Rémi Allio

Publications

Article dans une revue (16)

New species of Endaeus Schoenherr, 1826 (Curculionidae: Curculioninae: Ochyromerini) associated with Annonaceae and Clusiaceae Julien Haran,Benjamin Zelvelder,Clay Archange Boupoya,Thomas L.P. Couvreur,Raoul Niangadoumaet al. European Journal of Taxonomy, 2026, 1039, pp.165-198. ⟨10.5852/ejt.2026.1039.3185⟩ Article dans une revue hal-05514187v1
Pseudogenes Document Protracted Parallel Regression of Oral Anatomy in Myrmecophagous Mammals Christopher A. Emerling,Sophie Teullet,Rémi Allio,John Gatesy,Mark S. Springeret al. Molecular Biology and Evolution, 2026, 43 (2), pp.msag009. ⟨10.1093/molbev/msag009⟩ Article dans une revue hal-05368790v3
Haploblocks contribute to parallel climate adaptation following global invasion of a cosmopolitan plant Paul Battlay,Brandon T. Hendrickson,Jonas I. Mendez-Reneau,James G. Santangelo,Lucas J. Albanoet al. Nature Ecology & Evolution, 2025, 9, pp.1441-1455. ⟨10.1038/s41559-025-02751-2⟩ Article dans une revue hal-05204320v1
One mother for two species via obligate cross-species cloning in ants Y. Juvé,C. Lutrat,A. Ha,A. Weyna,E. Laurouaet al. Nature, 2025, 646 (8084), pp.372-377. ⟨10.1038/s41586-025-09425-w⟩ Article dans une revue hal-05252088v2
Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America Charles Perrier,Rémi Allio,Fabrice Legeai,Mathieu Gautier,Frédéric Bénéluzet al. Journal of Heredity, 2025, 116 (3), pp.344-353. ⟨10.1093/jhered/esae069⟩ Article dans une revue hal-04792049v3
Transcriptomic data reveal divergent paths of chitinase evolution underlying dietary convergence in anteaters and pangolins Rémi Allio,Sophie Teullet,Dave Lutgen,Amandine Magdeleine,Rachid Koualet al. Genome Biology and Evolution, 2025, 17 (2), pp.evaf002. ⟨10.1093/gbe/evaf002⟩ Article dans une revue hal-04890530v2
OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics Rémi Allio,Frédéric Delsuc,Khalid Belkhir,Emmanuel J P Douzery,Vincent Ranwezet al. Nucleic Acids Research, 2024, 52 (D1), pp.D529-D535. ⟨10.1093/nar/gkad834⟩ Article dans une revue hal-04266876v2
Pangolin genomes offer key insights and resources for the world’s most trafficked wild mammals Sean Heighton,Rémi Allio,Jérôme Murienne,Jordi Salmona,Hao Menget al. Molecular Biology and Evolution, 2023, 40 (10), pp.msad190. ⟨10.1093/molbev/msad190⟩ Article dans une revue hal-04251934v1
A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae) Fabien L. Condamine,Rémi Allio,Eliette L. Reboud,Julian R. Dupuis,Emmanuel F.A. Toussaintet al. Molecular Phylogenetics and Evolution, 2023, 183, pp.107758. ⟨10.1016/j.ympev.2023.107758⟩ Article dans une revue hal-04031194v1
Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity Mario Coiro,Rémi Allio,Nathan Mazet,Leyla J. Seyfullah,Fabien L Condamine New Phytologist, 2023, 240 (4), pp.1616-1635. ⟨10.1111/nph.19010⟩ Article dans une revue hal-04144335v1
Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of broodsite pollination mutualism in true weevils J. Haran,X. Li,Rémi Allio,S. Shin,Laure Benoitet al. Proceedings of the Royal Society B: Biological Sciences, 2023, 290 (2008), pp.20230889. ⟨10.1098/rspb.2023.0889⟩ Article dans une revue (article de synthèse) hal-04237796v1
PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets Aurore Comte,Théo Tricou,Eric Tannier,Julien Joseph,Aurélie Siberchicotet al. Molecular Biology and Evolution, 2023, 40 (11), pp.msad234. ⟨10.1093/molbev/msad234⟩ Article dans une revue hal-03995366v3
Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants Rémi Allio,Benoit Nabholz,Stefan Wanke,Guillaume Chomicki,Oscar A. Pérez-Escobaret al. Nature Communications, 2021, 12, pp.354. ⟨10.1038/s41467-020-20507-3⟩ Article dans une revue hal-03143738v1
High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox Rémi Allio,Marie-Ka Tilak,Celine Scornavacca,Nico L Avenant,Andrew C Kitcheneret al. eLife, 2021, 10, ⟨10.7554/eLife.63167⟩ Article dans une revue hal-03147106v1
Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution Rémi Allio,Celine Scornavacca,Benoit Nabholz,Anne-Laure Clamens,Felix A. H. Sperlinget al. Systematic Biology, 2020, 69 (1), pp.38-60. ⟨10.1093/sysbio/syz030⟩ Article dans une revue hal-02125214v1
MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics Rémi Allio,Alex Schomaker‐bastos,Jonathan Romiguier,Francisco Prosdocimi,Benoit Nabholzet al. Molecular Ecology Resources, 2020, 20, pp.892-905. ⟨10.1111/1755-0998.13160⟩ Article dans une revue hal-02869919v1

Communication dans un congrès (4)

Parallel gene losses underly convergent evolution of the oral apparatus in ant-eating mammals C Emerling,S Teullet,Rémi Allio,J Gatesy,M Springeret al. Congress of the European Society for Evolutionary Biology (ESEB 2025), Sociedad Española de Biología Evolutiva, Aug 2025, Barcelona, Spain Communication dans un congrès hal-05227678v1
A comprehensive phylogenomic view of the living xenarthran radiation M Barthe,Rémi Allio,N Moraes-Barros,C Emerling,M Tilaket al. Congress of the European Society for Evolutionary Biology (ESEB 2025), Sociedad Española de Biología Evolutiva, Aug 2025, Barcelona, Spain Communication dans un congrès hal-05227541v1
A macroevolutionary and genomic approach to studying insect-plant interactions Fabien L. Condamine,R. Allio,Benoit Nabholz,Anne Laure Clamens,Stephan Wankeet al. Séminaires scientifiques du Muséum d’Histoire Naturelle de Genève, May 2019, Genève, Switzerland Communication dans un congrès hal-02786160v1
A macroevolutionary and genomic approach to studying insect-plant interactions Fabien L. Condamine,R. Allio,Benoit Nabholz,Anne Laure Clamens,Stefan Wankeet al. University of Alberta – Biology department seminar, Apr 2018, Edmonton, Canada Communication dans un congrès hal-02786096v1

Poster de conférence (1)

From antagonists to mutualists: the emergence of brood-site pollination in Ochyromerini weevils revealed by a new weevil specific UCE probe set B Zelvelder,J Haran,Laure Benoit,A Loiseau,G Kergoatet al. Congress of the European Society for Evolutionary Biology (ESEB 2025), Aug 2025, Barcelona, Spain. , pp.P01.212 Poster de conférence hal-05226231v1

Pré-publication, Document de travail (1)

Comparative transcriptomics reveals divergent paths of chitinase evolution underlying dietary convergence in ant-eating mammals Rémi Allio,Sophie Teullet,Dave Lutgen,Amandine Magdeleine,Rachid Koualet al. 2023 Pré-publication, Document de travail hal-04251886v1

Thèse (1)

Phylogenomics and comparative genomics in ant-eating mammals Rémi Allio Agricultural sciences. Université Montpellier, 2021. English. ⟨NNT : 2021MONTG006⟩ Thèse tel-03343948v1