Renaud VITALIS

Documents

Publications

	Revisiting the historical scenario of a disease dissemination using genetic data and Approximate Bayesian Computation methodology: The case of Pseudocercospora fijiensis invasion in Africa Aude Gilabert , A Rieux , S Robert , Renaud Vitalis , M-F. Zapater Ecology and Evolution, 2023, 13 (4), pp.e10013. ⟨10.1002/ece3.10013⟩ Journal articles hal-04119272v1
	Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift Laurène Gay , Julien Dhinaut , Margaux Jullien , Renaud Vitalis , Miguel Navascués Ecology and Evolution, 2022, 12 (1), ⟨10.1002/ece3.8555⟩ Journal articles hal-02922123v1
	ƒ‐statistics estimation and admixture graph construction with Pool‐Seq or allele count data using the R package poolfstat Mathieu Gautier , Renaud Vitalis , Laurence Flori , Arnaud Estoup Molecular Ecology Resources, 2022, 22 (4), pp.1394-1416. ⟨10.1111/1755-0998.13557⟩ Journal articles hal-03481066v1
	Gene copy number variations at the within-host population level modulate gene expression in a multipartite virus Romain Gallet , Jérémy Di Mattia , Sébastien Ravel , Jean-Louis Zeddam , Renaud Vitalis Virus Evolution, 2022, 8 (2), pp.veac058. ⟨10.1093/ve/veac058⟩ Journal articles hal-03747742v1
	Extending Approximate Bayesian Computation with Supervised Machine Learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest François‐david Collin , Ghislain Durif , Louis Raynal , Eric Lombaert , Mathieu Gautier Molecular Ecology Resources, 2021, 21 (8), pp.2598-2613. ⟨10.1111/1755-0998.13413⟩ Journal articles hal-03229207v1
	Power and limits of selection genome scans on temporal data from a selfing population Miguel Navascués , Arnaud Becheler , Laurène Gay , Joëlle Ronfort , Karine Loridon Peer Community Journal, 2021, 1, 27 p. ⟨10.24072/pcjournal.47⟩ Journal articles hal-02922124v1
	Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time Léa Frachon , Cyril Libourel , Romain Villoutreix , Sébastien Carrere , Cédric Glorieux Nature Ecology & Evolution, 2018, 2, pp.194. ⟨10.1038/s41559-017-0405-2⟩ Journal articles hal-02622028v1
	Preliminary insights into the genetics of bank vole tolerance to Puumala hantavirus in Sweden Audrey Rohfritsch , Maxime Galan , Mathieu Gautier , Karim Gharbi , Gert Olsson Ecology and Evolution, 2018, 8 (22), pp.11273-11292. ⟨10.1002/ece3.4603⟩ Journal articles hal-02388043v1
	Measuring Genetic Differentiation from Pool-seq Data Valentin Hivert , Raphael Leblois , Eric Petit , Mathieu Gautier , Renaud Vitalis Genetics, 2018, 210 (1), pp.315-330. ⟨10.1534/genetics.118.300900⟩ Journal articles hal-01936905v1
	Inferring sex-specific demographic history from SNP data Florian Clemente , Mathieu Gautier , Renaud Vitalis PLoS Genetics, 2018, 14 (1), ⟨10.1371/journal.pgen.1007191⟩ Journal articles hal-02388049v1
	Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races Pierre Nouhaud , Mathieu Gautier , Anaïs Gouin , Julie Jaquiéry , Jean Peccoud Molecular Ecology, 2018, 27 (16), pp.3287 - 3300. ⟨10.1111/mec.14799⟩ Journal articles hal-01892027v1
	Deciphering the demographic history of allochronic differentiation in the pine processionary moth Thaumetopoea pityocampa Raphaël Leblois , Mathieu Gautier , Audrey Rohfritsch , Julien Foucaud , Christian Burban Molecular Ecology, 2018, 27 (1), pp.264-278. ⟨10.1111/mec.14411⟩ Journal articles hal-02626319v1
	Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time Léa Frachon , Cyril Libourel , Romain Villoutreix , Sébastien Carrere , Cédric Glorieux Nature Ecology & Evolution, 2017, 1 (10), pp.1551-1561. ⟨10.1038/s41559-017-0297-1⟩ Journal articles hal-01723277v1
	Large-scale phylogeographic study of the cosmopolitan aphid pest Brachycaudus helichrysi reveals host plant associated lineages that evolved in allopatry Megan Popkin , Joséphine Piffaretti , Anne Laure Clamens , Ge-Xia Qiao , Jing Chen Biological Journal of the Linnean Society, 2017, 120 (1), pp.102 - 114 Journal articles hal-02623529v1
	Microevolution of bank voles (Myodes glareolus) at neutral and immune-related genes during multiannual dynamic cycles: consequences for Puumala hantavirus epidemiology. Adelaïde Dubois , Maxime Galan , Jean-François Cosson , Bertrand Gauffre , Heikki Henttonen Infection, Genetics and Evolution, 2017, 49, pp.318-329. ⟨10.1016/j.meegid.2016.12.007⟩ Journal articles hal-01483534v1
	REHH 2.0: a reimplementation of the R package REHH to detect positive selection from haplotype structure Mathieu Gautier , Alexander Klassmann , Renaud Vitalis Molecular Ecology Resources, 2017, 17 (1), pp.78-90. ⟨10.1111/1755-0998.12634⟩ Journal articles hal-01607599v1
	Subspecific taxonomy of the desert locust, Schistocerca gregaria (Orthoptera: Acrididae), based on molecular and morphological characters Marie-Pierre Chapuis , Corinna S. Bazelet , Laurence Blondin , Antoine Foucart , Renaud Vitalis Systematic Entomology, 2016, 41 (3), pp.516 - 530. ⟨10.1111/syen.12171⟩ Journal articles hal-02636000v1
	New set of microsatellite markers for the spotted-wing Drosophila suzukii (Diptera: Drosophilidae): a promising molecular tool for inferring the invasion history of this major insect pest Anne Fraimout , Anne Loiseau , Donald K. Price , Anne Xuéreb , Jean-François Martin European Journal of Entomology, 2015, 112, pp.855-859 Journal articles hal-02631599v1
	Maximum-Likelihood Inference of Population Size Contractions from Microsatellite Data Raphaël Leblois , Pierre Pudlo , Néron Joseph , François Bertaux , Champak Reddy Beeravolu Molecular Biology and Evolution, 2014, 31 (10), pp.2805-2823. ⟨10.1093/molbev/msu212⟩ Journal articles hal-02087423v1
	Detecting correlation between allele frequencies and environmental variables as a signature of selection. A fast computational approach for genome-wide studies Gilles Guillot , Renaud Vitalis , Arnaud Le Rouzic , Mathieu M. Gautier Spatial Statistics, 2014, 8, pp.145 - 155. ⟨10.1016/j.spasta.2013.08.001⟩ Journal articles hal-02634708v1
	Detecting and Measuring Selection from Gene Frequency Data Renaud Vitalis , Mathieu M. Gautier , Kevin J. Dawson , Mark A. Beaumont Genetics, 2014, 196 (3), pp.799 - +. ⟨10.1534/genetics.113.152991⟩ Journal articles hal-02632620v1
	Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia Laure Ségurel , Frédéric Austerlitz , Bruno Toupance , Mathieu M. Gautier , Joanna L Kelley European Journal of Human Genetics, 2013, 21 (10), pp.1146-1151. ⟨10.1038/ejhg.2012.295⟩ Journal articles hal-02120826v1
	The joint evolution of dispersal and dormancy in a metapopulation with local extinctions and kin competition Renaud Vitalis , François Rousset , Yutaka Kobayashi , Isabelle Olivieri , Sylvain Gandon Evolution - International Journal of Organic Evolution, 2013, 67 (6), pp.1676 - 1691. ⟨10.1111/evo.12069⟩ Journal articles hal-02388052v1
	When history repeats itself: Exploring the genetic architecture of host-plant adaptation in two closely related lepidopteran species Hermine Alexandre , Sergine Ponsard , Denis Bourguet , Renaud Vitalis , Philippe Audiot PLoS ONE, 2013, 8 (7), ⟨10.1371/journal.pone.0069211⟩ Journal articles hal-01190519v1
	Inferring Population Histories Using Genome-Wide Allele Frequency Data Mathieu Gautier , Renaud Vitalis Molecular Biology and Evolution, 2012, 30 (3), pp.654-668. ⟨10.1093/molbev/mss257⟩ Journal articles hal-00783026v1
	Large-scale candidate gene scan reveals the role of chemoreceptor genes in host plant specialization and speciation in the pea aphid Carole Smadja , Björn Canbäck , Renaud Vitalis , Mathieu Gautier , Julia Ferrari Evolution - International Journal of Organic Evolution, 2012, 66 (9), pp.2723 - 2738. ⟨10.1111/j.1558-5646.2012.01612.x⟩ Journal articles hal-02652662v1
	Rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure Mathieu M. Gautier , Renaud Vitalis Bioinformatics, 2012, 28 (2), pp.1176-1177. ⟨10.1093/bioinformatics/bts115⟩ Journal articles hal-02648143v1
	Inbreeding depression is purged in the invasive insect Harmonia axyridis Benoit Facon , Ruth A. Hufbauer , Ashraf Tayeh , Anne Loiseau , Eric Lombaert Current Biology - CB, 2011, 21 (5), pp.424-427. ⟨10.1016/j.cub.2011.01.068⟩ Journal articles hal-02644352v1
	Low regional diversity of late cave bears mitochondiral DNA at the time of Chauvet Aurignacian paintings Céline Bon , Veronique Berthonaud , Philippe Fosse , Bernard Gély , Frédéric Maksud Journal of Archaeological Science, 2011, 38, pp.1886-1895. ⟨10.1016/j.jas.2011.03.033⟩ Journal articles hal-02649315v1
	Inferring population decline and expansion from microsatellite data: A simulation-based evaluation of the Msvar method Christophe Girod , Renaud Vitalis , Raphaël Leblois , Hélène Fréville Genetics, 2011, 188 (1), pp.165-179. ⟨10.1534/genetics.110.121764⟩ Journal articles hal-02643411v1
	Scanning the European corn borer (Ostrinia spp.) genome for adptive divergence between host-affiliated species Afiwa Midamegbe , Renaud Vitalis , Thibaut Malausa , Emilie Delava , Sandrine Cros-Arteil Molecular Ecology, 2011, 20, pp.1414-1430. ⟨10.1111/j.1365-294X.2011.05035.x⟩ Journal articles hal-02644072v1
	Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus Diego Ayala , Michael C. Fontaine , Anna Cohuet , Didier Fontenille , Renaud Vitalis Molecular Biology and Evolution, 2011, 28 (1), pp.745-758. ⟨10.1093/molbev/msq248⟩ Journal articles hal-02651247v1
	Population differentiation of sessile oak at thealtitudinal front of migration in the French Pyrenees F. Alberto , J. Niort , J. Derory , O. Lepais , Renaud Vitalis Molecular Ecology, 2010, 19 (13), pp.2626-2639. ⟨10.1111/j.1365-294X.2010.04631.x⟩ Journal articles hal-01207890v1
	Evolution of flowering time in experimental wheat populations: a comprehensive approach to detect genetic signatures of natural selection. Bénédicte Rhoné , Renaud Vitalis , Isabelle Goldringer , Isabelle Bonnin Evolution - International Journal of Organic Evolution, 2010, 64 (7), pp.2110-25. ⟨10.1111/j.1558-5646.2010.00970.x⟩ Journal articles hal-00535515v1
	Limited dispersal in mobile hunter-gatherer Baka Pygmies. Paul Verdu , Raphaël Leblois , Alain Froment , Sylvain Théry , Serge Bahuchet Biology Letters, 2010, 6 (6), pp.858-861. ⟨10.1098/rsbl.2010.0192⟩ Journal articles hal-00504086v1
	Frequency of the AGT Pro11Leu polymorphism in humans: Does diet matter? Laure Ségurel , Sophie Lafosse , Evelyne Heyer , Renaud Vitalis Annals of Human Genetics, 2010, 74 (1), pp.57-64. ⟨10.1111/j.1469-1809.2009.00549.x⟩ Journal articles hal-00450027v1
	Quantifying male-biased dispersal among social groups in the collared peccary (Pecari tajacu) using analyses based on mtDNA variation. J. D. Cooper , Renaud Vitalis , P. M. Waser , D. Gopurenko , E. C. Hellgren Heredity, 2010, 104 (1), pp.79-87. ⟨10.1038/hdy.2009.102⟩ Journal articles hal-00535516v1
	In defence of model-based inference in phylogeography. Mark A Beaumont , Rasmus Nielsen , Christian P. Robert , Jody Hey , Oscar Gaggiotti Molecular Ecology, 2010, 19 (3), epub ahead of print. ⟨10.1111/j.1365-294X.2009.04515.x⟩ Journal articles hal-00450030v1
	In the heartland of Eurasia: the multilocus genetic landscape of Central Asian populations Evelyne Heyer , Begoña Martínez-Cruz , Renaud Vitalis , Laure Ségurel , Frédéric Austerlitz European Journal of Human Genetics, 2010, ⟨10.1038/ejhg.2010.153⟩ Journal articles hal-00574375v1
	Genomic pattern of adaptive divergence in Arabidopsis halleri, a model species for tolerance to heavy metal Claire-Lise Meyer , Renaud Vitalis , Pierre Saumitou-Laprade , Vincent Castric Molecular Ecology, 2009, 18, pp.2050-2062 Journal articles hal-00383559v1
	Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa. Paul Verdu , Frédéric Austerlitz , Arnaud Estoup , Renaud Vitalis , Myriam Georges Current Biology - CB, 2009, 19 (4), pp.312-8. ⟨10.1016/j.cub.2008.12.049⟩ Journal articles hal-00397221v1
	Sex-specific genetic structure and social organization in Central Asia: insights from a multi-locus study. Laure Ségurel , Begoña Martínez-Cruz , Lluis Quintana-Murci , Patricia Balaresque , Myriam Georges PLoS Genetics, 2008, 4 (9), pp.e1000200. ⟨10.1371/journal.pgen.1000200⟩ Journal articles hal-00328137v1
	The evolution of dispersal in a Levins type metapopulation model Vincent a A Jansen , Renaud Vitalis Evolution - International Journal of Organic Evolution, 2007, 61, pp.2386-2397 Journal articles hal-00273240v1
	When genes go to sleep: The population genetic consequences of seed dormancy and monocarpic perenniality Renaud Vitalis , Sylvain Glémin , Isabelle Olivieri The American Naturalist, 2004, 163 (2), pp.295-311. ⟨10.1086/381041⟩ Journal articles halsde-00326231v1
	When genes go to sleep : the population genetics consequences of seed dormancy and monocarpic perenniality Renaud Vitalis , S. Glemin , I. Olivieri The American Naturalist, 2004, 163, pp.295-311 Journal articles hal-00273249v1
	Detsel 1.0 : a computer program to detect markers responding to selection Renaud Vitalis , K. Dawson , P. Boursot , K. Belkhir Journal of Heredity, 2003, 94, pp.429-431 Journal articles hal-00273253v1
	Multi-locus genetic structure at contrasted spatial scales in the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta) Renaud Vitalis , M. Riba , B. Colas , P. Grillas , I. Olivieri American Journal of Botany, 2002, 89, pp.1142-1155 Journal articles hal-00273258v1
	Sex-specific genetic differentiation and coalescence times : estimating sex-biased dispersal rates Renaud Vitalis Molecular Ecology Notes, 2002, 11, pp.125-138 Journal articles hal-00273257v1
	Sex-specific genetic differentiation and coalescence times: estimating sex-biased dispersal rates Renaud Vitalis Molecular Ecology, 2002, 11 (1), pp.125 - 138. ⟨10.1046/j.0962-1083.2001.01414.x⟩ Journal articles halsde-00341007v1
	Multilocus genetic structure at contrasted spatial scales of the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)1 Renaud Vitalis , Miquel Riba , Bruno Colas , Patrick Grillas , Isabelle Olivieri American Journal of Botany, 2002, 89 (7), pp.1142-1155. ⟨10.3732/ajb.89.7.1142⟩ Journal articles halsde-00334807v1
	Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population Renaud Vitalis , Denis Couvet Genetics Research, 2001, 77 (1), pp.67-81. ⟨10.1017/S0016672300004833⟩ Journal articles halsde-00341816v1
	Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population Renaud Vitalis , D. Couvet Genetical Research, 2001, 77, pp.67-81 Journal articles hal-00273266v1
	Interpretation of variation across marker loci as evidence of selection Renaud Vitalis , K. Dawson , P. Boursot Genetics, 2001, 158, pp.1811-1823 Journal articles hal-00273259v1
	La biologie des extinctions I. Olivieri , Renaud Vitalis Médecine/Sciences, 2001, 17, pp.63-69 Journal articles hal-00273260v1
	Characterization of microsatellite loci in the endangered species of fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta) Renaud Vitalis , M.-P. Dubois , I. Olivieri Molecular Ecology Notes, 2001, 1, pp.64-66 Journal articles hal-00273267v1
	Interpretation of Variation Across Marker Loci as Evidence of Selection Renaud Vitalis , Kevin Dawson , Pierre Boursot Genetics, 2001, 158 (4), pp.1811-1823. ⟨10.1093/genetics/158.4.1811⟩ Journal articles halsde-00342552v1
	Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population. Renaud Vitalis , D. Couvet Genetical Research, 2001, 77 (1), pp.67-81 Journal articles hal-00535519v1
	Characterization of microsatellite loci in the endangered species of fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta) Renaud Vitalis , M.-P. Dubois , Isabelle Olivieri Molecular Ecology Notes, 2001, 1 (1/2), pp.64 - 66. ⟨10.1046/j.1471-8278.2001.00026.x⟩ Journal articles halsde-00335014v1
	Estimation of effective population size and migration rate from one- and two-locus identity measures. Renaud Vitalis , D. Couvet Genetics, 2001, 157 (2), pp.911-25 Journal articles hal-00535518v1
	Estimation of Effective Population Size and Migration Rate From One- and Two-Locus Identity Measures Renaud Vitalis , Denis Couvet Genetics, 2001, 157 (2), pp.911-925. ⟨10.1093/genetics/157.2.911⟩ Journal articles halsde-00342380v1
	estim 1.0: a computer program to infer population parameters from one- and two-locus gene identity probabilities Renaud Vitalis , Denis Couvet Molecular Ecology Notes, 2001, 1 (4), pp.354 - 356. ⟨10.1046/j.1471-8278.2001.00086.x⟩ Journal articles halsde-00341848v1
	La Biologie des Extinctions Isabelle Olivieri , Renaud Vitalis Médecine/Sciences, 2001, 17 (1), pp.63-69. ⟨10.4267/10608/1788⟩ Journal articles halsde-00345442v1
	Isolation and characterization of microsatellites in the endemic species Centaurea corymbosa Pourret (Asteraceae) and other related species Hélène Fréville , Eric Imbert , Fabienne Justy , Renaud Vitalis , Isabelle Olivieri Molecular Ecology, 2000, 9 (10), pp.1671 - 1672. ⟨10.1046/j.1365-294x.2000.01045-7.x⟩ Journal articles halsde-00335189v1
	Isolation and characterization of microsatellites in the endemic species Centaurea corymbosa Pourret (Asteraceae) and other related species H. Freville , E. Imbert , F. Justy , Renaud Vitalis , I. Olivieri Molecular Ecology, 2000, 9, pp.1671-1672 Journal articles hal-00273268v1
	Système génétique, polymorphisme neutre et sélectionné : implications en biologie de la conservation B. Godelle , F. Austerlitz , S. Brachet , B. Colas , J. Cuguen Genetics Selection Evolution, 1998, 30 (Supl 1), pp.S15-S28. ⟨10.1186/1297-9686-30-S1-S15⟩ Journal articles hal-00273269v1
	Système génétique, polymorphisme neutre et sélectionné : implications en biologie de la conservation Bernard Godelle , Frédéric Austerlitz , Stéphanie Brachet , Bruno Colas , Joël Cuguen Genetics Selection Evolution, 1998, 30 (Suppl), pp.S15-S28 Journal articles hal-00894230v1
	Marsilea strigosa Willd. : statut génétique et démographique d’une espèce menacée Renaud Vitalis , Bruno Colas , Miquel Riba Rovira , Isabelle Olivieri Ecologia mediterranea, 1998, 24 (2), pp.145-157. ⟨10.3406/ecmed.1998.1858⟩ Journal articles hal-03496614v1
	Relationships between transposable elements based upon their integrase-transposase domains : is there a common ancestor ? P. Capy , Renaud Vitalis , T. Langin , D. Higuet , C. Bazin Journal of Molecular Evolution, 1996, 3, pp.359-368 Journal articles hal-00273270v1

	Gene copy number variation impacts on gene expression in a multipartite virus Stéphane Blanc , Romain Gallet , Jérémy Di Mattia , Sébastien Ravel , Renaud Vitalis 10. Workshop in Virus Evolution, Mar 2019, Pennsylvania, United States Conference papers hal-02786127v1
	Inferring sex-specific demographic history from SNP data Florian Clemente , Mathieu Gautier , Renaud Vitalis 2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. 18 p Conference papers hal-02785552v1
	How to characterize local adaptation from genome-wide polymorphisms? Renaud Vitalis DrosEU/ESEB STN Summer School on Adaptation Genomics, Aug 2018, Montpellier, France Conference papers hal-02785179v1
	How to characterize local adaptation from genome-wide polymorphisms? Renaud Vitalis Journée thématique : Inférence de processus évolutifs à partir de données génomiques, théorie et pratique, Groupement de Recherche Génomique Environnementale (GDR3692). FRA. Approche Interdisciplinaire de l'Evolution Moléculaire (AIEM), FRA., May 2018, Paris, France Conference papers hal-02785203v1
	Estimation of the sex-ratio in population trees from allele frequency data Florian Clemente , Mathieu Gautier , Renaud Vitalis Mathematical and Computational Evolutionary Biology (MCEB 2017), Jun 2017, Porquerolles, France Conference papers hal-02786395v1
	Inferring sex-specific population histories using genome-wide gene frequency data Florian Clemente , Mathieu Gautier , Renaud Vitalis Conférence Jacques Monod "Coalescence des approches théoriques et expérimentales en génomique évolutive et biologie des systèmes", Oct 2016, Roscoff, France Conference papers hal-02795877v1
	A new method to detect and measure selection from genome-wide SNP data Renaud Vitalis Journées modèle aléatoire pour l'écologie et l'évolution, Jan 2016, Montpellier, France Conference papers hal-02795635v1
	Assessing the risks of Puumala virus emergence from immunogenomics of its reservoir, the bank vole Myodes glareolus, and its links with environmental variations Audrey Rohfritsch , Maxime Galan , Emmanuel Guivier , Julie Pisano , Renaud Vitalis Genes, Ecosystems and Risk of Infection (GERI 2015) Conference, Apr 2015, Heraklion, Crète, Greece Conference papers hal-02794261v1
	Assessing the risks of Puumala virus emergence from immunogenomics of its reservoir, the bank vole Myodes glareolus, and its links with environmental variations Audrey Rohfritsch , Maxime Galan , Emmanuel Guivier , Julie Pisano , Renaud Vitalis 3ème Colloque de Génomique environnementale, Institut National de Recherche Agronomique (INRA). UMR Centre de Biologie pour la Gestion des Populations (1062)., Oct 2015, Montpellier, France Conference papers hal-02794262v1
	Limites des genome-scans pour la détection de locus sous sélection chez les espèces autogames Arnaud Becheler , Renaud Vitalis , Miguel Navascués Journées ARCAD, Oct 2014, Montpellier, France Conference papers hal-02794123v1
	SelEstim : a new method to detect and measure selection from genome-wide SNP data Renaud Vitalis Research Summer School 2013 "Software and Statistical Methods for Population Genetics (SSMPG 2013), Jun 2013, Aussois, France Conference papers hal-02808248v1
	Inferring trees of population divergence with Kim_tree Mathieu M. Gautier , Renaud Vitalis Research Summer School 2013 "Software and Statistical Methods for Population Genetics (SSMPG 2013)", Aussois, France, 17-21 June, Jun 2013, Aussois, France Conference papers hal-02807574v1
	Flowering time trait, gene and microsatellite differentiation among experimental populations of wheat Bénédicte Rhoné , Isabelle Goldringer , Renaud Vitalis , Carine Remoue , Nathalie Galic 11. International congress of european society for evolutionary biology, Aug 2007, Upsala, Sweden Conference papers hal-02819999v1

	Inferring sex-specific demographic history from SNP data Florian Clemente , Mathieu Gautier , Renaud Vitalis EMBO \| EMBL Symposia: Reconstructing the Human Past - Using Ancient and Modern Genomics, Mar 2019, Heidelberg, Germany. , 2019 Conference poster hal-02787381v1
	Temporal FST genome scans: the case of partially selfing populations Miguel Navascués , Arnaud Becheler , Laurène Gay , Joelle Ronfort , Renaud Vitalis 2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. 2018 Conference poster hal-02786861v1
	Measuring genetic differentiation from pooled population samples Valentin Hivert , Raphaël Leblois , Eric Petit , Mathieu Gautier , Renaud Vitalis 2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. 2018 Conference poster hal-02785674v1
	Temporal FST genome scans: the case of partially selfing populations Miguel Navascués , Arnaud Becheler , Laurène Gay , Joelle Ronfort , Renaud Vitalis Sex uncovered: the evolutionary biology of reproductive systems, Apr 2018, Roscoff, France. 1 p., 2018, ⟨10.6084/m9.figshare.13010312.v1⟩ Conference poster hal-02786307v1
	Tracking adaptation in selfing plant populations Miguel Navascués , Arnaud Becheler , Margaux Jullien , Léa Frachon , Cyril Libourel Conférence Jacques Monod "Coalescence des approches théoriques et expérimentales en génomique évolutive et biologie des systèmes", Apr 2016, Roscoff, France. , 2016 Conference poster hal-02801759v1
	Tracking adaptation to environmental changes: selfing and detection of loci under selection Arnaud Becheler , Renaud Vitalis , Miguel Navascués 15. Congress of the European Society for Evolutionary Biology (ESEB 2015), Aug 2015, Lausanne, Switzerland. , 2015, 15th Congress of the European Society for Evolutionary Biology: Abstracts Conference poster hal-02740162v1
	Detection of locus under selection from temporal samples of partial-selfing populations Arnaud Becheler , Renaud Vitalis , Miguel Navascués SMBE Satellite meeting SMBEBA 2015. Investigating biological adaptation with NGS: data and models, May 2015, Saint Martin de Londres, France. 2015 Conference poster hal-02797018v1

	Génétique et évolution des populations et des métapopulations I. Olivieri , Renaud Vitalis , P.H. Gouyon Biologie Evolutive, 2ème ed., De Boeck Université, 1 000 p., 2016, 9782807302969 Book sections hal-02795178v1
	Is there a genetic paradox of biological invasion? Arnaud Estoup , Virginie Ravigné , Ruth Hufbauer , Renaud Vitalis , Mathieu Gautier Annual Review of Ecology, Evolution and Systematics, 47, ANNUAL REVIEWS, pp.22, 2016, Annual Review of Ecology, Evolution, and Systematics, 978-0-8243-1447-7. ⟨10.1146/annurev-ecolsys-121415-032116⟩ Book sections hal-01608618v1
	DETSEL: An R-Package to Detect Marker Loci Responding to Selection Renaud Vitalis Data Production and Analysis in Population Genomics : Methods and Protocols, 888, Humana Press, 2012, Methods in Molecular Biology, 978-1-61779-869-6 978-1-61779-870-2. ⟨10.1007/978-1-61779-870-2_16⟩ Book sections hal-02807927v1

	Génétique des populations subdivisées : théorie et applications Renaud Vitalis Ecologie, Environnement. Université Montpellier II - Sciences et Techniques du Languedoc, 2001. Français. ⟨NNT : ⟩ Theses tel-00535513v1

	Inférence en génétique et génomique des populations Renaud Vitalis Génétique des populations [q-bio.PE]. Université montpellier II, 2012 Habilitation à diriger des recherches tel-04188620v1

	DriftTest, a computer program to detect selection from temporal genetic differentiation in partially selfing populations Miguel de Navascués , Renaud Vitalis 2023, ⟨swh:1:dir:9f8e0179590e2861c7fad201d73ef6afeca4383e;origin=https://hal.archives-ouvertes.fr/hal-04182175;visit=swh:1:snp:f41cbcf47421e571b77176d55187fc1a843cadea;anchor=swh:1:rel:c8a1373c7d016818ebdbfb985bbde4f349eb3904;path=/⟩ Software hal-04182175v1
	TempoDiff: a computer program to detect selection from temporal genetic differentiation Renaud Vitalis , Laurène Gay , Miguel Navascués 2017 Software hal-01602312v1
	DetSel 1.0.2 (paquetage R) Renaud Vitalis 2013 Software hal-02804160v1
	SelEstim Renaud Vitalis 2013 Software hal-02802350v1
	KimTree : a program to infer population divergence times using genome-wide SNP data Mathieu M. Gautier , Renaud Vitalis 2013 Software hal-02803111v1

Renaud VITALIS

Publications

Revisiting the historical scenario of a disease dissemination using genetic data and Approximate Bayesian Computation methodology: The case of Pseudocercospora fijiensis invasion in Africa

Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift

ƒ‐statistics estimation and admixture graph construction with Pool‐Seq or allele count data using the R package poolfstat

Gene copy number variations at the within-host population level modulate gene expression in a multipartite virus

Extending Approximate Bayesian Computation with Supervised Machine Learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest

Power and limits of selection genome scans on temporal data from a selfing population

Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

Preliminary insights into the genetics of bank vole tolerance to Puumala hantavirus in Sweden

Measuring Genetic Differentiation from Pool-seq Data

Inferring sex-specific demographic history from SNP data

Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races

Deciphering the demographic history of allochronic differentiation in the pine processionary moth Thaumetopoea pityocampa

Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

Large-scale phylogeographic study of the cosmopolitan aphid pest Brachycaudus helichrysi reveals host plant associated lineages that evolved in allopatry

Microevolution of bank voles (Myodes glareolus) at neutral and immune-related genes during multiannual dynamic cycles: consequences for Puumala hantavirus epidemiology.

REHH 2.0: a reimplementation of the R package REHH to detect positive selection from haplotype structure

Subspecific taxonomy of the desert locust, Schistocerca gregaria (Orthoptera: Acrididae), based on molecular and morphological characters

New set of microsatellite markers for the spotted-wing Drosophila suzukii (Diptera: Drosophilidae): a promising molecular tool for inferring the invasion history of this major insect pest

Maximum-Likelihood Inference of Population Size Contractions from Microsatellite Data

Detecting correlation between allele frequencies and environmental variables as a signature of selection. A fast computational approach for genome-wide studies

Detecting and Measuring Selection from Gene Frequency Data

Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia

The joint evolution of dispersal and dormancy in a metapopulation with local extinctions and kin competition

When history repeats itself: Exploring the genetic architecture of host-plant adaptation in two closely related lepidopteran species

Inferring Population Histories Using Genome-Wide Allele Frequency Data

Large-scale candidate gene scan reveals the role of chemoreceptor genes in host plant specialization and speciation in the pea aphid

Rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

Inbreeding depression is purged in the invasive insect Harmonia axyridis

Low regional diversity of late cave bears mitochondiral DNA at the time of Chauvet Aurignacian paintings

Inferring population decline and expansion from microsatellite data: A simulation-based evaluation of the Msvar method

Scanning the European corn borer (Ostrinia spp.) genome for adptive divergence between host-affiliated species

Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus

Population differentiation of sessile oak at thealtitudinal front of migration in the French Pyrenees

Evolution of flowering time in experimental wheat populations: a comprehensive approach to detect genetic signatures of natural selection.

Limited dispersal in mobile hunter-gatherer Baka Pygmies.

Frequency of the AGT Pro11Leu polymorphism in humans: Does diet matter?

Quantifying male-biased dispersal among social groups in the collared peccary (Pecari tajacu) using analyses based on mtDNA variation.

In defence of model-based inference in phylogeography.

In the heartland of Eurasia: the multilocus genetic landscape of Central Asian populations

Genomic pattern of adaptive divergence in Arabidopsis halleri, a model species for tolerance to heavy metal

Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa.

Sex-specific genetic structure and social organization in Central Asia: insights from a multi-locus study.

The evolution of dispersal in a Levins type metapopulation model

When genes go to sleep: The population genetic consequences of seed dormancy and monocarpic perenniality

When genes go to sleep : the population genetics consequences of seed dormancy and monocarpic perenniality

Detsel 1.0 : a computer program to detect markers responding to selection

Multi-locus genetic structure at contrasted spatial scales in the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)

Sex-specific genetic differentiation and coalescence times : estimating sex-biased dispersal rates

Sex-specific genetic differentiation and coalescence times: estimating sex-biased dispersal rates

Multilocus genetic structure at contrasted spatial scales of the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)1

Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population

Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population

Interpretation of variation across marker loci as evidence of selection

La biologie des extinctions

Characterization of microsatellite loci in the endangered species of fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)

Interpretation of Variation Across Marker Loci as Evidence of Selection

Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population.

Characterization of microsatellite loci in the endangered species of fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)

Estimation of effective population size and migration rate from one- and two-locus identity measures.

Estimation of Effective Population Size and Migration Rate From One- and Two-Locus Identity Measures

estim 1.0: a computer program to infer population parameters from one- and two-locus gene identity probabilities

La Biologie des Extinctions

Isolation and characterization of microsatellites in the endemic species Centaurea corymbosa Pourret (Asteraceae) and other related species

Isolation and characterization of microsatellites in the endemic species Centaurea corymbosa Pourret (Asteraceae) and other related species

Système génétique, polymorphisme neutre et sélectionné : implications en biologie de la conservation

Système génétique, polymorphisme neutre et sélectionné : implications en biologie de la conservation

Marsilea strigosa Willd. : statut génétique et démographique d’une espèce menacée

Relationships between transposable elements based upon their integrase-transposase domains : is there a common ancestor ?

Gene copy number variation impacts on gene expression in a multipartite virus

Inferring sex-specific demographic history from SNP data

How to characterize local adaptation from genome-wide polymorphisms?

How to characterize local adaptation from genome-wide polymorphisms?

Estimation of the sex-ratio in population trees from allele frequency data

Inferring sex-specific population histories using genome-wide gene frequency data

A new method to detect and measure selection from genome-wide SNP data

Assessing the risks of Puumala virus emergence from immunogenomics of its reservoir, the bank vole Myodes glareolus, and its links with environmental variations

Assessing the risks of Puumala virus emergence from immunogenomics of its reservoir, the bank vole Myodes glareolus, and its links with environmental variations

Limites des genome-scans pour la détection de locus sous sélection chez les espèces autogames