Rémi Allio

23
Documents

Publications

Publications

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New species of Endaeus Schoenherr, 1826 (Curculionidae: Curculioninae: Ochyromerini) associated with Annonaceae and Clusiaceae

Julien Haran , Benjamin Zelvelder , Clay Archange Boupoya , Thomas L.P. Couvreur , Raoul Niangadouma et al.

European Journal of Taxonomy, 2026, 1039, pp.165-198. ⟨10.5852/ejt.2026.1039.3185⟩

Article dans une revue hal-05514187v1
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Pseudogenes Document Protracted Parallel Regression of Oral Anatomy in Myrmecophagous Mammals

Christopher A. Emerling , Sophie Teullet , Rémi Allio , John Gatesy , Mark S. Springer et al.

Molecular Biology and Evolution, In press, pp.msag009. ⟨10.1093/molbev/msag009⟩

Article dans une revue hal-05368790v2
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One mother for two species via obligate cross-species cloning in ants

Y. Juvé , C. Lutrat , A. Ha , A. Weyna , E. Lauroua et al.

Nature, 2025, 646 (8084), pp.372-377. ⟨10.1038/s41586-025-09425-w⟩

Article dans une revue hal-05252088v2
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Haploblocks contribute to parallel climate adaptation following global invasion of a cosmopolitan plant

Paul Battlay , Brandon T. Hendrickson , Jonas I. Mendez-Reneau , James G. Santangelo , Lucas J. Albano et al.

Nature Ecology & Evolution, 2025, 9, pp.1441-1455. ⟨10.1038/s41559-025-02751-2⟩

Article dans une revue hal-05204320v1
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Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America

Charles Perrier , Rémi Allio , Fabrice Legeai , Mathieu Gautier , Frédéric Bénéluz et al.

Journal of Heredity, 2025, 116 (3), pp.344-353. ⟨10.1093/jhered/esae069⟩

Article dans une revue hal-04792049v3
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Transcriptomic data reveal divergent paths of chitinase evolution underlying dietary convergence in anteaters and pangolins

Rémi Allio , Sophie Teullet , Dave Lutgen , Amandine Magdeleine , Rachid Koual et al.

Genome Biology and Evolution, 2025, 17 (2), pp.evaf002. ⟨10.1093/gbe/evaf002⟩

Article dans une revue hal-04890530v2
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OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics

Rémi Allio , Frédéric Delsuc , Khalid Belkhir , Emmanuel J P Douzery , Vincent Ranwez et al.

Nucleic Acids Research, 2024, 52 (D1), pp.D529-D535. ⟨10.1093/nar/gkad834⟩

Article dans une revue hal-04266876v2
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A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae)

Fabien L. Condamine , Rémi Allio , Eliette L. Reboud , Julian R. Dupuis , Emmanuel F.A. Toussaint et al.

Molecular Phylogenetics and Evolution, 2023, 183, pp.107758. ⟨10.1016/j.ympev.2023.107758⟩

Article dans une revue hal-04031194v1
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Pangolin genomes offer key insights and resources for the world’s most trafficked wild mammals

Sean Heighton , Rémi Allio , Jérôme Murienne , Jordi Salmona , Hao Meng et al.

Molecular Biology and Evolution, 2023, 40 (10), pp.msad190. ⟨10.1093/molbev/msad190⟩

Article dans une revue hal-04251934v1
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Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of broodsite pollination mutualism in true weevils

J. Haran , X. Li , Rémi Allio , S. Shin , Laure Benoit et al.

Proceedings of the Royal Society B: Biological Sciences, 2023, 290 (2008), pp.20230889. ⟨10.1098/rspb.2023.0889⟩

Article dans une revue (article de synthèse) hal-04237796v1
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Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity

Mario Coiro , Rémi Allio , Nathan Mazet , Leyla J. Seyfullah , Fabien L Condamine

New Phytologist, 2023, 240 (4), pp.1616-1635. ⟨10.1111/nph.19010⟩

Article dans une revue hal-04144335v1
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PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets

Aurore Comte , Théo Tricou , Eric Tannier , Julien Joseph , Aurélie Siberchicot et al.

Molecular Biology and Evolution, 2023, 40 (11), pp.msad234. ⟨10.1093/molbev/msad234⟩

Article dans une revue hal-03995366v3
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Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants

Rémi Allio , Benoit Nabholz , Stefan Wanke , Guillaume Chomicki , Oscar A. Pérez-Escobar et al.

Nature Communications, 2021, 12, pp.354. ⟨10.1038/s41467-020-20507-3⟩

Article dans une revue hal-03143738v1
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High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox

Rémi Allio , Marie-Ka Tilak , Celine Scornavacca , Nico L Avenant , Andrew C Kitchener et al.

eLife, 2021, 10, ⟨10.7554/eLife.63167⟩

Article dans une revue hal-03147106v1
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Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution

Rémi Allio , Celine Scornavacca , Benoit Nabholz , Anne-Laure Clamens , Felix A. H. Sperling et al.

Systematic Biology, 2020, 69 (1), pp.38-60. ⟨10.1093/sysbio/syz030⟩

Article dans une revue hal-02125214v1
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MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics

Rémi Allio , Alex Schomaker‐bastos , Jonathan Romiguier , Francisco Prosdocimi , Benoit Nabholz et al.

Molecular Ecology Resources, 2020, 20, pp.892-905. ⟨10.1111/1755-0998.13160⟩

Article dans une revue hal-02869919v1

From antagonists to mutualists: the emergence of brood-site pollination in Ochyromerini weevils revealed by a new weevil specific UCE probe set

B Zelvelder , J Haran , Laure Benoit , A Loiseau , G Kergoat et al.

Congress of the European Society for Evolutionary Biology (ESEB 2025), Aug 2025, Barcelona, Spain. , pp.P01.212

Poster de conférence hal-05226231v1

A comprehensive phylogenomic view of the living xenarthran radiation

M Barthe , Rémi Allio , N Moraes-Barros , C Emerling , M Tilak et al.

Congress of the European Society for Evolutionary Biology (ESEB 2025), Sociedad Española de Biología Evolutiva, Aug 2025, Barcelona, Spain

Communication dans un congrès hal-05227541v1

Parallel gene losses underly convergent evolution of the oral apparatus in ant-eating mammals

C Emerling , S Teullet , Rémi Allio , J Gatesy , M Springer et al.

Congress of the European Society for Evolutionary Biology (ESEB 2025), Sociedad Española de Biología Evolutiva, Aug 2025, Barcelona, Spain

Communication dans un congrès hal-05227678v1

A macroevolutionary and genomic approach to studying insect-plant interactions

Fabien L. Condamine , R. Allio , Benoit Nabholz , Anne Laure Clamens , Stephan Wanke et al.

Séminaires scientifiques du Muséum d’Histoire Naturelle de Genève, May 2019, Genève, Switzerland

Communication dans un congrès hal-02786160v1

A macroevolutionary and genomic approach to studying insect-plant interactions

Fabien L. Condamine , R. Allio , Benoit Nabholz , Anne Laure Clamens , Stefan Wanke et al.

University of Alberta – Biology department seminar, Apr 2018, Edmonton, Canada

Communication dans un congrès hal-02786096v1