Renaud VITALIS

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Publications

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Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource

Joaquin C. B. Nunez , Marta Coronado-Zamora , Mathieu Gautier , Martin Kapun , Sonja Steindl et al.

Molecular Biology and Evolution, 2025, 42 (8), pp.msaf132. ⟨10.1101/2024.11.10.622744⟩

Article dans une revue hal-04779897v2
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Revisiting the historical scenario of a disease dissemination using genetic data and Approximate Bayesian Computation methodology: The case of Pseudocercospora fijiensis invasion in Africa

Aude Gilabert , A Rieux , S Robert , Renaud Vitalis , Marie-Françoise Zapater et al.

Ecology and Evolution, 2023, 13 (4), pp.e10013. ⟨10.1002/ece3.10013⟩

Article dans une revue hal-04119272v1
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ƒ‐statistics estimation and admixture graph construction with Pool‐Seq or allele count data using the R package poolfstat

Mathieu Gautier , Renaud Vitalis , Laurence Flori , Arnaud Estoup

Molecular Ecology Resources, 2022, 22 (4), pp.1394-1416. ⟨10.1111/1755-0998.13557⟩

Article dans une revue hal-03481066v1
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Gene copy number variations at the within-host population level modulate gene expression in a multipartite virus

Romain Gallet , Jérémy Di Mattia , Sébastien Ravel , Jean-Louis Zeddam , Renaud Vitalis et al.

Virus Evolution, 2022, 8 (2), pp.veac058. ⟨10.1093/ve/veac058⟩

Article dans une revue hal-03747742v1
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Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift

Laurène Gay , Julien Dhinaut , Margaux Jullien , Renaud Vitalis , Miguel Navascués et al.

Ecology and Evolution, 2022, 12 (1), pp.e8555. ⟨10.1002/ece3.8555⟩

Article dans une revue hal-02922123v1
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Power and limits of selection genome scans on temporal data from a selfing population

Miguel Navascués , Arnaud Becheler , Laurène Gay , Joëlle Ronfort , Karine Loridon et al.

Peer Community Journal, 2021, 1, pp.e37. ⟨10.24072/pcjournal.47⟩

Article dans une revue hal-02922124v1
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Extending Approximate Bayesian Computation with Supervised Machine Learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest

François‐david Collin , Ghislain Durif , Louis Raynal , Eric Lombaert , Mathieu Gautier et al.

Molecular Ecology Resources, 2021, 21 (8), pp.2598-2613. ⟨10.1111/1755-0998.13413⟩

Article dans une revue hal-03229207v1
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Inferring sex-specific demographic history from SNP data

Florian Clemente , Mathieu Gautier , Renaud Vitalis

PLoS Genetics, 2018, 14 (1), ⟨10.1371/journal.pgen.1007191⟩

Article dans une revue hal-02388049v1

Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races

Pierre Nouhaud , Mathieu Gautier , Anaïs Gouin , Julie Jaquiéry , Jean Peccoud et al.

Molecular Ecology, 2018, 27 (16), pp.3287 - 3300. ⟨10.1111/mec.14799⟩

Article dans une revue hal-01892027v1
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Preliminary insights into the genetics of bank vole tolerance to Puumala hantavirus in Sweden

Audrey Rohfritsch , Maxime Galan , Mathieu Gautier , Karim Gharbi , Gert Olsson et al.

Ecology and Evolution, 2018, 8 (22), pp.11273-11292. ⟨10.1002/ece3.4603⟩

Article dans une revue hal-02388043v1
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Deciphering the demographic history of allochronic differentiation in the pine processionary moth Thaumetopoea pityocampa

Raphaël Leblois , Mathieu Gautier , Audrey Rohfritsch , Julien Foucaud , Christian Burban et al.

Molecular Ecology, 2018, 27 (1), pp.264-278. ⟨10.1111/mec.14411⟩

Article dans une revue hal-02626319v1
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Measuring Genetic Differentiation from Pool-seq Data

Valentin Hivert , Raphael Leblois , Eric Petit , Mathieu Gautier , Renaud Vitalis

Genetics, 2018, 210 (1), pp.315-330. ⟨10.1534/genetics.118.300900⟩

Article dans une revue hal-01936905v1

Microevolution of bank voles (Myodes glareolus) at neutral and immune-related genes during multiannual dynamic cycles: consequences for Puumala hantavirus epidemiology.

Adelaïde Dubois , Maxime Galan , Jean-François Cosson , Bertrand Gauffre , Heikki Henttonen et al.

Infection, Genetics and Evolution, 2017, 49, pp.318-329. ⟨10.1016/j.meegid.2016.12.007⟩

Article dans une revue hal-01483534v1
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REHH 2.0: a reimplementation of the R package REHH to detect positive selection from haplotype structure

Mathieu Gautier , Alexander Klassmann , Renaud Vitalis

Molecular Ecology Resources, 2017, 17 (1), pp.78-90. ⟨10.1111/1755-0998.12634⟩

Article dans une revue hal-01607599v1
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Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

Léa Frachon , Cyril Libourel , Romain Villoutreix , Sébastien Carrere , Cédric Glorieux et al.

Nature Ecology & Evolution, 2017, 1, pp.1551-1561. ⟨10.1038/s41559-017-0297-1⟩

Article dans une revue hal-02622028v1

Large-scale phylogeographic study of the cosmopolitan aphid pest Brachycaudus helichrysi reveals host plant associated lineages that evolved in allopatry

Megan Popkin , Joséphine Piffaretti , Anne Laure Clamens , Ge-Xia Qiao , Jing Chen et al.

Biological Journal of the Linnean Society, 2017, 120 (1), pp.102 - 114

Article dans une revue hal-02623529v1

Subspecific taxonomy of the desert locust, <em>Schistocerca gregaria</em> (Orthoptera: Acrididae), based on molecular and morphological characters

Marie-Pierre Chapuis , Corinna S. Bazelet , Laurence Blondin , Antoine Foucart , Renaud Vitalis et al.

Systematic Entomology, 2016, 41 (3), pp.516 - 530. ⟨10.1111/syen.12171⟩

Article dans une revue istex hal-02636000v1

New set of microsatellite markers for the spotted-wing <em>Drosophila suzukii</em> (Diptera: Drosophilidae): a promising molecular tool for inferring the invasion history of this major insect pest

Anne Fraimout , Anne Loiseau , Donald K. Price , Anne Xuéreb , Jean-François Martin et al.

European Journal of Entomology, 2015, 112, pp.855-859

Article dans une revue hal-02631599v1

Detecting and Measuring Selection from Gene Frequency Data

Renaud Vitalis , Mathieu M. Gautier , Kevin J. Dawson , Mark A. Beaumont

Genetics, 2014, 196 (3), pp.799 - +. ⟨10.1534/genetics.113.152991⟩

Article dans une revue hal-02632620v1
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Maximum-Likelihood Inference of Population Size Contractions from Microsatellite Data

Raphaël Leblois , Pierre Pudlo , Néron Joseph , François Bertaux , Champak Reddy Beeravolu et al.

Molecular Biology and Evolution, 2014, 31 (10), pp.2805-2823. ⟨10.1093/molbev/msu212⟩

Article dans une revue hal-02087423v1

Detecting correlation between allele frequencies and environmental variables as a signature of selection. A fast computational approach for genome-wide studies

Gilles Guillot , Renaud Vitalis , Arnaud Le Rouzic , Mathieu M. Gautier

Spatial Statistics, 2014, 8, pp.145 - 155. ⟨10.1016/j.spasta.2013.08.001⟩

Article dans une revue istex hal-02634708v1
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Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia

Laure Ségurel , Frédéric Austerlitz , Bruno Toupance , Mathieu M. Gautier , Joanna L Kelley et al.

European Journal of Human Genetics, 2013, 21 (10), pp.1146-1151. ⟨10.1038/ejhg.2012.295⟩

Article dans une revue hal-02120826v1
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When history repeats itself: Exploring the genetic architecture of host-plant adaptation in two closely related lepidopteran species

Hermine Alexandre , Sergine Ponsard , Denis Bourguet , Renaud Vitalis , Philippe Audiot et al.

PLoS ONE, 2013, 8 (7), ⟨10.1371/journal.pone.0069211⟩

Article dans une revue hal-01190519v1
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The joint evolution of dispersal and dormancy in a metapopulation with local extinctions and kin competition

Renaud Vitalis , François Rousset , Yutaka Kobayashi , Isabelle Olivieri , Sylvain Gandon

Evolution - International Journal of Organic Evolution, 2013, 67 (6), pp.1676 - 1691. ⟨10.1111/evo.12069⟩

Article dans une revue hal-02388052v1
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Inferring Population Histories Using Genome-Wide Allele Frequency Data

Mathieu Gautier , Renaud Vitalis

Molecular Biology and Evolution, 2012, 30 (3), pp.654-668. ⟨10.1093/molbev/mss257⟩

Article dans une revue hal-00783026v1

Rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

Mathieu M. Gautier , Renaud Vitalis

Bioinformatics, 2012, 28 (2), pp.1176-1177. ⟨10.1093/bioinformatics/bts115⟩

Article dans une revue hal-02648143v1

Large-scale candidate gene scan reveals the role of chemoreceptor genes in host plant specialization and speciation in the pea aphid

Carole Smadja , Björn Canbäck , Renaud Vitalis , Mathieu Gautier , Julia Ferrari et al.

Evolution - International Journal of Organic Evolution, 2012, 66 (9), pp.2723 - 2738. ⟨10.1111/j.1558-5646.2012.01612.x⟩

Article dans une revue hal-02652662v1
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Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex.

Julie Jaquiéry , Solenn Stoeckel , P. Nouhaud , L. Mieuzet , F. Mahéo et al.

Molecular Ecology, 2012, 21 (21), pp.5251-64. ⟨10.1111/mec.12048⟩

Article dans une revue istex hal-00753439v1
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Inbreeding depression is purged in the invasive insect Harmonia axyridis

Benoit Facon , Ruth A. Hufbauer , Ashraf Tayeh , Anne Loiseau , Eric Lombaert et al.

Current Biology, 2011, 21 (5), pp.424-427. ⟨10.1016/j.cub.2011.01.068⟩

Article dans une revue hal-02644352v1
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Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus

Diego Ayala , Michael C. Fontaine , Anna Cohuet , Didier Fontenille , Renaud Vitalis et al.

Molecular Biology and Evolution, 2011, 28 (1), pp.745-758. ⟨10.1093/molbev/msq248⟩

Article dans une revue hal-02651247v1

Scanning the European corn borer (<em>Ostrinia</em> spp.) genome for adptive divergence between host-affiliated species

Afiwa Midamegbe , Renaud Vitalis , Thibaut Malausa , Emilie Delava , Sandrine Cros-Arteil et al.

Molecular Ecology, 2011, 20, pp.1414-1430. ⟨10.1111/j.1365-294X.2011.05035.x⟩

Article dans une revue istex hal-02644072v1

Low regional diversity of late cave bears mitochondiral DNA at the time of Chauvet Aurignacian paintings

Céline Bon , Veronique Berthonaud , Philippe Fosse , Bernard Gély , Frédéric Maksud et al.

Journal of Archaeological Science, 2011, 38, pp.1886-1895. ⟨10.1016/j.jas.2011.03.033⟩

Article dans une revue istex hal-02649315v1

Inferring population decline and expansion from microsatellite data: A simulation-based evaluation of the Msvar method

Christophe Girod , Renaud Vitalis , Raphaël Leblois , Hélène Fréville

Genetics, 2011, 188 (1), pp.165-179. ⟨10.1534/genetics.110.121764⟩

Article dans une revue hal-02643411v1
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Population differentiation of sessile oak at thealtitudinal front of migration in the French Pyrenees

F. Alberto , J. Niort , J. Derory , O. Lepais , Renaud Vitalis et al.

Molecular Ecology, 2010, 19 (13), pp.2626-2639. ⟨10.1111/j.1365-294X.2010.04631.x⟩

Article dans une revue istex hal-01207890v1

Quantifying male-biased dispersal among social groups in the collared peccary (Pecari tajacu) using analyses based on mtDNA variation.

J. D. Cooper , Renaud Vitalis , P. M. Waser , D. Gopurenko , E. C. Hellgren et al.

Heredity, 2010, 104 (1), pp.79-87. ⟨10.1038/hdy.2009.102⟩

Article dans une revue hal-00535516v1

In defense of model-based inference in phylogeography

M. Beaumont , R. Nielsen , Cédric Robert Robert , J. Hey , O. Gaggiotti et al.

Molecular Ecology, 2010, 19 (3), pp.436-446. ⟨10.1111/j.1365-294X.2009.04515.x⟩

Article dans une revue hal-00601928v1

Limited dispersal in mobile hunter-gatherer Baka Pygmies.

Paul Verdu , Raphaël Leblois , Alain Froment , Sylvain Théry , Serge Bahuchet et al.

Biology Letters, 2010, 6 (6), pp.858-861. ⟨10.1098/rsbl.2010.0192⟩

Article dans une revue hal-00504086v1

Evolution of flowering time in experimental wheat populations: a comprehensive approach to detect genetic signatures of natural selection.

Bénédicte Rhoné , Renaud Vitalis , Isabelle Goldringer , Isabelle Bonnin

Evolution - International Journal of Organic Evolution, 2010, 64 (7), pp.2110-25. ⟨10.1111/j.1558-5646.2010.00970.x⟩

Article dans une revue istex hal-00535515v1

In defence of model-based inference in phylogeography.

Mark A Beaumont , Rasmus Nielsen , Christian P. Robert , Jody Hey , Oscar Gaggiotti et al.

Molecular Ecology, 2010, 19 (3), epub ahead of print. ⟨10.1111/j.1365-294X.2009.04515.x⟩

Article dans une revue hal-00450030v1
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In the heartland of Eurasia: the multilocus genetic landscape of Central Asian populations

Evelyne Heyer , Begoña Martínez-Cruz , Renaud Vitalis , Laure Ségurel , Frédéric Austerlitz et al.

European Journal of Human Genetics, 2010, ⟨10.1038/ejhg.2010.153⟩

Article dans une revue hal-00574375v1

Frequency of the AGT Pro11Leu polymorphism in humans: Does diet matter?

Laure Ségurel , Sophie Lafosse , Evelyne Heyer , Renaud Vitalis

Annals of Human Genetics, 2010, 74 (1), pp.57-64. ⟨10.1111/j.1469-1809.2009.00549.x⟩

Article dans une revue hal-00450027v1

Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa.

Paul Verdu , Frédéric Austerlitz , Arnaud Estoup , Renaud Vitalis , Myriam Georges et al.

Current Biology, 2009, 19 (4), pp.312-8. ⟨10.1016/j.cub.2008.12.049⟩

Article dans une revue hal-00397221v1

Genomic pattern of adaptive divergence in Arabidopsis halleri, a model species for tolerance to heavy metal

Claire-Lise Meyer , Renaud Vitalis , Pierre Saumitou-Laprade , Vincent Castric

Molecular Ecology, 2009, 18, pp.2050-2062

Article dans une revue hal-00383559v1
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Sex-specific genetic structure and social organization in Central Asia: insights from a multi-locus study.

Laure Ségurel , Begoña Martínez-Cruz , Lluis Quintana-Murci , Patricia Balaresque , Myriam Georges et al.

PLoS Genetics, 2008, 4 (9), pp.e1000200. ⟨10.1371/journal.pgen.1000200⟩

Article dans une revue hal-00328137v1

The evolution of dispersal in a Levins type metapopulation model

Vincent a A Jansen , Renaud Vitalis

Evolution - International Journal of Organic Evolution, 2007, 61, pp.2386-2397

Article dans une revue hal-00273240v1

When genes go to sleep : the population genetics consequences of seed dormancy and monocarpic perenniality

Renaud Vitalis , S. Glemin , I. Olivieri

The American Naturalist, 2004, 163, pp.295-311

Article dans une revue hal-00273249v1

When genes go to sleep: The population genetic consequences of seed dormancy and monocarpic perenniality

Renaud Vitalis , Sylvain Glémin , Isabelle Olivieri

The American Naturalist, 2004, 163 (2), pp.295-311. ⟨10.1086/381041⟩

Article dans une revue halsde-00326231v1

Detsel 1.0 : a computer program to detect markers responding to selection

Renaud Vitalis , K. Dawson , P. Boursot , K. Belkhir

Journal of Heredity, 2003, 94, pp.429-431

Article dans une revue hal-00273253v1

Multilocus genetic structure at contrasted spatial scales of the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)1

Renaud Vitalis , Miquel Riba , Bruno Colas , Patrick Grillas , Isabelle Olivieri

American Journal of Botany, 2002, 89 (7), pp.1142-1155. ⟨10.3732/ajb.89.7.1142⟩

Article dans une revue halsde-00334807v1

Multi-locus genetic structure at contrasted spatial scales in the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)

Renaud Vitalis , M. Riba , B. Colas , P. Grillas , I. Olivieri

American Journal of Botany, 2002, 89, pp.1142-1155

Article dans une revue hal-00273258v1

Sex-specific genetic differentiation and coalescence times : estimating sex-biased dispersal rates

Renaud Vitalis

Molecular Ecology Notes, 2002, 11, pp.125-138

Article dans une revue hal-00273257v1

Sex-specific genetic differentiation and coalescence times: estimating sex-biased dispersal rates

Renaud Vitalis

Molecular Ecology, 2002, 11 (1), pp.125 - 138. ⟨10.1046/j.0962-1083.2001.01414.x⟩

Article dans une revue istex halsde-00341007v1

Estimation of effective population size and migration rate from one- and two-locus identity measures.

Renaud Vitalis , D. Couvet

Genetics, 2001, 157 (2), pp.911-25

Article dans une revue hal-00535518v1

estim 1.0: a computer program to infer population parameters from one- and two-locus gene identity probabilities

Renaud Vitalis , Denis Couvet

Molecular Ecology Notes, 2001, 1 (4), pp.354 - 356. ⟨10.1046/j.1471-8278.2001.00086.x⟩

Article dans une revue istex halsde-00341848v1

Estimation of Effective Population Size and Migration Rate From One- and Two-Locus Identity Measures

Renaud Vitalis , Denis Couvet

Genetics, 2001, 157 (2), pp.911-925. ⟨10.1093/genetics/157.2.911⟩

Article dans une revue halsde-00342380v1

La Biologie des Extinctions

Isabelle Olivieri , Renaud Vitalis

Médecine/Sciences, 2001, 17 (1), pp.63-69. ⟨10.4267/10608/1788⟩

Article dans une revue halsde-00345442v1

Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population.

Renaud Vitalis , D. Couvet

Genetical Research, 2001, 77 (1), pp.67-81

Article dans une revue hal-00535519v1
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Interpretation of Variation Across Marker Loci as Evidence of Selection

Renaud Vitalis , Kevin Dawson , Pierre Boursot

Genetics, 2001, 158 (4), pp.1811-1823. ⟨10.1093/genetics/158.4.1811⟩

Article dans une revue halsde-00342552v1

Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population

Renaud Vitalis , Denis Couvet

Genetics Research, 2001, 77 (1), pp.67-81. ⟨10.1017/S0016672300004833⟩

Article dans une revue halsde-00341816v1
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Characterization of microsatellite loci in the endangered species of fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)

Renaud Vitalis , Marie-Pierre Dubois , Isabelle Olivieri

Molecular Ecology Notes, 2001, 1 (1/2), pp.64-66. ⟨10.1046/j.1471-8278.2001.00026.x⟩

Article dans une revue istex halsde-00335014v1

Interpretation of variation across marker loci as evidence of selection

Renaud Vitalis , K. Dawson , P. Boursot

Genetics, 2001, 158, pp.1811-1823

Article dans une revue hal-00273259v1

Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population

Renaud Vitalis , D. Couvet

Genetical Research, 2001, 77, pp.67-81

Article dans une revue hal-00273266v1

Isolation and characterization of microsatellites in the endemic species Centaurea corymbosa Pourret (Asteraceae) and other related species

H. Freville , E. Imbert , F. Justy , Renaud Vitalis , I. Olivieri

Molecular Ecology, 2000, 9, pp.1671-1672

Article dans une revue hal-00273268v1

Isolation and characterization of microsatellites in the endemic species Centaurea corymbosa Pourret (Asteraceae) and other related species

Hélène Fréville , Eric Imbert , Fabienne Justy , Renaud Vitalis , Isabelle Olivieri

Molecular Ecology, 2000, 9 (10), pp.1671 - 1672. ⟨10.1046/j.1365-294x.2000.01045-7.x⟩

Article dans une revue istex halsde-00335189v1
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Système génétique, polymorphisme neutre et sélectionné : implications en biologie de la conservation

Bernard Godelle , Frédéric Austerlitz , Stéphanie Brachet , Bruno Colas , Joël Cuguen et al.

Genetics Selection Evolution, 1998, 30 (1), pp.S15-S28. ⟨10.1186/1297-9686-30-S1-S15⟩

Article dans une revue hal-00894230v1

Marsilea strigosa Willd. : statut génétique et démographique d’une espèce menacée

Renaud Vitalis , Bruno Colas , Miquel Riba Rovira , Isabelle Olivieri

Ecologia mediterranea, 1998, 24 (2), pp.145-157. ⟨10.3406/ecmed.1998.1858⟩

Article dans une revue hal-03496614v1
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Système génétique, polymorphisme neutre et sélectionné: implications en biologie de la conservation

B. Godelle , Frédéric Austerlitz , Solène Brachet , B. Colas , Joël Cuguen et al.

Genetics Selection Evolution, 1998, 30 (suppl. 1), pp.S15-S28

Article dans une revue hal-02698599v1
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Système génétique, polymorphisme neutre et sélectionné : implications en biologie de la conservation

B. Godelle , F. Austerlitz , S. Brachet , B. Colas , J. Cuguen et al.

Genetics Selection Evolution, 1998, 30 (Supl 1), pp.S15-S28. ⟨10.1186/1297-9686-30-S1-S15⟩

Article dans une revue hal-00273269v1

Relationships between transposable elements based upon their integrase-transposase domains : is there a common ancestor ?

P. Capy , Renaud Vitalis , T. Langin , D. Higuet , C. Bazin

Journal of Molecular Evolution, 1996, 3, pp.359-368

Article dans une revue hal-00273270v1

Gene copy number variation impacts on gene expression in a multipartite virus

Stéphane Blanc , Romain Gallet , Jérémy Di Mattia , Sébastien Ravel , Renaud Vitalis et al.

10. Workshop in Virus Evolution, Mar 2019, Pennsylvania, United States

Communication dans un congrès hal-02786127v1
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Inferring sex-specific demographic history from SNP data

Florian Clemente , Mathieu Gautier , Renaud Vitalis

2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. 18 p

Communication dans un congrès hal-02785552v1

How to characterize local adaptation from genome-wide polymorphisms?

Renaud Vitalis

DrosEU/ESEB STN Summer School on Adaptation Genomics, Aug 2018, Montpellier, France

Communication dans un congrès hal-02785179v1

How to characterize local adaptation from genome-wide polymorphisms?

Renaud Vitalis

Journée thématique : Inférence de processus évolutifs à partir de données génomiques, théorie et pratique, Groupement de Recherche Génomique Environnementale (GDR3692). FRA. Approche Interdisciplinaire de l'Evolution Moléculaire (AIEM), FRA., May 2018, Paris, France

Communication dans un congrès hal-02785203v1

Estimation of the sex-ratio in population trees from allele frequency data

Florian Clemente , Mathieu Gautier , Renaud Vitalis

Mathematical and Computational Evolutionary Biology (MCEB 2017), Jun 2017, Porquerolles, France

Communication dans un congrès hal-02786395v1

A new method to detect and measure selection from genome-wide SNP data

Renaud Vitalis

Journées modèle aléatoire pour l'écologie et l'évolution, Jan 2016, Montpellier, France

Communication dans un congrès hal-02795635v1

Inferring sex-specific population histories using genome-wide gene frequency data

Florian Clemente , Mathieu Gautier , Renaud Vitalis

Conférence Jacques Monod "Coalescence des approches théoriques et expérimentales en génomique évolutive et biologie des systèmes", Oct 2016, Roscoff, France

Communication dans un congrès hal-02795877v1

Assessing the risks of Puumala virus emergence from immunogenomics of its reservoir, the bank vole <em>Myodes glareolus</em>, and its links with environmental variations

Audrey Rohfritsch , Maxime Galan , Emmanuel Guivier , Julie Pisano , Renaud Vitalis et al.

Genes, Ecosystems and Risk of Infection (GERI 2015) Conference, Apr 2015, Heraklion, Greece

Communication dans un congrès hal-02794261v1

Assessing the risks of Puumala virus emergence from immunogenomics of its reservoir, the bank vole <em>Myodes glareolus</em>, and its links with environmental variations

Audrey Rohfritsch , Maxime Galan , Emmanuel Guivier , Julie Pisano , Renaud Vitalis et al.

3ème Colloque de Génomique environnementale, Institut National de Recherche Agronomique (INRA). UMR Centre de Biologie pour la Gestion des Populations (1062)., Oct 2015, Montpellier, France

Communication dans un congrès hal-02794262v1

Limites des genome-scans pour la détection de locus sous sélection chez les espèces autogames

Arnaud Becheler , Renaud Vitalis , Miguel Navascués

Journées ARCAD, Oct 2014, Montpellier, France

Communication dans un congrès hal-02794123v1

Inferring trees of population divergence with Kim_tree

Mathieu M. Gautier , Renaud Vitalis

Research Summer School 2013 "Software and Statistical Methods for Population Genetics (SSMPG 2013), Jun 2013, Aussois, France

Communication dans un congrès hal-02807574v1

SelEstim : a new method to detect and measure selection from genome-wide SNP data

Renaud Vitalis

Research Summer School 2013 "Software and Statistical Methods for Population Genetics (SSMPG 2013), Jun 2013, Aussois, France

Communication dans un congrès hal-02808248v1

Flowering time trait, gene and microsatellite differentiation among experimental populations of wheat

Bénédicte Rhoné , Isabelle Goldringer , Renaud Vitalis , Carine Remoue , Nathalie Galic et al.

11. International congress of european society for evolutionary biology, Aug 2007, Uppsala, Sweden

Communication dans un congrès hal-02819999v1
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Système génétique, polymorphisme neutre et sélectionné: implications en biologie de la conservation

B. Godelle , Frédéric Austerlitz , Solène Brachet , B. Colas , Joël Cuguen et al.

Colloque BRG/USTL. Méthodologies de gestion et de conservation des ressources génétiques, Oct 1997, Lille, France

Communication dans un congrès hal-02841136v1

Inferring sex-specific demographic history from SNP data

Florian Clemente , Mathieu Gautier , Renaud Vitalis

EMBO | EMBL Symposia: Reconstructing the Human Past - Using Ancient and Modern Genomics, Mar 2019, Heidelberg, Germany. , 2019

Poster de conférence hal-02787381v1
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Measuring genetic differentiation from pooled population samples

Valentin Hivert , Raphaël Leblois , Eric Petit , Mathieu Gautier , Renaud Vitalis

2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. 2018

Poster de conférence hal-02785674v1
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Temporal FST genome scans: the case of partially selfing populations

Miguel Navascués , Arnaud Becheler , Laurène Gay , Joelle Ronfort , Renaud Vitalis

Sex uncovered: the evolutionary biology of reproductive systems, Apr 2018, Roscoff, France. 1 p., 2018, ⟨10.6084/m9.figshare.13010312.v1⟩

Poster de conférence hal-02786307v1
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Temporal FST genome scans: the case of partially selfing populations

Miguel Navascués , Arnaud Becheler , Laurène Gay , Joelle Ronfort , Renaud Vitalis

2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. 2018

Poster de conférence hal-02786861v1

Tracking adaptation in selfing plant populations

Miguel Navascués , Arnaud Becheler , Margaux Jullien , Léa Frachon , Cyril Libourel et al.

Conférence Jacques Monod "Coalescence des approches théoriques et expérimentales en génomique évolutive et biologie des systèmes", Apr 2016, Roscoff, France. , 2016

Poster de conférence hal-02801759v1
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Tracking adaptation to environmental changes: selfing and detection of loci under selection

Arnaud Becheler , Renaud Vitalis , Miguel Navascués

15. Congress of the European Society for Evolutionary Biology (ESEB 2015), Aug 2015, Lausanne, Switzerland. , 2015, 15th Congress of the European Society for Evolutionary Biology: Abstracts

Poster de conférence hal-02740162v1

Detection of locus under selection from temporal samples of partial-selfing populations

Arnaud Becheler , Renaud Vitalis , Miguel Navascués

SMBE Satellite meeting SMBEBA 2015. Investigating biological adaptation with NGS: data and models, May 2015, Saint Martin de Londres, France. 2015

Poster de conférence hal-02797018v1

Is there a genetic paradox of biological invasion?

Arnaud Estoup , Virginie Ravigné , Ruth Hufbauer , Renaud Vitalis , Mathieu Gautier et al.

Annual Review of Ecology, Evolution and Systematics, 47, ANNUAL REVIEWS, pp.22, 2016, Annual Review of Ecology, Evolution, and Systematics, 978-0-8243-1447-7. ⟨10.1146/annurev-ecolsys-121415-032116⟩

Chapitre d'ouvrage hal-01608618v1

Génétique et évolution des populations et des métapopulations

I. Olivieri , Renaud Vitalis , P.H. Gouyon

Biologie Evolutive, 2ème ed., De Boeck Université, 1 000 p., 2016, 9782807302969

Chapitre d'ouvrage hal-02795178v1

DETSEL: An R-Package to Detect Marker Loci Responding to Selection

Renaud Vitalis

Data Production and Analysis in Population Genomics : Methods and Protocols, 888, Humana Press, 2012, Methods in Molecular Biology, 978-1-61779-869-6 978-1-61779-870-2. ⟨10.1007/978-1-61779-870-2_16⟩

Chapitre d'ouvrage hal-02807927v1
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Génétique des populations subdivisées : théorie et applications

Renaud Vitalis

Ecologie, Environnement. Université Montpellier II - Sciences et Techniques du Languedoc, 2001. Français. ⟨NNT : ⟩

Thèse tel-00535513v1
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Inférence en génétique et génomique des populations

Renaud Vitalis

Génétique des populations [q-bio.PE]. Université montpellier II, 2012

HDR tel-04188620v1