Renaud VITALIS

Publications

Article dans une revue (69)

Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource Joaquin C. B. Nunez,Marta Coronado-Zamora,Mathieu Gautier,Martin Kapun,Sonja Steindlet al. Molecular Biology and Evolution, 2025, 42 (8), pp.msaf132. ⟨10.1093/molbev/msaf132⟩ Article dans une revue hal-04779897v2
Revisiting the historical scenario of a disease dissemination using genetic data and Approximate Bayesian Computation methodology: The case of Pseudocercospora fijiensis invasion in Africa Aude Gilabert,A Rieux,Stéphanie Robert,Renaud Vitalis,Marie-Françoise Zapateret al. Ecology and Evolution, 2023, 13 (4), pp.e10013. ⟨10.1002/ece3.10013⟩ Article dans une revue hal-04119272v1
ƒ‐statistics estimation and admixture graph construction with Pool‐Seq or allele count data using the R package poolfstat Mathieu Gautier,Renaud Vitalis,Laurence Flori,Arnaud Estoup Molecular Ecology Resources, 2022, 22 (4), pp.1394-1416. ⟨10.1111/1755-0998.13557⟩ Article dans une revue hal-03481066v1
Gene copy number variations at the within-host population level modulate gene expression in a multipartite virus Romain Gallet,Jérémy Di Mattia,Sébastien Ravel,Jean-Louis Zeddam,Renaud Vitaliset al. Virus Evolution, 2022, 8 (2), pp.veac058. ⟨10.1093/ve/veac058⟩ Article dans une revue hal-03747742v1
Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift Laurène Gay,Julien Dhinaut,Margaux Jullien,Renaud Vitalis,Miguel Navascuéset al. Ecology and Evolution, 2022, 12 (1), pp.e8555. ⟨10.1002/ece3.8555⟩ Article dans une revue hal-02922123v1
Power and limits of selection genome scans on temporal data from a selfing population Miguel Navascués,Arnaud Becheler,Laurène Gay,Joëlle Ronfort,Karine Loridonet al. Peer Community Journal, 2021, 1, pp.e37. ⟨10.24072/pcjournal.47⟩ Article dans une revue hal-02922124v1
Extending Approximate Bayesian Computation with Supervised Machine Learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest François‐david Collin,Ghislain Durif,Louis Raynal,Eric Lombaert,Mathieu Gautieret al. Molecular Ecology Resources, 2021, 21 (8), pp.2598-2613. ⟨10.1111/1755-0998.13413⟩ Article dans une revue hal-03229207v1
Inferring sex-specific demographic history from SNP data Florian Clemente,Mathieu Gautier,Renaud Vitalis PLoS Genetics, 2018, 14 (1), ⟨10.1371/journal.pgen.1007191⟩ Article dans une revue hal-02388049v1
Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races Pierre Nouhaud,Mathieu Gautier,Anaïs Gouin,Julie Jaquiéry,Jean Peccoudet al. Molecular Ecology, 2018, 27 (16), pp.3287 - 3300. ⟨10.1111/mec.14799⟩ Article dans une revue hal-01892027v1
Preliminary insights into the genetics of bank vole tolerance to Puumala hantavirus in Sweden Audrey Rohfritsch,Maxime Galan,Mathieu Gautier,Karim Gharbi,Gert Olssonet al. Ecology and Evolution, 2018, 8 (22), pp.11273-11292. ⟨10.1002/ece3.4603⟩ Article dans une revue hal-02388043v1
Deciphering the demographic history of allochronic differentiation in the pine processionary moth Thaumetopoea pityocampa Raphaël Leblois,Mathieu Gautier,Audrey Rohfritsch,Julien Foucaud,Christian Burbanet al. Molecular Ecology, 2018, 27 (1), pp.264-278. ⟨10.1111/mec.14411⟩ Article dans une revue hal-02626319v1
Measuring Genetic Differentiation from Pool-seq Data Valentin Hivert,Raphael Leblois,Eric Petit,Mathieu Gautier,Renaud Vitalis Genetics, 2018, 210 (1), pp.315-330. ⟨10.1534/genetics.118.300900⟩ Article dans une revue hal-01936905v1
Microevolution of bank voles (Myodes glareolus) at neutral and immune-related genes during multiannual dynamic cycles: consequences for Puumala hantavirus epidemiology. Adelaïde Dubois,Maxime Galan,Jean-François Cosson,Bertrand Gauffre,Heikki Henttonenet al. Infection, Genetics and Evolution, 2017, 49, pp.318-329. ⟨10.1016/j.meegid.2016.12.007⟩ Article dans une revue hal-01483534v1
REHH 2.0: a reimplementation of the R package REHH to detect positive selection from haplotype structure Mathieu Gautier,Alexander Klassmann,Renaud Vitalis Molecular Ecology Resources, 2017, 17 (1), pp.78-90. ⟨10.1111/1755-0998.12634⟩ Article dans une revue hal-01607599v1
Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time Léa Frachon,Cyril Libourel,Romain Villoutreix,Sébastien Carrere,Cédric Glorieuxet al. Nature Ecology & Evolution, 2017, 1, pp.1551-1561. ⟨10.1038/s41559-017-0297-1⟩ Article dans une revue hal-02622028v1
Large-scale phylogeographic study of the cosmopolitan aphid pest Brachycaudus helichrysi reveals host plant associated lineages that evolved in allopatry Megan Popkin,Joséphine Piffaretti,Anne Laure Clamens,Ge-Xia Qiao,Jing Chenet al. Biological Journal of the Linnean Society, 2017, 120 (1), pp.102 - 114 Article dans une revue hal-02623529v1
Subspecific taxonomy of the desert locust, &lt;em&gt;Schistocerca gregaria&lt;/em&gt; (Orthoptera: Acrididae), based on molecular and morphological characters Marie-Pierre Chapuis,Corinna S. Bazelet,Laurence Blondin,Antoine Foucart,Renaud Vitaliset al. Systematic Entomology, 2016, 41 (3), pp.516 - 530. ⟨10.1111/syen.12171⟩ Article dans une revue istex hal-02636000v1
New set of microsatellite markers for the spotted-wing &lt;em&gt;Drosophila suzukii&lt;/em&gt; (Diptera: Drosophilidae): a promising molecular tool for inferring the invasion history of this major insect pest Anne Fraimout,Anne Loiseau,Donald K. Price,Anne Xuéreb,Jean-François Martinet al. European Journal of Entomology, 2015, 112, pp.855-859 Article dans une revue hal-02631599v1
Detecting and Measuring Selection from Gene Frequency Data Renaud Vitalis,Mathieu M. Gautier,Kevin J. Dawson,Mark A. Beaumont Genetics, 2014, 196 (3), pp.799 - +. ⟨10.1534/genetics.113.152991⟩ Article dans une revue hal-02632620v1
Maximum-Likelihood Inference of Population Size Contractions from Microsatellite Data Raphaël Leblois,Pierre Pudlo,Néron Joseph,François Bertaux,Champak Reddy Beeravoluet al. Molecular Biology and Evolution, 2014, 31 (10), pp.2805-2823. ⟨10.1093/molbev/msu212⟩ Article dans une revue hal-02087423v1
Detecting correlation between allele frequencies and environmental variables as a signature of selection. A fast computational approach for genome-wide studies Gilles Guillot,Renaud Vitalis,Arnaud Le Rouzic,Mathieu M. Gautier Spatial Statistics, 2014, 8, pp.145 - 155. ⟨10.1016/j.spasta.2013.08.001⟩ Article dans une revue istex hal-02634708v1
When history repeats itself: Exploring the genetic architecture of host-plant adaptation in two closely related lepidopteran species Hermine Alexandre,Sergine Ponsard,Denis Bourguet,Renaud Vitalis,Philippe Audiotet al. PLoS ONE, 2013, 8 (7), ⟨10.1371/journal.pone.0069211⟩ Article dans une revue hal-01190519v1
The joint evolution of dispersal and dormancy in a metapopulation with local extinctions and kin competition Renaud Vitalis,François Rousset,Yutaka Kobayashi,Isabelle Olivieri,Sylvain Gandon Evolution - International Journal of Organic Evolution, 2013, 67 (6), pp.1676 - 1691. ⟨10.1111/evo.12069⟩ Article dans une revue hal-02388052v1
Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia Laure Ségurel,Frédéric Austerlitz,Bruno Toupance,Mathieu M. Gautier,Joanna L Kelleyet al. European Journal of Human Genetics, 2013, 21 (10), pp.1146-1151. ⟨10.1038/ejhg.2012.295⟩ Article dans une revue hal-02120826v1
Rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure Mathieu M. Gautier,Renaud Vitalis Bioinformatics, 2012, 28 (2), pp.1176-1177. ⟨10.1093/bioinformatics/bts115⟩ Article dans une revue hal-02648143v1
Inferring Population Histories Using Genome-Wide Allele Frequency Data Mathieu Gautier,Renaud Vitalis Molecular Biology and Evolution, 2012, 30 (3), pp.654-668. ⟨10.1093/molbev/mss257⟩ Article dans une revue hal-00783026v1
Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex. Julie Jaquiéry,Solenn Stoeckel,P. Nouhaud,L. Mieuzet,F. Mahéoet al. Molecular Ecology, 2012, 21 (21), pp.5251-64. ⟨10.1111/mec.12048⟩ Article dans une revue istex hal-00753439v1
Large-scale candidate gene scan reveals the role of chemoreceptor genes in host plant specialization and speciation in the pea aphid Carole Smadja,Björn Canbäck,Renaud Vitalis,Mathieu Gautier,Julia Ferrariet al. Evolution - International Journal of Organic Evolution, 2012, 66 (9), pp.2723 - 2738. ⟨10.1111/j.1558-5646.2012.01612.x⟩ Article dans une revue hal-02652662v1
Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus Diego Ayala,Michael C. Fontaine,Anna Cohuet,Didier Fontenille,Renaud Vitaliset al. Molecular Biology and Evolution, 2011, 28 (1), pp.745-758. ⟨10.1093/molbev/msq248⟩ Article dans une revue hal-02651247v1
Inbreeding depression is purged in the invasive insect Harmonia axyridis Benoit Facon,Ruth A. Hufbauer,Ashraf Tayeh,Anne Loiseau,Eric Lombaertet al. Current Biology, 2011, 21 (5), pp.424-427. ⟨10.1016/j.cub.2011.01.068⟩ Article dans une revue hal-02644352v1
Scanning the European corn borer (&lt;em&gt;Ostrinia&lt;/em&gt; spp.) genome for adptive divergence between host-affiliated species Afiwa Midamegbe,Renaud Vitalis,Thibaut Malausa,Emilie Delava,Sandrine Cros-Arteilet al. Molecular Ecology, 2011, 20, pp.1414-1430. ⟨10.1111/j.1365-294X.2011.05035.x⟩ Article dans une revue istex hal-02644072v1
Inferring population decline and expansion from microsatellite data: A simulation-based evaluation of the Msvar method Christophe Girod,Renaud Vitalis,Raphaël Leblois,Hélène Fréville Genetics, 2011, 188 (1), pp.165-179. ⟨10.1534/genetics.110.121764⟩ Article dans une revue hal-02643411v1
Low regional diversity of late cave bears mitochondiral DNA at the time of Chauvet Aurignacian paintings Céline Bon,Veronique Berthonaud,Philippe Fosse,Bernard Gély,Frédéric Maksudet al. Journal of Archaeological Science, 2011, 38, pp.1886-1895. ⟨10.1016/j.jas.2011.03.033⟩ Article dans une revue istex hal-02649315v1
Quantifying male-biased dispersal among social groups in the collared peccary (Pecari tajacu) using analyses based on mtDNA variation. J. D. Cooper,Renaud Vitalis,P. M. Waser,D. Gopurenko,E. C. Hellgrenet al. Heredity, 2010, 104 (1), pp.79-87. ⟨10.1038/hdy.2009.102⟩ Article dans une revue hal-00535516v1
Limited dispersal in mobile hunter-gatherer Baka Pygmies. Paul Verdu,Raphaël Leblois,Alain Froment,Sylvain Théry,Serge Bahuchetet al. Biology Letters, 2010, 6 (6), pp.858-861. ⟨10.1098/rsbl.2010.0192⟩ Article dans une revue hal-00504086v1
In defense of model-based inference in phylogeography M. Beaumont,R. Nielsen,Cédric Robert Robert,J. Hey,O. Gaggiottiet al. Molecular Ecology, 2010, 19 (3), pp.436-446. ⟨10.1111/j.1365-294X.2009.04515.x⟩ Article dans une revue hal-00601928v1
Evolution of flowering time in experimental wheat populations: a comprehensive approach to detect genetic signatures of natural selection. Bénédicte Rhoné,Renaud Vitalis,Isabelle Goldringer,Isabelle Bonnin Evolution - International Journal of Organic Evolution, 2010, 64 (7), pp.2110-25. ⟨10.1111/j.1558-5646.2010.00970.x⟩ Article dans une revue istex hal-00535515v1
In defence of model-based inference in phylogeography. Mark A Beaumont,Rasmus Nielsen,Christian P. Robert,Jody Hey,Oscar Gaggiottiet al. Molecular Ecology, 2010, 19 (3), epub ahead of print. ⟨10.1111/j.1365-294X.2009.04515.x⟩ Article dans une revue hal-00450030v1
In the heartland of Eurasia: the multilocus genetic landscape of Central Asian populations Evelyne Heyer,Begoña Martínez-Cruz,Renaud Vitalis,Laure Ségurel,Frédéric Austerlitzet al. European Journal of Human Genetics, 2010, ⟨10.1038/ejhg.2010.153⟩ Article dans une revue hal-00574375v1
Population differentiation of sessile oak at thealtitudinal front of migration in the French Pyrenees F. Alberto,J. Niort,J. Derory,O. Lepais,Renaud Vitaliset al. Molecular Ecology, 2010, 19 (13), pp.2626-2639. ⟨10.1111/j.1365-294X.2010.04631.x⟩ Article dans une revue istex hal-01207890v1
Frequency of the AGT Pro11Leu polymorphism in humans: Does diet matter? Laure Ségurel,Sophie Lafosse,Evelyne Heyer,Renaud Vitalis Annals of Human Genetics, 2010, 74 (1), pp.57-64. ⟨10.1111/j.1469-1809.2009.00549.x⟩ Article dans une revue hal-00450027v1
Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa. Paul Verdu,Frédéric Austerlitz,Arnaud Estoup,Renaud Vitalis,Myriam Georgeset al. Current Biology, 2009, 19 (4), pp.312-8. ⟨10.1016/j.cub.2008.12.049⟩ Article dans une revue hal-00397221v1
Genomic pattern of adaptive divergence in Arabidopsis halleri, a model species for tolerance to heavy metal Claire-Lise Meyer,Renaud Vitalis,Pierre Saumitou-Laprade,Vincent Castric Molecular Ecology, 2009, 18, pp.2050-2062 Article dans une revue hal-00383559v1
Sex-specific genetic structure and social organization in Central Asia: insights from a multi-locus study. Laure Ségurel,Begoña Martínez-Cruz,Lluis Quintana-Murci,Patricia Balaresque,Myriam Georgeset al. PLoS Genetics, 2008, 4 (9), pp.e1000200. ⟨10.1371/journal.pgen.1000200⟩ Article dans une revue hal-00328137v1
The evolution of dispersal in a Levins type metapopulation model Vincent a A Jansen,Renaud Vitalis Evolution - International Journal of Organic Evolution, 2007, 61, pp.2386-2397 Article dans une revue hal-00273240v1
When genes go to sleep : the population genetics consequences of seed dormancy and monocarpic perenniality Renaud Vitalis,S. Glemin,I. Olivieri The American Naturalist, 2004, 163, pp.295-311 Article dans une revue hal-00273249v1
When genes go to sleep: The population genetic consequences of seed dormancy and monocarpic perenniality Renaud Vitalis,Sylvain Glémin,Isabelle Olivieri The American Naturalist, 2004, 163 (2), pp.295-311. ⟨10.1086/381041⟩ Article dans une revue halsde-00326231v1
Detsel 1.0 : a computer program to detect markers responding to selection Renaud Vitalis,K. Dawson,P. Boursot,K. Belkhir Journal of Heredity, 2003, 94, pp.429-431 Article dans une revue hal-00273253v1
Multilocus genetic structure at contrasted spatial scales of the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)1 Renaud Vitalis,Miquel Riba,Bruno Colas,Patrick Grillas,Isabelle Olivieri American Journal of Botany, 2002, 89 (7), pp.1142-1155. ⟨10.3732/ajb.89.7.1142⟩ Article dans une revue halsde-00334807v1
Multi-locus genetic structure at contrasted spatial scales in the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta) Renaud Vitalis,M. Riba,B. Colas,P. Grillas,I. Olivieri American Journal of Botany, 2002, 89, pp.1142-1155 Article dans une revue hal-00273258v1
Sex-specific genetic differentiation and coalescence times : estimating sex-biased dispersal rates Renaud Vitalis Molecular Ecology Notes, 2002, 11, pp.125-138 Article dans une revue hal-00273257v1
Sex-specific genetic differentiation and coalescence times: estimating sex-biased dispersal rates Renaud Vitalis Molecular Ecology, 2002, 11 (1), pp.125 - 138. ⟨10.1046/j.0962-1083.2001.01414.x⟩ Article dans une revue istex halsde-00341007v1
Estimation of effective population size and migration rate from one- and two-locus identity measures. Renaud Vitalis,D. Couvet Genetics, 2001, 157 (2), pp.911-25 Article dans une revue hal-00535518v1
Estimation of Effective Population Size and Migration Rate From One- and Two-Locus Identity Measures Renaud Vitalis,Denis Couvet Genetics, 2001, 157 (2), pp.911-925. ⟨10.1093/genetics/157.2.911⟩ Article dans une revue halsde-00342380v1
estim 1.0: a computer program to infer population parameters from one- and two-locus gene identity probabilities Renaud Vitalis,Denis Couvet Molecular Ecology Notes, 2001, 1 (4), pp.354 - 356. ⟨10.1046/j.1471-8278.2001.00086.x⟩ Article dans une revue istex halsde-00341848v1
La Biologie des Extinctions Isabelle Olivieri,Renaud Vitalis Médecine/Sciences, 2001, 17 (1), pp.63-69. ⟨10.4267/10608/1788⟩ Article dans une revue halsde-00345442v1
Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population. Renaud Vitalis,D. Couvet Genetical Research, 2001, 77 (1), pp.67-81 Article dans une revue hal-00535519v1
Interpretation of Variation Across Marker Loci as Evidence of Selection Renaud Vitalis,Kevin Dawson,Pierre Boursot Genetics, 2001, 158 (4), pp.1811-1823. ⟨10.1093/genetics/158.4.1811⟩ Article dans une revue halsde-00342552v1
Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population Renaud Vitalis,Denis Couvet Genetics Research, 2001, 77 (1), pp.67-81. ⟨10.1017/S0016672300004833⟩ Article dans une revue halsde-00341816v1
Interpretation of variation across marker loci as evidence of selection Renaud Vitalis,K. Dawson,P. Boursot Genetics, 2001, 158, pp.1811-1823 Article dans une revue hal-00273259v1
Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population Renaud Vitalis,D. Couvet Genetical Research, 2001, 77, pp.67-81 Article dans une revue hal-00273266v1
Characterization of microsatellite loci in the endangered species of fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta) Renaud Vitalis,Marie-Pierre Dubois,Isabelle Olivieri Molecular Ecology Notes, 2001, 1 (1/2), pp.64-66. ⟨10.1046/j.1471-8278.2001.00026.x⟩ Article dans une revue istex halsde-00335014v1
Isolation and characterization of microsatellites in the endemic species Centaurea corymbosa Pourret (Asteraceae) and other related species H. Freville,E. Imbert,F. Justy,Renaud Vitalis,I. Olivieri Molecular Ecology, 2000, 9, pp.1671-1672 Article dans une revue hal-00273268v1
Isolation and characterization of microsatellites in the endemic species Centaurea corymbosa Pourret (Asteraceae) and other related species Hélène Fréville,Eric Imbert,Fabienne Justy,Renaud Vitalis,Isabelle Olivieri Molecular Ecology, 2000, 9 (10), pp.1671 - 1672. ⟨10.1046/j.1365-294x.2000.01045-7.x⟩ Article dans une revue istex halsde-00335189v1
Système génétique, polymorphisme neutre et sélectionné : implications en biologie de la conservation Bernard Godelle,Frédéric Austerlitz,Stéphanie Brachet,Bruno Colas,Joël Cuguenet al. Genetics Selection Evolution, 1998, 30 (1), pp.S15-S28. ⟨10.1186/1297-9686-30-S1-S15⟩ Article dans une revue hal-00894230v1
Marsilea strigosa Willd. : statut génétique et démographique d’une espèce menacée Renaud Vitalis,Bruno Colas,Miquel Riba Rovira,Isabelle Olivieri Ecologia mediterranea, 1998, 24 (2), pp.145-157. ⟨10.3406/ecmed.1998.1858⟩ Article dans une revue hal-03496614v1
Système génétique, polymorphisme neutre et sélectionné: implications en biologie de la conservation B. Godelle,Frédéric Austerlitz,Solène Brachet,B. Colas,Joël Cuguenet al. Genetics Selection Evolution, 1998, 30 (suppl. 1), pp.S15-S28 Article dans une revue hal-02698599v1
Système génétique, polymorphisme neutre et sélectionné : implications en biologie de la conservation B. Godelle,F. Austerlitz,S. Brachet,B. Colas,J. Cuguenet al. Genetics Selection Evolution, 1998, 30 (Supl 1), pp.S15-S28. ⟨10.1186/1297-9686-30-S1-S15⟩ Article dans une revue hal-00273269v1
Relationships between transposable elements based upon their integrase-transposase domains : is there a common ancestor ? P. Capy,Renaud Vitalis,T. Langin,D. Higuet,C. Bazin Journal of Molecular Evolution, 1996, 3, pp.359-368 Article dans une revue hal-00273270v1

Communication dans un congrès (14)

Gene copy number variation impacts on gene expression in a multipartite virus Stéphane Blanc,Romain Gallet,Jérémy Di Mattia,Sébastien Ravel,Renaud Vitaliset al. 10. Workshop in Virus Evolution, Mar 2019, Pennsylvania, United States Communication dans un congrès hal-02786127v1
Inferring sex-specific demographic history from SNP data Florian Clemente,Mathieu Gautier,Renaud Vitalis 2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. 18 p Communication dans un congrès hal-02785552v1
How to characterize local adaptation from genome-wide polymorphisms? Renaud Vitalis DrosEU/ESEB STN Summer School on Adaptation Genomics, Aug 2018, Montpellier, France Communication dans un congrès hal-02785179v1
How to characterize local adaptation from genome-wide polymorphisms? Renaud Vitalis Journée thématique : Inférence de processus évolutifs à partir de données génomiques, théorie et pratique, Groupement de Recherche Génomique Environnementale (GDR3692). FRA. Approche Interdisciplinaire de l'Evolution Moléculaire (AIEM), FRA., May 2018, Paris, France Communication dans un congrès hal-02785203v1
Estimation of the sex-ratio in population trees from allele frequency data Florian Clemente,Mathieu Gautier,Renaud Vitalis Mathematical and Computational Evolutionary Biology (MCEB 2017), Jun 2017, Porquerolles, France Communication dans un congrès hal-02786395v1
A new method to detect and measure selection from genome-wide SNP data Renaud Vitalis Journées modèle aléatoire pour l'écologie et l'évolution, Jan 2016, Montpellier, France Communication dans un congrès hal-02795635v1
Inferring sex-specific population histories using genome-wide gene frequency data Florian Clemente,Mathieu Gautier,Renaud Vitalis Conférence Jacques Monod "Coalescence des approches théoriques et expérimentales en génomique évolutive et biologie des systèmes", Oct 2016, Roscoff, France Communication dans un congrès hal-02795877v1
Assessing the risks of Puumala virus emergence from immunogenomics of its reservoir, the bank vole &lt;em&gt;Myodes glareolus&lt;/em&gt;, and its links with environmental variations Audrey Rohfritsch,Maxime Galan,Emmanuel Guivier,Julie Pisano,Renaud Vitaliset al. Genes, Ecosystems and Risk of Infection (GERI 2015) Conference, Apr 2015, Heraklion, Greece Communication dans un congrès hal-02794261v1
Assessing the risks of Puumala virus emergence from immunogenomics of its reservoir, the bank vole &lt;em&gt;Myodes glareolus&lt;/em&gt;, and its links with environmental variations Audrey Rohfritsch,Maxime Galan,Emmanuel Guivier,Julie Pisano,Renaud Vitaliset al. 3ème Colloque de Génomique environnementale, Institut National de Recherche Agronomique (INRA). UMR Centre de Biologie pour la Gestion des Populations (1062)., Oct 2015, Montpellier, France Communication dans un congrès hal-02794262v1
Limites des genome-scans pour la détection de locus sous sélection chez les espèces autogames Arnaud Becheler,Renaud Vitalis,Miguel Navascués Journées ARCAD, Oct 2014, Montpellier, France Communication dans un congrès hal-02794123v1
Inferring trees of population divergence with Kim_tree Mathieu M. Gautier,Renaud Vitalis Research Summer School 2013 "Software and Statistical Methods for Population Genetics (SSMPG 2013), Jun 2013, Aussois, France Communication dans un congrès hal-02807574v1
SelEstim : a new method to detect and measure selection from genome-wide SNP data Renaud Vitalis Research Summer School 2013 "Software and Statistical Methods for Population Genetics (SSMPG 2013), Jun 2013, Aussois, France Communication dans un congrès hal-02808248v1
Flowering time trait, gene and microsatellite differentiation among experimental populations of wheat Bénédicte Rhoné,Isabelle Goldringer,Renaud Vitalis,Carine Remoue,Nathalie Galicet al. 11. International congress of european society for evolutionary biology, Aug 2007, Uppsala, Sweden Communication dans un congrès hal-02819999v1
Système génétique, polymorphisme neutre et sélectionné: implications en biologie de la conservation B. Godelle,Frédéric Austerlitz,Solène Brachet,B. Colas,Joël Cuguenet al. Colloque BRG/USTL. Méthodologies de gestion et de conservation des ressources génétiques, Oct 1997, Lille, France Communication dans un congrès hal-02841136v1

Poster de conférence (7)

Inferring sex-specific demographic history from SNP data Florian Clemente,Mathieu Gautier,Renaud Vitalis EMBO | EMBL Symposia: Reconstructing the Human Past - Using Ancient and Modern Genomics, Mar 2019, Heidelberg, Germany. , 2019 Poster de conférence hal-02787381v1
Temporal FST genome scans: the case of partially selfing populations Miguel Navascués,Arnaud Becheler,Laurène Gay,Joelle Ronfort,Renaud Vitalis Sex uncovered: the evolutionary biology of reproductive systems, Apr 2018, Roscoff, France. 1 p., 2018, ⟨10.6084/m9.figshare.13010312.v1⟩ Poster de conférence hal-02786307v1
Measuring genetic differentiation from pooled population samples Valentin Hivert,Raphaël Leblois,Eric Petit,Mathieu Gautier,Renaud Vitalis 2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. 2018 Poster de conférence hal-02785674v1
Temporal FST genome scans: the case of partially selfing populations Miguel Navascués,Arnaud Becheler,Laurène Gay,Joelle Ronfort,Renaud Vitalis 2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France. 2018 Poster de conférence hal-02786861v1
Tracking adaptation in selfing plant populations Miguel Navascués,Arnaud Becheler,Margaux Jullien,Léa Frachon,Cyril Libourelet al. Conférence Jacques Monod "Coalescence des approches théoriques et expérimentales en génomique évolutive et biologie des systèmes", Apr 2016, Roscoff, France. , 2016 Poster de conférence hal-02801759v1
Detection of locus under selection from temporal samples of partial-selfing populations Arnaud Becheler,Renaud Vitalis,Miguel Navascués SMBE Satellite meeting SMBEBA 2015. Investigating biological adaptation with NGS: data and models, May 2015, Saint Martin de Londres, France. 2015 Poster de conférence hal-02797018v1
Tracking adaptation to environmental changes: selfing and detection of loci under selection Arnaud Becheler,Renaud Vitalis,Miguel Navascués 15. Congress of the European Society for Evolutionary Biology (ESEB 2015), Aug 2015, Lausanne, Switzerland. , 2015, 15th Congress of the European Society for Evolutionary Biology: Abstracts Poster de conférence hal-02740162v1

Chapitre d'ouvrage (3)

Is there a genetic paradox of biological invasion? Arnaud Estoup,Virginie Ravigné,Ruth Hufbauer,Renaud Vitalis,Mathieu Gautieret al. Annual Review of Ecology, Evolution and Systematics, 47, ANNUAL REVIEWS, pp.22, 2016, Annual Review of Ecology, Evolution, and Systematics, 978-0-8243-1447-7. ⟨10.1146/annurev-ecolsys-121415-032116⟩ Chapitre d'ouvrage hal-01608618v1
Génétique et évolution des populations et des métapopulations I. Olivieri,Renaud Vitalis,P.H. Gouyon Biologie Evolutive, 2ème ed., De Boeck Université, 1 000 p., 2016, 9782807302969 Chapitre d'ouvrage hal-02795178v1
DETSEL: An R-Package to Detect Marker Loci Responding to Selection Renaud Vitalis Data Production and Analysis in Population Genomics : Methods and Protocols, 888, Humana Press, 2012, Methods in Molecular Biology, 978-1-61779-869-6 978-1-61779-870-2. ⟨10.1007/978-1-61779-870-2_16⟩ Chapitre d'ouvrage hal-02807927v1

Thèse (1)

Génétique des populations subdivisées : théorie et applications Renaud Vitalis Ecologie, Environnement. Université Montpellier II - Sciences et Techniques du Languedoc, 2001. Français. ⟨NNT : ⟩ Thèse tel-00535513v1

HDR (1)

Inférence en génétique et génomique des populations Renaud Vitalis Génétique des populations [q-bio.PE]. Université montpellier II, 2012 HDR tel-04188620v1

Logiciel (5)

DriftTest, a computer program to detect selection from temporal genetic differentiation in partially selfing populations Miguel de Navascués,Renaud Vitalis 2023, ⟨swh:1:dir:9f8e0179590e2861c7fad201d73ef6afeca4383e;origin=https://hal.archives-ouvertes.fr/hal-04182175;visit=swh:1:snp:f41cbcf47421e571b77176d55187fc1a843cadea;anchor=swh:1:rel:c8a1373c7d016818ebdbfb985bbde4f349eb3904;path=/⟩ Logiciel hal-04182175v1
TempoDiff: a computer program to detect selection from temporal genetic differentiation Renaud Vitalis,Laurène Gay,Miguel Navascués 2017 Logiciel hal-01602312v1
SelEstim Renaud Vitalis 2013 Logiciel hal-02802350v1
DetSel 1.0.2 (paquetage R) Renaud Vitalis 2013 Logiciel hal-02804160v1
KimTree : a program to infer population divergence times using genome-wide SNP data Mathieu M. Gautier,Renaud Vitalis 2013 Logiciel hal-02803111v1