Rémi Allio

13

Documents

Publications

	OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics Rémi Allio , Frédéric Delsuc , Khalid Belkhir , Emmanuel J P Douzery , Vincent Ranwez Nucleic Acids Research, 2024, 52 (D1), pp.D529-D535. ⟨10.1093/nar/gkad834⟩ Journal articles hal-04266876v2
	Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of broodsite pollination mutualism in true weevils J. Haran , X. Li , Rémi Allio , S. Shin , L. Benoit Proceedings of the Royal Society B: Biological Sciences, 2023, 290 (2008), pp.20230889. ⟨10.1098/rspb.2023.0889⟩ Journal articles hal-04237796v1
	Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity Mario Coiro , Rémi Allio , Nathan Mazet , Leyla J. Seyfullah , Fabien L Condamine New Phytologist, 2023, 240 (4), pp.1616-1635. ⟨10.1111/nph.19010⟩ Journal articles hal-04144335v1
	PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets Aurore Comte , Théo Tricou , Eric Tannier , Julien Joseph , Aurélie Siberchicot Molecular Biology and Evolution, 2023, 40 (11), pp.msad234. ⟨10.1093/molbev/msad234⟩ Journal articles hal-03995366v3
	A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae) Fabien L. Condamine , Rémi Allio , Eliette L. Reboud , Julian R. Dupuis , Emmanuel F.A. Toussaint Molecular Phylogenetics and Evolution, 2023, 183, pp.107758. ⟨10.1016/j.ympev.2023.107758⟩ Journal articles hal-04031194v1
	Pangolin genomes offer key insights and resources for the world’s most trafficked wild mammals Sean Heighton , Rémi Allio , Jérôme Murienne , Jordi Salmona , Hao Meng Molecular Biology and Evolution, 2023, 40 (10), pp.msad190. ⟨10.1093/molbev/msad190⟩ Journal articles hal-04251934v1
	High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox Rémi Allio , Marie-Ka Tilak , Celine Scornavacca , Nico L Avenant , Andrew C Kitchener eLife, 2021, 10, ⟨10.7554/eLife.63167⟩ Journal articles hal-03147106v1
	Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants Rémi Allio , Benoit Nabholz , Stefan Wanke , Guillaume Chomicki , Oscar A. Pérez-Escobar Nature Communications, 2021, 12, pp.354. ⟨10.1038/s41467-020-20507-3⟩ Journal articles hal-03143738v1
	Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution Rémi Allio , Celine Scornavacca , Benoit Nabholz , Anne-Laure Clamens , Felix A. H. Sperling Systematic Biology, 2020, 69 (1), pp.38-60. ⟨10.1093/sysbio/syz030⟩ Journal articles hal-02125214v1
	MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics Rémi Allio , Alex Schomaker‐bastos , Jonathan Romiguier , Francisco Prosdocimi , Benoit Nabholz Molecular Ecology Resources, 2020, 20, pp.892-905. ⟨10.1111/1755-0998.13160⟩ Journal articles hal-02869919v1

	A macroevolutionary and genomic approach to studying insect-plant interactions Fabien L. Condamine , R. Allio , Benoit Nabholz , Anne Laure Clamens , Stephan Wanke Séminaires scientifiques du Muséum d’Histoire Naturelle de Genève, May 2019, Genève, Switzerland Conference papers hal-02786160v1
	A macroevolutionary and genomic approach to studying insect-plant interactions Fabien L. Condamine , R. Allio , Benoit Nabholz , Anne Laure Clamens , Stefan Wanke University of Alberta – Biology department seminar, Apr 2018, Edmonton, Canada Conference papers hal-02786096v1

	Comparative transcriptomics reveals divergent paths of chitinase evolution underlying dietary convergence in ant-eating mammals Rémi Allio , Sophie Teullet , Dave Lutgen , Amandine Magdeleine , Rachid Koual 2023 Preprints, Working Papers, ... hal-04251886v1