelho
,
Raphaël Leblois
et al.
Article dans une revue
hal-02930859
v1
|
|
Statistical methods in spatial genetics
Gilles Guillot
,
Raphaël Leblois
,
Aurélie Coulon
,
Alain Frantz
Article dans une revue
hal-02930291
v1
|
|
DNA barcode analysis: a comparison of phylogenetic and statistical classification methods.
Frédéric Austerlitz
,
Olivier David
,
Brigitte Schaeffer
,
Kevin Bleakley
,
Madalina Olteanu
et al.
Article dans une revue
inserm-00663565
v1
|
|
IBDSim: a computer program to simulate genotypic data under isolation by distance
Raphaël Leblois
,
Arnaud Estoup
,
Francois Rousset
Article dans une revue
istex
halsde-00359920
v1
|
|
Compatible genetic and ecological estimates of dispersal rates in insect (Coenagrion mercuriale: Odonata: Zygoptera) populations: analysis of 'neighbourhood size' using a more precise estimator
Phillip, C. Watts
,
Francois Rousset
,
Ilik, J. Saccheri
,
Raphaël Leblois
,
Stephen, J. Kemp
et al.
Article dans une revue
halsde-00321661
v1
|
|
Four years of DNA barcoding: current advances and prospects.
Lise Frézal
,
Raphael Leblois
Article dans une revue
mnhn-00392451
v1
|
|
Likelihood and Approximate Likelihood Analyses of Genetic Structure in a Linear Habitat: Performance and Robustness to Model Mis-Specification
Francois Rousset
,
Raphaël Leblois
Article dans une revue
halsde-00321541
v1
|
|
Estimating the number of founder lineages from haplotypes of closely linked SNPs
Raphaël Leblois
,
Montgomery Slatkin
Article dans une revue
istex
hal-02929790
v1
|
|
Genetics of recent habitat contraction and reduction in population size: does isolation by distance matter?
Raphaël Leblois
,
Arnaud Estoup
,
Rejane R. Streiff
Article dans une revue
istex
hal-02663496
v1
|
|
Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models
M. de Iorio
,
R. Griffiths
,
Raphaël Leblois
,
Francois Rousset
Article dans une revue
istex
halsde-00325236
v1
|
|
Influence of Spatial and Temporal Heterogeneities on the Estimation of Demographic Parameters in a Continuous Population Using Individual Microsatellite Data
Raphaël Leblois
,
Francois Rousset
,
Arnaud Estoup
Article dans une revue
halsde-00326841
v1
|
|
Fine‐scale genetic structure of two carabid species with contrasted levels of habitat specialization
Carine Brouat
,
Florent Sennedot
,
Philippe Audiot
,
Raphaël Leblois
,
Jean-Yves Rasplus
Article dans une revue
istex
hal-02929781
v1
|
|
Influence of Mutational and Sampling Factors on the Estimation of Demographic Parameters in a "Continuous" Population Under Isolation by Distance
Raphaël Leblois
,
Arnaud Estoup
,
Francois Rousset
Article dans une revue
halsde-00333631
v1
|
|
Absence of evidence for isolation by distance in an expanding cane toad ( Bufo marinus ) population: an individual-based analysis of microsatellite genotypes
Raphaël Leblois
,
François Rousset
,
Dani Tikel
,
Craig Moritz
,
Arnaud Estoup
Article dans une revue
istex
hal-02929761
v1
|
|
Polymerase chain reaction primers for polymorphic microsatellite loci in the invasive toad species Bufo marinus
D. Tikel
,
D. Paetkau
,
M. Cortinas
,
Raphaël Leblois
,
Craig Moritz
et al.
Article dans une revue
istex
hal-02929768
v1
|