Rodolphe Thiébaut

Présentation

Position title

· Professor (PUPH) ofPublic Health,Bordeaux University

· **Director the INSERM/INRIA team SISTM: Statistics in Systems Biology and Translational Medicine (Since 2013, 25 people, http://www.bordeaux-population-health.center/en/teams/statistics-in-systems-biology-and-translationnal-medicine-sistm/))

· Director of the Bioinformatics/Biostatistics Division of the Vaccine Research Institute (VRI, http://vaccine-research-institute.fr/en/)

· Director of the Department of research in Public Health at the Bordeaux University (Since 2019) and Deputy Director of the INSERM Research Centre U1219 (Since 2008, formally U897, 460 people, http://www.bordeaux-population-health.center/en/)

· Director of the Medical Information Department at Bordeaux Hospital (Since 2019)

· Director of the Digital Public Health Graduate School (Since 2018)

· Member of the INSERM scientific committee (Since 2017)

Education

Institution and location

Degree

Year

Field of study

Bordeaux University

M.D.

2000

Public Health

Bordeaux University

Ph.D.

2002

Biostatistics

Bordeaux University

Diploma for PhD student supervision (HDR)

2004

Previous Positions

==================

ü 2013-2019: Director of the Bordeaux Hospital Clinical Trial Unit (Since 2013, 25 people, http://usmr.isped.u-bordeaux2.fr)

ü 2012-2014: Deputy director of the Institute of Research in Public Health (IReSP http://www.iresp.net/)

ü 2009-2014: Deputy Director of the Bordeaux School of Public Health (ISPED) for Research (www.isped.u-bordeaux.fr)

ü 2002-2013: Researcher (CR2, CR1) and Research Director (DR2) at the French Institute for Health and Medical Research (INSERM), Research Centre U897 “Epidemiology and Biostatistics” (Tenure Track since 2002)

Teaching activities

ü Director of the Master in Science “Public Health Data Science” (Since 2018)

ü Responsible of the modelling unit for medical students and of the mathematics unit for medicine/science cursus

ü Analysis of longitudinal data for Master Students (Since 2000, 30 hours/year) and Summer School

Publications

Article dans une revue (226)

Santé publique numérique, sciences des données, intelligence artificielle, données massives Rodolphe Thiébaut Médecine/Sciences, 2025, 41 (1), pp.115--118. ⟨10.1051/medsci/2025132⟩ Article dans une revue hal-05547778v1
Self-collected finger-prick blood for gene expression profiling: Unveiling early immune responses in mild COVID-19 Rodolphe Thiébaut,Edouard Lhomme,Hakim Hocini,Isabelle Pellegrin,Andrea Boizard-Moracchiniet al. iScience, 2025, 29 (2), pp.114593. ⟨10.1016/j.isci.2025.114593⟩ Article dans une revue hal-05490229v1
Reservoir Computing in R: a Tutorial for Using reservoirnet to Predict Complex Time-Series Thomas Ferté,Kalidou Ba,Dan Dutartre,Pierrick Legrand,Vianney Jouhetet al. Computo, 2025, ⟨10.57750/arxn-6z34⟩ Article dans une revue hal-05208084v1
RISE: Two-Stage Rank-Based Identification of High-Dimensional Surrogate Markers Applied to Vaccinology Arthur Hughes,Layla Parast,Rodolphe Thiébaut,Boris P. Hejblum Statistics in Medicine, 2025, 44 (20-22), pp.e70241. ⟨10.1002/sim.70241⟩ Article dans une revue hal-04933460v2
In danger: HIV vaccine research and development in Europe Roger Tatoud,Yves Levy,Roger Le Grand,Jose Alcami,Giorgio Barbareschiet al. PLOS Global Public Health, 2025, 5 (4), pp.e0004364. ⟨10.1371/journal.pgph.0004364⟩ Article dans une revue hal-05084236v1
Thromboinflammation is associated with high thrombotic risk in patients with newly diagnosed myeloproliferative neoplasms Alexandre Guy,Olivier Mansier,Matisse Decilap,Alexandre Catherineau,Geoffrey Garciaet al. Leukemia, 2025 Article dans une revue inserm-05528551v1
Diagnostic accuracy of ultrashort echo times-MRI in patients with and without idiopathic pulmonary fibrosis Gaël Dournes,Ilyes Benlala,Hugues Bégueret,Chantal Raherison-Semjen,Léo Grassionet al. European Radiology, 2025, ⟨10.1007/s00330-025-12051-9⟩ Article dans une revue hal-05497662v1
Revised Diagnostic Criteria for Vascular Cognitive Impairment and Dementia—The VasCog-2-WSO Criteria Perminder Sachdev,Adam Bentvelzen,Nicole Kochan,Jiyang Jiang,Satoshi Hosokiet al. JAMA neurology, 2025, ⟨10.1001/jamaneurol.2025.3242⟩ Article dans une revue hal-05266841v1
Ambitions et principaux enseignements du colloque « Santé globale, décisions locales », organisé par la Filière Santé numérique Robert Picard,Vincent Augusto,Mathias Béjean,Antoine Bertrand,Dominique Joseph Bicoutet al. Gériatrie et Psychologie Neuropsychiatrie Du Vieillissement, 2025, 23 (2), pp.141-152. ⟨10.1684/pnv.2025.1236⟩ Article dans une revue hal-05162335v1
Helminth exposure and immune response to the two-dose heterologous Ad26.ZEBOV, MVA-BN-Filo Ebola vaccine regimen Houreratou Barry,Edouard Lhomme,Mathieu Surenaud,Moumini Nouctara,Cynthia Robinsonet al. PLoS Neglected Tropical Diseases, 2024, 18 (4), pp.e0011500. ⟨10.1371/journal.pntd.0011500⟩ Article dans une revue hal-04611372v1
Fréchet random forests for metric space valued regression with non Euclidean predictors Louis Capitaine,Jérémie Bigot,Rodolphe Thiébaut,Robin Genuer Journal of Machine Learning Research, 2024, 25 (355), pp.1-41 Article dans une revue hal-03066146v1
Long-term cellular immunity of vaccines for Zaire Ebola Virus Diseases Aurélie Wiedemann,Edouard Lhomme,Mélanie Huchon,Emile Foucat,Marion Bérerd-Camaraet al. Nature Communications, 2024, 15 (1), pp.7666. ⟨10.1038/s41467-024-51453-z⟩ Article dans une revue hal-04707176v1
Rapid access to innovative medicinal products while ensuring relevant health technology assessment. Position of the French National Authority for Health Antoine Vanier,Judith Fernandez,Sophie Kelley,Lise Alter,Patrick Semenzatoet al. BMJ Evidence-Based Medicine, 2024, 29 (1), pp.1-5. ⟨10.1136/bmjebm-2022-112091⟩ Article dans une revue hal-04056273v1
Post-clustering difference testing: valid inference and practical considerations Benjamin Hivert,Denis Agniel,Rodolphe Thiébaut,Boris P. Hejblum Computational Statistics and Data Analysis, 2024, 193, pp.107916. ⟨10.1016/j.csda.2023.107916⟩ Article dans une revue hal-03889565v1
Association between humoral serological markers levels and risk of SARS-CoV-2 infection after the primary COVID-19 vaccine course among ANRS0001S COV-POPART cohort participants Mathieu Chalouni,Paul Loubet,Edouard Lhomme,Laetitia Ninove,Benoit Barrouet al. BMC Infectious Diseases, 2024, 24 (1), pp.1049. ⟨10.1186/s12879-024-09861-5⟩ Article dans une revue hal-04724620v1
Evaluation of waning of IgG antibody responses after rVSVΔG-ZEBOV-GP and Ad26.ZEBOV, MVA-BN-Filo Ebola virus disease vaccines: a modelling study from the PREVAC randomized trial Simon Valayer,Marie Alexandre,Mélanie Prague,Abdoul Habib Beavogui,Seydou Doumbiaet al. Emerging microbes & infections, 2024, Online ahead of print. ⟨10.1080/22221751.2024.2432353⟩ Article dans une revue hal-04817450v1
Estimating the population effectiveness of interventions against COVID-19 in France: A modelling study Iris Ganser,David L Buckeridge,Jane Heffernan,Mélanie Prague,Rodolphe Thiébaut Epidemics, 2024, 46, pp.100744. ⟨10.1016/j.epidem.2024.100744⟩ Article dans une revue hal-04505758v1
Redefining pandemic preparedness: Multidisciplinary insights from the CERP modelling workshop in infectious diseases, workshop report Marta Nunes,Edward Thommes,Holger Fröhlich,Antoine Flahault,Julien Arinoet al. Infectious Disease Modelling, 2024, 9 (2), pp.501-518. ⟨10.1016/j.idm.2024.02.008⟩ Article dans une revue hal-04551033v1
ChatGPT et au-delà avec l’intelligence artificielle en santé : des leçons à tirer Rodolphe Thiébaut,Boris P. Hejblum,Fleur Mougin,Christophe Tzourio,Laura Richert Revue du Rhumatisme, 2024, 91 (1), pp.12-15. ⟨10.1016/j.rhum.2023.07.007⟩ Article dans une revue hal-04466670v1
Definition of Virological Endpoints Improving the Design of HIV Cure Strategies Using Analytical Antiretroviral Treatment Interruption Marie Alexandre,Mélanie Prague,Edouard Lhomme,Jean-Daniel Lelièvre,Linda Wittkopet al. Clinical Infectious Diseases, 2024, 79 (6), pp.1447-1457. ⟨10.1093/cid/ciae235⟩ Article dans une revue hal-04843977v1
A vaccine targeting antigen-presenting cells through CD40 induces protective immunity against Nipah disease Yadira Pastor,Olivier Reynard,Mathieu Iampietro,Mathieu Surenaud,Florence Picardet al. Cell Reports Medicine, 2024, 5 (3), pp.101467. ⟨10.1016/j.xcrm.2024.101467⟩ Article dans une revue hal-04569963v1
Neglecting normalization impact in semi-synthetic RNA-seq data simulation generates artificial false positives Boris Hejblum,Kalidou Ba,Rodolphe Thiébaut,Denis Agniel Genome Biology, 2024, 25 (1), pp.281. ⟨10.1101/2022.05.10.490529⟩ Article dans une revue hal-03908246v1
Clonal succession after prolonged antiretroviral therapy rejuvenates CD8&lt;sup&gt;+&lt;/sup&gt; T cell responses against HIV-1 Eoghann White,Laura Papagno,Assia Samri,Kenji Sugata,Boris P. Hejblumet al. Nature Immunology, 2024, 25 (9), pp.1555-1564. ⟨10.1038/s41590-024-01931-9⟩ Article dans une revue hal-04703528v1
Safety and immunogenicity of CD40.HIVRI.Env, a dendritic cell-based HIV vaccine, in healthy HIV-uninfected adults: a first-in-human randomized, placebo-controlled, dose-escalation study (ANRS VRI06) Yves Lévy,Yves Lévy,Christiane Moog,Christiane Moog,Aurélie Wiedemannet al. EClinicalMedicine, 2024, 77 (8), pp.102845. ⟨10.1016/j.eclinm.2024.102845⟩ Article dans une revue hal-04832417v1
On the Choice of Longitudinal Models for the Analysis of Antitumor Efficacy in Mouse Clinical Trials of Patient-derived Xenograft Models Hélène Savel,Sandrine Barbier,Cécile Proust-Lima,Virginie Rondeau,Rodolphe Thiébautet al. Cancer Research Communications, 2023, 3 (1), pp.140-147. ⟨10.1158/2767-9764.CRC-22-0238⟩ Article dans une revue hal-04403048v1
Impact of non-pharmaceutical interventions, weather, vaccination, and variants on COVID-19 transmission across departments in France Juliette Paireau,Marie-Laure Charpignon,Sophie Larrieu,Clémentine Calba,Nathanaël Hozéet al. BMC Infectious Diseases, 2023, 23 (190), ⟨10.1186/s12879-023-08106-1⟩ Article dans une revue hal-03791761v2
Parameter estimation in nonlinear mixed effect models based on ordinary differential equations: An optimal control approach Quentin Clairon,Chloé Pasin,Irene Balelli,Rodolphe Thiébaut,Mélanie Prague Computational Statistics, 2023 Article dans une revue hal-03335826v2
Doubly-robust evaluation of high-dimensional surrogate markers Denis Agniel,Boris Hejblum,Rodolphe Thiébaut,Layla Parast Biostatistics, 2023, 24 (4), pp.985-999. ⟨10.1093/biostatistics/kxac020⟩ Article dans une revue hal-03100499v1
ChatGPT and beyond with artificial intelligence (AI) in health: Lessons to be learned. Rodolphe Thiebaut,Boris P. Hejblum,Fleur Mougin,Christophe Tzourio,Laura Richert Joint Bone Spine, 2023, 90 (5), pp.105607. ⟨10.1016/j.jbspin.2023.105607⟩ Article dans une revue hal-04236822v1
Neutrophil Activation and Immune Thrombosis Profiles Persist in Convalescent COVID-19 Hakim Hocini,Aurélie Wiedemann,Fabiola Blengio,Cécile Lefebvre,Minerva Cervantes-Gonzalezet al. Journal of Clinical Immunology, 2023, 43 (5), pp.882-893. ⟨10.1007/s10875-023-01459-x⟩ Article dans une revue hal-04373844v1
Safety and immunogenicity of the two-dose heterologous Ad26.ZEBOV and MVA-BN-Filo Ebola vaccine regimen in infants: a phase 2, randomised, double-blind, active-controlled trial in Guinea and Sierra Leone Edward Man-Lik Choi,Boris Lacarra,Muhammed O Afolabi,Boni Maxime Ale,Frank Baidenet al. The Lancet global health, 2023, 11 (11), pp.e1743-e1752. ⟨10.1016/S2214-109X(23)00410-2⟩ Article dans une revue hal-04384862v1
Using Population Based Kalman Estimator to Model COVID-19 Epidemic in France: Estimating the Effects of Non-Pharmaceutical Interventions on the Dynamics of Epidemic Annabelle Collin,Boris P. Hejblum,Carole Vignals,Laurent Lehot,Rodolphe Thiébautet al. The international journal of biostatistics, In press, ⟨10.1515/ijb-2022-0087⟩ Article dans une revue hal-04151651v1
Assessment of circulating blood lymphocytes in adult patients on rituximab to treat immune thrombocytopenia: Circulating number of NK cells is associated with the response at 6 months. Etienne Rivière,Rodolphe Thiébaut,Estibaliz Lazaro,Alexandre Guy,Chloé Jameset al. British Journal of Haematology, In press, ⟨10.1111/bjh.18818⟩ Article dans une revue hal-04095049v1
Development and external validation of a prediction model for the transition from mild to moderate or severe form of COVID-19 Maéva Zysman,Julien Asselineau,Olivier Saut,Eric Frison,Mathilde Orangeret al. European Radiology, 2023, 33 (12), pp.9262-9274. ⟨10.1007/s00330-023-09759-x⟩ Article dans une revue hal-04153209v1
Prediction of long-term humoral response induced by the two-dose heterologous Ad26.ZEBOV, MVA-BN-Filo vaccine against Ebola Marie Alexandre,Mélanie Prague,Chelsea Mclean,Viki Bockstal,Macaya Douoguihet al. NPJ vaccines, 2023, 8 (174), ⟨10.1038/s41541-023-00767-y⟩ Article dans une revue hal-04226696v2
Identification of early gene expression profiles associated with long-lasting antibody responses to the Ebola vaccine Ad26.ZEBOV/MVA-BN-Filo Fabiola Blengio,Hakim Hocini,Laura Richert,Cécile Lefebvre,Melany Durandet al. Cell Reports, 2023, 42 (9), pp.113101. ⟨10.1016/j.celrep.2023.113101⟩ Article dans une revue hal-04273901v1
Modeling the evolution of the neutralizing antibody response against SARS-CoV-2 variants after several administrations of Bnt162b2 Quentin Clairon,Mélanie Prague,Delphine Planas,Timothée Bruel,Laurent Hocquelouxet al. PLoS Computational Biology, 2023, 19 (8), pp.e1011282. ⟨10.1371/journal.pcbi.1011282⟩ Article dans une revue hal-03946556v1
Evaluating the Use of Generalized Dynamic Weighted Ordinary Least Squares for Individualized Hiv Treatment Strategies Larry Dong,Erica E. M. Moodie,Laura Villain,Rodolphe Thiébaut Annals of Applied Statistics, 2023, 17 (3), pp.2432-2451. ⟨10.1214/22-aoas1726⟩ Article dans une revue hal-04344321v1
Global Variations in Event-Based Surveillance for Disease Outbreak Detection: Time Series Analysis Iris Ganser,Rodolphe Thiébaut,David Buckeridge JMIR Public Health and Surveillance, 2022, 8 (10), pp.e36211. ⟨10.2196/36211⟩ Article dans une revue hal-03919665v1
Inhaled ciclesonide for outpatient treatment of COVID-19 in adults at risk of adverse outcomes: a randomised controlled trial (COVERAGE) Alexandre Duvignaud,Edouard Lhomme,Racha Onaisi,Rémi Sitta,Ambre Gelleyet al. Clinical Microbiology and Infection, 2022, 28 (7), pp.1010-1016. ⟨10.1016/j.cmi.2022.02.031⟩ Article dans une revue hal-03690132v1
Modelling the response to vaccine in non-human primates to define SARS-CoV-2 mechanistic correlates of protection Marie Alexandre,Romain Marlin,Mélanie Prague,Séverin Coleon,Nidhal Kahlaouiet al. eLife, 2022, 11, pp.e75427. ⟨10.7554/eLife.75427⟩ Article dans une revue hal-03482728v2
Design, immunogenicity, and efficacy of a pan-sarbecovirus dendritic-cell targeting vaccine Séverin Coléon,Aurélie Wiedemann,Mathieu Surénaud,Christine Lacabaratz,Sophie Hueet al. EBioMedicine, 2022, 80, pp.104062. ⟨10.1016/j.ebiom.2022.104062⟩ Article dans une revue hal-03692817v1
The respiratory microbiota alpha-diversity in chronic lung diseases: first systematic review and meta-analysis Marta Avalos,Clémence Métayer,Thibaud Alin,Rodolphe Thiébaut,Raphaël Enaudet al. Respiratory Research, 2022, 23 (214), ⟨10.1186/s12931-022-02132-4⟩ Article dans une revue hal-03762542v1
Enriching single-arm clinical trials with external controls: possibilities and pitfalls Jérôme Lambert,Etienne Lengliné,Raphaël Porcher,Rodolphe Thiébaut,Sarah Zoharet al. Blood Advances, In press, ⟨10.1182/bloodadvances.2022009167⟩ Article dans une revue hal-03914596v1
Safety and immunogenicity of 2-dose heterologous Ad26.ZEBOV, MVA-BN-Filo Ebola vaccination in children and adolescents in Africa: A randomised, placebo-controlled, multicentre Phase II clinical trial Zacchaeus Anywaine,Houreratou Barry,Omu Anzala,Gaudensia Mutua,Sodiomon Sirimaet al. PLoS Medicine, 2022, 19 (1), pp.e1003865. ⟨10.1371/journal.pmed.1003865⟩ Article dans une revue hal-03690128v1
mTOR Inhibitors Prevent CMV Infection through the Restoration of Functional αβ and γδ T cells in Kidney Transplantation Hannah Kaminski,Gabriel Marseres,Nathalie Yared,Marie-Julie Nokin,Vincent Pitardet al. Journal of the American Society of Nephrology, 2022, 33 (1), pp.121-137. ⟨10.1681/ASN.2020121753⟩ Article dans une revue (article de synthèse) hal-05400910v1
NK Cell Subset Redistribution and Antibody Dependent Activation after Ebola Vaccination in Africans Helen R Wagstaffe,Omu Anzala,Hannah Kibuuka,Zacchaeus Anywaine,Sodiomon B Sirimaet al. Vaccines, 2022, 10 (6), pp.884. ⟨10.3390/vaccines10060884⟩ Article dans une revue hal-04418906v1
Data-Driven Sparse Partial Least Squares Hadrien Lorenzo,Olivier Cloarec,Rodolphe Thiébaut,Jérôme Saracco Statistical Analysis and Data Mining, 2022, 15 (2), pp.264-282. ⟨10.1002/sam.11558⟩ Article dans une revue hal-03368956v1
Within-host models of SARS-CoV-2: What can it teach us on the biological factors driving virus pathogenesis and transmission? Mélanie Prague,Marie Alexandre,Rodolphe Thiébaut,Jérémie Guedj Anaesthesia Critical Care & Pain Medicine, 2022, 41 (2), pp.101055. ⟨10.1016/j.accpm.2022.101055⟩ Article dans une revue hal-03691907v1
Incidence of cytomegalovirus infection in seropositive kidney transplant recipients treated with everolimus: A randomized, open‐label, multicenter phase 4 trial Hannah Kaminski,Nassim Kamar,Olivier Thaunat,Nicolas Bouvier,Sophie Caillardet al. American Journal of Transplantation, 2022, ⟨10.1111/ajt.16946⟩ Article dans une revue hal-03605036v1
High temporal resolution transcriptomic profiling delineates distinct patterns of interferon response following Covid-19 mRNA vaccination and SARS-CoV2 infection Darawan Rinchai,Sara Deola,Gabriele Zoppoli,Basirudeen Syed Ahamed Kabeer,Sara Talebet al. Science Advances , 2022, 8 (45), eabp9961. ⟨10.1126/sciadv.abp9961⟩ Article dans une revue hal-03530948v1
The benefit of augmenting open data with clinical data-warehouse EHR for forecasting SARS-CoV-2 hospitalizations in Bordeaux area, France Thomas Ferté,Vianney Jouhet,Romain Griffier,Boris P Hejblum,Rodolphe Thiébautet al. JAMIA open, 2022, 5 (4), ⟨10.1093/jamiaopen/ooac086⟩ Article dans une revue hal-03908260v1
T Cell Immunogenicity, Gene Expression Profile, and Safety of Four Heterologous Prime-Boost Combinations of HIV Vaccine Candidates in Healthy Volunteers: Results of the Randomized Multi-Arm Phase I/II ANRS VRI01 Trial Laura Richert,Jean-Daniel Lelievre,Christine Lacabaratz,Lucile Hardel,Hakim Hociniet al. Journal of Immunology, 2022, 208 (12), pp.2663-2674. ⟨10.4049/jimmunol.2101076⟩ Article dans une revue hal-03690137v1
Methodological guidelines to estimate population-based health indicators using linked data and/or machine learning techniques Romana Haneef,Mariken Tijhuis,Rodolphe Thiébaut,Ondřej Májek,Ivan Pristašet al. Archives of Public Health, 2022, 80 (9), pp.9. ⟨10.1186/s13690-021-00770-6⟩ Article dans une revue hal-03692820v1
Influence of the antiretrovitral regimen on the early changes in plasma HIV RNA and immune activation at initiation of antiretroviral therapy in naïve HIV-1-infected patients Assia Samri,Mathieu Chalouni,Julià Blanco,Georg Behrens,Peter Kelleheret al. Journal of Acquired Immune Deficiency Syndromes - JAIDS, 2021, 86 (5), pp.e146-e149. ⟨10.1097/QAI.0000000000002594⟩ Article dans une revue hal-03142789v1
CD177, a specific marker of neutrophil activation, is associated with coronavirus disease 2019 severity and death Yves Lévy,Aurélie Wiedemann,Boris P. Hejblum,Mélany Durand,Cécile Lefebvreet al. iScience, 2021, 24 (7), pp.102711. ⟨10.1016/j.isci.2021.102711⟩ Article dans une revue hal-03477973v1
Targeting SARS-CoV-2 receptor-binding domain to cells expressing CD40 improves protection to infection in convalescent macaques Romain Marlin,Veronique Godot,Sylvain Cardinaud,Mathilde Galhaut,Severin Coleonet al. Nature Communications, 2021, 12, pp.5215. ⟨10.1038/s41467-021-25382-0⟩ Article dans une revue hal-03481526v1
Between group comparison of AUC in clinical trials with censored follow-up: Application to HIV therapeutic vaccines Marie Alexandre,Mélanie Prague,Rodolphe Thiébaut Statistical Methods in Medical Research, 2021, ⟨10.1177/09622802211023963⟩ Article dans une revue hal-03241637v2
EpidemiOptim: a Toolbox for the Optimization of Control Policies in Epidemiological Models Cédric Colas,Boris P. Hejblum,Sébastien Rouillon,Rodolphe Thiébaut,Pierre-Yves Oudeyeret al. Journal of Artificial Intelligence Research, 2021, 71, pp.479-515. ⟨10.1613/jair.1.12588⟩ Article dans une revue hal-03099898v2
A Conceptual Discussion about R0 of SARS-COV-2 in Healthcare Settings Laura Temime,Marie-Paule Gustin,Audrey Duval,Niccolò Buetti,Pascal Crepeyet al. Clinical Infectious Diseases, 2021, pp.ciaa682. ⟨10.1093/cid/ciaa682⟩ Article dans une revue hal-02859847v1
Barrier Gesture Relaxation during Vaccination Campaign in France: Modelling Impact of Waning Immunity Carole Vignals,David W Dick,Rodolphe Thiébaut,Linda Wittkop,Mélanie Pragueet al. COVID, 2021, 1 (2), pp.472-488. ⟨10.3390/covid1020041⟩ Article dans une revue hal-03375281v1
Correction to: Evolution of body composition following successful kidney transplantation is strongly influenced by physical activity: results of the CORPOS study Karine Moreau,Aurélie Desseix,Christine Germain,Pierre Merville,Lionel Couziet al. BMC Nephrology, 2021, 22 (1), ⟨10.1186/s12882-021-02258-5⟩ Article dans une revue hal-03186351v1
A randomized placebo-controlled efficacy study of a prime boost therapeutic vaccination strategy in HIV-1 infected individuals: VRI02 ANRS 149 LIGHT Phase II trial Y. Levy,C. Lacabaratz,Edouard Lhomme,A. Wiedemann,Claire Bauduinet al. Journal of Virology, In press, ⟨10.1128/jvi.02165-20⟩ Article dans une revue hal-03188939v1
Partnership for Research on Ebola VACcination (PREVAC): protocol of a randomized, double-blind, placebo-controlled phase 2 clinical trial evaluating three vaccine strategies against Ebola in healthy volunteers in four West African countries Moses Badio,Edouard Lhomme,Mark Kieh,Abdoul Habib Beavogui,Stephen Kennedyet al. Trials, 2021, 22 (1), pp.86. ⟨10.1186/s13063-021-05035-9⟩ Article dans une revue hal-03526667v1
New Insights in Microbial Species Predicting Lung Function Decline in CF: Lessons from the MucoFong Project Florence Francis,Raphael Enaud,Perrine Soret,Florian Lussac-Sorton,Marta Avaloset al. Journal of Clinical Medicine, 2021, 10 (16), pp.3725. ⟨10.3390/jcm10163725⟩ Article dans une revue hal-03328143v1
Evolution of body composition following successful kidney transplantation is strongly influenced by physical activity: results of the CORPOS study Karine Moreau,Aurélie Desseix,Christine Germain,Pierre Merville,Lionel Couziet al. BMC Nephrology, 2021, 22 (1), pp.31. ⟨10.1186/s12882-020-02214-9⟩ Article dans une revue hal-03142794v1
Random forests for high-dimensional longitudinal data Louis Capitaine,Robin Genuer,Rodolphe Thiébaut Statistical Methods in Medical Research, 2021, 30 (1), pp.166-184. ⟨10.1177/0962280220946080⟩ Article dans une revue hal-03481508v1
Health Care Students’ Knowledge of and Attitudes, Beliefs, and Practices Toward the French COVID-19 App: Cross-sectional Questionnaire Study Ilaria Montagni,Nicolas Roussel,Rodolphe Thiébaut,Christophe Tzourio Journal of Medical Internet Research, 2021, 23 (3), pp.e26399. ⟨10.2196/26399⟩ Article dans une revue hal-03189015v1
Safety and immunogenicity of 2-dose heterologous Ad26.ZEBOV, MVA-BN-Filo Ebola vaccination in healthy and HIV-infected adults: A randomised, placebo-controlled Phase II clinical trial in Africa Houreratou Barry,Gaudensia Mutua,Hannah Kibuuka,Zacchaeus Anywaine,Sodiomon Sirimaet al. PLoS Medicine, 2021, 18 (10), pp.e1003813. ⟨10.1371/journal.pmed.1003813⟩ Article dans une revue hal-03481531v1
mTOR Inhibitors Prevent CMV Infection through the Restoration of Functional αβ and γδ T cells in Kidney Transplantation Hannah Kaminski,Gabriel Marseres,Nathalie Yared,Marie-Julie Nokin,Vincent Pitardet al. Journal of the American Society of Nephrology, In press, pp.121-137. ⟨10.1681/ASN.2020121753⟩ Article dans une revue hal-03451674v1
ESO Guideline on covert cerebral small vessel disease Joanna M. Wardlaw,Stephanie Debette,Hanna Jokinen,Frank-Erik de Leeuw,Leonardo Pantoniet al. European Stroke Journal, 2021, ⟨10.1177/23969873211012132⟩ Article dans une revue hal-03282826v1
The impact of clopidogrel on plasma-soluble CD40 ligand levels in systemic lupus erythematosus patients: the CLOPUS phase I/II pilot study Guillaume Vial,Noémie Gensous,Hélène Savel,Christophe Richez,Estibaliz Lazaroet al. Joint Bone Spine, 2021, 88 (2), pp.105097. ⟨10.1016/j.jbspin.2020.105097⟩ Article dans une revue hal-03142764v1
Durable natural killer cell responses after heterologous two-dose Ebola vaccination Helen R. Wagstaffe,Giada Susannini,Rodolphe Thiébaut,Laura Richert,Yves Lévyet al. NPJ vaccines, 2021, 6 (1), pp.19. ⟨10.1038/s41541-021-00280-0⟩ Article dans une revue hal-03158135v1
A machine learning approach for predicting suicidal thoughts and behaviours among college students Melissa Macalli,Marie Navarro,Massimiliano Orri,Marie Tournier,Rodolphe Thiebautet al. Scientific Reports, 2021, 11 (1), pp.11363. ⟨10.1038/s41598-021-90728-z⟩ Article dans une revue hal-03323054v1
Development of a fixed module repertoire for the analysis and interpretation of blood transcriptome data Matthew C Altman,Darawan Rinchai,Nicole Baldwin,Mohammed Toufiq,Elizabeth Whalenet al. Nature Communications, 2021, 12 (1), ⟨10.1038/s41467-021-24584-w⟩ Article dans une revue hal-03481522v1
Comment la modélisation peut-elle aider au développement des vaccins ? Rodolphe Thiébaut,Joanna Jongwane Interstices, 2020 Article dans une revue hal-02929092v1
Optimal priming of poxvirus vector (NYVAC)-based HIV vaccine regimens for T cell responses requires three DNA injections. Results of the randomized multicentre EV03/ANRS VAC20 Phase I/II Trial Yves Lévy,Christine Lacabaratz,Kim Ellefsen-Lavoie,Wolfgang Stöhr,Jean-Daniel Lelièvreet al. PLoS Pathogens, 2020, 16 (6), pp.e1008522. ⟨10.1371/journal.ppat.1008522⟩ Article dans une revue hal-03142733v1
Conventional Dendritic Cells and Slan + Monocytes During HIV-2 Infection Marco Iannetta,Stéphane Isnard,Jennifer Manuzak,Jean-Baptiste Guillerme,Mathilde Notinet al. Frontiers in Immunology, 2020, 1, pp.1658. ⟨10.3389/fimmu.2020.01658⟩ Article dans une revue hal-02944641v1
Long-lasting severe immune dysfunction in Ebola virus disease survivors Aurélie Wiedemann,Emile Foucat,Hakim Hocini,Cécile Lefebvre,Boris Hejblumet al. Nature Communications, 2020, 11 (1), pp.3730. ⟨10.1038/s41467-020-17489-7⟩ Article dans une revue hal-03160838v2
A model for establishment, maintenance and reactivation of the immune response after vaccination against Ebola virus Irene Balelli,Chloé Pasin,Mélanie Prague,Fabien Crauste,Thierry van Effelterreet al. Journal of Theoretical Biology, 2020, 495, pp.110254. ⟨10.1016/j.jtbi.2020.110254⟩ Article dans une revue hal-03160892v2
The impact of clopidogrel on plasma-soluble CD40 ligand levels in systemic lupus erythematosus patients: the CLOPUS phase I/II pilot study Guillaume Vial,Noémie Gensous,Hélène Savel,Christophe Richez,Estibaliz Lazaroet al. Joint Bone Spine, 2020, 88 (2), pp.105097. ⟨10.1016/j.jbspin.2020.105097⟩ Article dans une revue hal-03160699v1
Safety and immunogenicity of a two-dose heterologous Ad26.ZEBOV and MVA-BN-Filo Ebola vaccine regimen in adults in Europe (EBOVAC2): a randomised, observer-blind, participant-blind, placebo-controlled, phase 2 trial Andrew Pollard,Odile Launay,Jean-Daniel Lelievre,Christine Lacabaratz,Sophie Grandeet al. The Lancet Infectious Diseases, 2020, ⟨10.1016/S1473-3099(20)30476-X⟩ Article dans une revue hal-03142752v1
A Comparison of Cell Activation, Exhaustion, and Expression of HIV Coreceptors and Restriction Factors in HIV-1- and HIV-2-Infected Nonprogressors Mariama Sadjo Diallo,Assia Samri,Charlotte Charpentier,Mélanie Bertine,Rémi Cheynieret al. AIDS Research and Human Retroviruses, In press, 37 (3), pp.214-223. ⟨10.1089/AID.2020.0084⟩ Article dans une revue hal-03090206v1
Correlation between blood telomere length and CD4+ CD8+ T-cell subsets changes 96 weeks after initiation of antiretroviral therapy in HIV-1-positive individuals Mathieu Chalouni,Javier Rodriguez-Centeno,Assia Samri,Julian Blanco,Natalia Stella-Ascarizet al. PLoS ONE, 2020, 15 (4), 9 p Article dans une revue hal-03160741v1
Correlation between blood telomere length and CD4+ CD8+ T-cell subsets changes 96 weeks after initiation of antiretroviral therapy in HIV-1–positive individuals Mathieu Chalouni,Javier Rodriguez-Centeno,Assia Samri,Julian Blanco,Natalia Stella-Ascarizet al. PLoS ONE, 2020, 15 (4), pp.e0230772. ⟨10.1371/journal.pone.0230772⟩ Article dans une revue inserm-02543732v1
Respiratory mycobiome and suggestion of inter-kingdom network during acute pulmonary exacerbation in cystic fibrosis Perrine Soret,Louise-Eva Vandenborght,Florence Francis,Noémie Coron,Raphaël Enaudet al. Scientific Reports, 2020, 10 (1), pp.3589. ⟨10.1038/s41598-020-60015-4⟩ Article dans une revue inserm-02497484v1
Prospective Evaluation of the First Option, Second-Line Therapy in Childhood Chronic Immune Thrombocytopenia: Splenectomy or Immunomodulation Stéphane Ducassou,Helder Fernandes,Hélène Savel,Yves Bertrand,Thierry Leblancet al. The Journal of Pediatrics, 2020, 231, pp.223-230. ⟨10.1016/j.jpeds.2020.12.018⟩ Article dans une revue hal-03481515v1
Home Treatment of Older People with Symptomatic SARS-CoV-2 Infection (COVID-19): A structured Summary of a Study Protocol for a Multi-Arm Multi-Stage (MAMS) Randomized Trial to Evaluate the Efficacy and Tolerability of Several Experimental Treatments to Reduce the Risk of Hospitalisation or Death in outpatients aged 65 years or older (COVERAGE trial) Alexandre Duvignaud,Edouard Lhomme,Thierry Pistone,Racha Onaisi,Rémi Sittaet al. Trials, 2020, 21 (1), ⟨10.1186/s13063-020-04619-1⟩ Article dans une revue hal-03142773v1
Immune Alterations in a Patient with SARS-CoV-2-Related Acute Respiratory Distress Syndrome Lila Bouadma,Aurélie Wiedemann,Juliette Patrier,Mathieu Surénaud,Paul-Henri Wickyet al. Journal of Clinical Immunology, 2020, 40, pp.1082-1092. ⟨10.1007/s10875-020-00839-x⟩ Article dans une revue hal-03160737v2
Analyzing cellular immunogenicity in vaccine clinical trials: a new statistical method including non-specific responses for accurate estimation of vaccine effect Édouard Lhomme,Boris Hejblum,Christine Lacabaratz,Aurélie Wiedemann,Jean-Daniel Lelièvreet al. Journal of Immunological Methods, 2020, 477, pp.112711. ⟨10.1016/j.jim.2019.112711⟩ Article dans une revue hal-03161945v2
PRIMVAC vaccine adjuvanted with Alhydrogel or GLA-SE to prevent placental malaria: a first-in-human, randomised, double-blind, placebo-controlled study Sodiomon B Sirima,Laura Richert,Arnaud Chêne,Amadou T Konate,Cécilia Campionet al. The Lancet Infectious Diseases, 2020, 20 (5), pp.585-597. ⟨10.1016/S1473-3099(19)30739-X⟩ Article dans une revue hal-03161802v2
dearseq: a variance component score test for RNA-Seq differential analysis that effectively controls the false discovery rate Marine Gauthier,Denis Agniel,Rodolphe Thiébaut,Boris Hejblum NAR Genomics and Bioinformatics, 2020, 2 (4), pp.lqaa093. ⟨10.1093/nargab/lqaa093⟩ Article dans une revue hal-02138664v1
Prospective Evaluation of the First Option, Second-Line Therapy in Childhood Chronic Immune Thrombocytopenia: Splenectomy or Immunomodulation Stéphane Ducassou,Helder Fernandes,Hélène Savel,Yves Bertrand,Thierry Leblancet al. The Journal of Pediatrics, 2020, ⟨10.1016/j.jpeds.2020.12.018⟩ Article dans une revue hal-03142779v1
Exogenous acquisition of Pseudomonas aeruginosa in intensive care units: a prospective multi-centre study (DYNAPYO study) Maider Coppry,Camille Leroyer,Marion Saly,Anne Gaëlle Venier,Celine Slekovecet al. Journal of Hospital Infection, 2020, 104 (1), pp.40-45. ⟨10.1016/j.jhin.2019.08.008⟩ Article dans une revue hal-03161089v2
Public Health and Epidemiology Informatics: Recent Research Trends Moving toward Public Health Data Science Sébastien Cossin,Rodolphe Thiébaut IMIA Yearbook of Medical Informatics, 2020, 29 (1), pp.231-234. ⟨10.1055/s-0040-1702020⟩ Article dans une revue hal-03116855v1
Effects of a physical activity programme to prevent physical performance decline in onco-geriatric patients: a randomized multicentre trial Haritz Arrieta,Cyril Astrugue,Sophie C Regueme,Jessica Durrieu,Aline Maillardet al. Journal of Cachexia, Sarcopenia and Muscle, 2019, 10 (2), pp.287-297. ⟨10.1002/jcsm.12382⟩ Article dans une revue hal-03160734v1
Viral rebound in semen after antiretroviral treatment interruption in an HIV therapeutic vaccine double-blind trial Romain Palich,Jade Ghosn,Antoine Chaillon,Valerie Boilet,Marie-Laure Nereet al. AIDS. Official journal of the international AIDS Society, 2019, 33 (2), pp.279-284. ⟨10.1097/qad.0000000000002058⟩ Article dans une revue hal-03161003v1
Temporal trends of population viral suppression in the context of Universal Test and Treat: the ANRS 12249 TasP trial in rural South Africa Joseph Larmarange,Mamadou Diallo,Nuala Mcgrath,Collins Iwuji,Mélanie Plazyet al. Journal of the International AIDS Society, 2019, 22 (10), ⟨10.1002/jia2.25402⟩ Article dans une revue hal-03161847v3
New insights are game-changers in HIV-2 disease management Quentin Le Hingrat,Charlotte Charpentier,Jade Ghosn,Rodolphe Thiébaut,Gilles Peytavinet al. The Lancet HIV, 2019, 6 (4), pp.e214. ⟨10.1016/s2352-3018(19)30088-8⟩ Article dans une revue hal-03160755v1
Sequential Dirichlet Process Mixtures of Multivariate Skew t-distributions for Model-based Clustering of Flow Cytometry Data Boris P. Hejblum,Chariff Alkhassim,Raphael Gottardo,François Caron,Rodolphe Thiébaut Annals of Applied Statistics, 2019, 13 (1), pp.638-660. ⟨10.1214/18-AOAS1209⟩ Article dans une revue hal-01579063v1
Artificial Intelligence for Surveillance in Public Health Rodolphe Thiébaut,Sebastien Cossin IMIA Yearbook of Medical Informatics, 2019, 28 (1), pp.232-234. ⟨10.1055/s-0039-1677939⟩ Article dans une revue hal-03161020v1
Multi-arm, multi-stage randomised controlled trials for evaluating therapeutic HIV cure interventions Cecilia Moore,Wolfgang Stohr,Laura Richert,Jean-Daniel Lelievre,Angela Crooket al. The Lancet HIV, 2019, 6 (5), pp.e334-e340. ⟨10.1016/s2352-3018(19)30082-7⟩ Article dans une revue hal-02426904v2
Sequential Dirichlet process mixture of skew $t$-distributions for model-based clustering of flow cytometry data Boris P. Hejblum,Chariff Alkhassim,Raphael Gottardo,François Caron,Rodolphe Thiébaut Annals of Applied Statistics, 2019, 13 (1), pp.638-660 Article dans une revue hal-03161057v1
Microbial Translocation Does Not Drive Immune Activation in Ugandan Children Infected With HIV Felicity Fitzgerald,Edouard Lhomme,Kathryn Harris,Julia Kenny,Ronan Doyleet al. Journal of Infectious Diseases, 2019, 219 (1), pp.89-100. ⟨10.1093/infdis/jiy495⟩ Article dans une revue hal-03160724v2
Dynamics of the humoral immune response to a prime-boost Ebola vaccine: quantification and sources of variation Chloé Pasin,Irene Balelli,Thierry van Effelterre,Viki Bockstal,Laura Solforosiet al. Journal of Virology, 2019, 93 (18), pp.e00579-19. ⟨10.1128/jvi.00579-19⟩ Article dans une revue hal-02280792v2
Innate gene signature distinguishes humoral versus cytotoxic responses to influenza vaccination Elena Gonçalves,Olivia Bonduelle,Angèle Soria,Pierre Loulergue,Alexandra Rousseauet al. The Journal of clinical investigation, 2019, 129 (5), pp.1960-1971. ⟨10.1172/jci125372⟩ Article dans une revue hal-03160706v1
Determinants of Restoration of CD4 and CD8 Cell Counts and Their Ratio in HIV-1-Positive Individuals With Sustained Virological Suppression on Antiretroviral Therapy Luuk Gras,Margaret May,Lars Peter Ryder,Adam Trickey,Marie Helleberget al. Journal of Acquired Immune Deficiency Syndromes - JAIDS, 2019, 80 (3), pp.292-300. ⟨10.1097/QAI.0000000000001913⟩ Article dans une revue hal-03161868v2
Gene Expression Signatures Associated With Immune and Virological Responses to Therapeutic Vaccination With Dendritic Cells in HIV-Infected Individuals Rodolphe Thiébaut,Boris P. Hejblum,Hakim Hocini,Henri Bonnabau,Jason Skinneret al. Frontiers in Immunology, 2019, 10, ⟨10.3389/fimmu.2019.00874⟩ Article dans une revue hal-02267014v2
Limited HIV-2 reservoirs in central-memory CD4 T-cells associated to CXCR6 co-receptor expression in attenuated HIV-2 infection Assia Samri,Charlotte Charpentier,Mariama Sadjo Diallo,Mélanie Bertine,Sophie Evenet al. PLoS Pathogens, 2019, 15 (5), pp.e1007758. ⟨10.1371/journal.ppat.1007758⟩ Article dans une revue hal-03160709v2
HIV Controllers Have Low Inflammation Associated with a Strong HIV-Specific Immune Response in Blood Hakim Hocini,Henri Bonnabau,Christine Lacabaratz,Cécile Lefebvre,Pascaline Tisserandet al. Journal of Virology, 2019, 93 (10), pp.e01690-18. ⟨10.1128/JVI.01690-18⟩ Article dans une revue pasteur-02549956v1
Controlling IL-7 injections in HIV-infected patients Chloé Pasin,François Dufour,Laura Villain,Huilong Zhang,Rodolphe Thiébaut Bulletin of Mathematical Biology, 2018, ⟨10.1007/s11538-018-0465-8⟩ Article dans une revue hal-03063888v2
Visualizing omics and clinical data: which challenges for dealing with their variety? Fleur Mougin,David Auber,Romain Bourqui,Gayo Diallo,Isabelle Dutouret al. Methods, 2018, 132, pp.3-18. ⟨10.1016/j.ymeth.2017.08.012⟩ Article dans une revue istex hal-03160796v2
HIV-1 T cell epitopes targeted to Rhesus macaque CD40 and DCIR: A comparative study of prototype dendritic cell targeting therapeutic vaccine candidates Anne-Laure Flamar,Henri Bonnabau,Sandra Zurawski,Christine Lacabaratz,Monica Monteset al. PLoS ONE, 2018, 13 (11), pp.e0207794. ⟨10.1371/journal.pone.0207794⟩ Article dans une revue hal-03160760v1
A Phase Ia/B Study To Assess The Safety And Immunogenicity Of Placental Malaria Vaccine Candidate: Preliminary Results Of The Primalvac Trial Amadou Konate,Laura Richert,Arnaud Chene,Jean-Philippe Semblat,Gwenaelle Roguetet al. American Journal of Tropical Medicine and Hygiene, 2018, 99 (4), pp.469-469. ⟨10.1136/bmjgh-2019-EDC.35⟩ Article dans une revue hal-03019490v1
Lasso regularization for left-censored Gaussian outcome and high-dimensional predictors Perrine Soret,Marta Fernandez Avalos,Linda Wittkop,Daniel Commenges,Rodolphe Thiébaut BMC Medical Research Methodology, 2018, 18, pp.13. ⟨10.1186/s12874-018-0609-4⟩ Article dans une revue hal-03160825v2
Sparse partial least squares with group and subgroup structure Matthew Sutton,Rodolphe Thiébaut,Benoit Liquet Statistics in Medicine, 2018, 37 (23), pp.3338--3356 Article dans une revue hal-02134605v1
Ebola vaccine development: Systematic review of pre-clinical and clinical studies, and meta-analysis of determinants of antibody response variability after vaccination Lise Gross,Édouard Lhomme,Chloé Pasin,Laura Richert,Rodolphe Thiébaut International Journal of Infectious Diseases, 2018, 74, pp.83-96. ⟨10.1016/j.ijid.2018.06.022⟩ Article dans une revue hal-01888913v1
The impact of population dynamics on the population HIV care cascade: results from the ANRS 12249 Treatment as Prevention trial in rural KwaZulu-Natal (South Africa) Joseph Larmarange,Hassimiou Mamadou Diallo,Nuala Mcgrath,Collins Iwuji,Melanie Plazyet al. Journal of the International AIDS Society, 2018, Population mobility: challenges for universal HIV testing and treatment, 21 (Suppl 4), pp.e25128. ⟨10.1002/jia2.25128⟩ Article dans une revue hal-03160878v1
Prevention of Ebola virus disease through vaccination: where we are in 2018 Yves Levy,Clifford Lane,Peter Piot,Abdul Habib Beavogui,Mark Kiehet al. The Lancet, 2018, 392 (10149), pp.787-790. ⟨10.1016/S0140-6736(18)31710-0⟩ Article dans une revue hal-03160681v1
Universal test and treat and the HIV epidemic in rural South Africa: a phase 4, open-label, community cluster randomised trial Collins C. Iwuji,Joanna Orne-Gliemann,Joseph Larmarange,Eric Balestre,Rodolphe Thiébautet al. The Lancet HIV, 2018, 5 (3), pp.e116-e125. ⟨10.1016/s2352-3018(17)30205-9⟩ Article dans une revue hal-03161049v1
Risk factors for colonization and infection by Pseudomonas aeruginosa in patients hospitalized in intensive care units in France S. Hoang,A. Georget,J. Asselineau,Anne-Gaëlle Venier,Camille Leroyeret al. PLoS ONE, In press, 13 (3), pp.e0193300. ⟨10.1371/journal.pone.0193300⟩ Article dans une revue hal-03008120v1
A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets Aarón Ayllón-Benítez,Fleur Mougin,Julien Allali,Rodolphe Thiébaut,Patricia Thebault PLoS ONE, 2018, 13 (11), pp.e0208037. ⟨10.1371/journal.pone.0208037⟩ Article dans une revue hal-01938961v1
cytometree: A binary tree algorithm for automatic gating in cytometry analysis Daniel Commenges,Chariff Alkhassim,Raphael Gottardo,Boris P. Hejblum,Rodolphe Thiébaut Cytometry Part A, 2018, 93 (11), pp.1132-1140. ⟨10.1002/cyto.a.23601⟩ Article dans une revue hal-03161874v2
T-cell and Transcriptomic Responses to Prime-boost Strategies of 3 HIV Vaccines(MVA HIV-B; LIPO-5; GTU-MultiHIV B)-ANRS/INSERM VRI01 Trial Laura Richert,Aurelie Wiedemann,Odile Launay,Frederic Lucht,Isabelle Poizot-Martinet al. AIDS Research and Human Retroviruses, 2018, pp.16-16 Article dans une revue hal-03160938v1
Artificial Intelligence in Public Health and Epidemiology Rodolphe Thiébaut,Frantz Thiessard IMIA Yearbook of Medical Informatics, 2018, 27 (1), pp.207-210. ⟨10.1055/s-0038-1667082⟩ Article dans une revue hal-03160811v1
Prenatal therapy with pyrimethamine + sulfadiazine vs spiramycin to reduce placental transmission of toxoplasmosis: a multicenter, randomized trial Laurent Mandelbrot,Francois Kieffer,Rémi Sitta,Hélène Laurichesse-Delmas,Norbert Wineret al. American Journal of Obstetrics and Gynecology, 2018, 219 (4), pp.386.e1-386.e9. ⟨10.1016/j.ajog.2018.05.031⟩ Article dans une revue istex hal-01987714v1
Adaptive protocols based on predictions from a mechanistic model of the effect of IL7 on CD4 counts Laura Villain,Daniel Commenges,Chloé Pasin,Mélanie Prague,Rodolphe Thiébaut Statistics in Medicine, 2018, 38 (2), pp.221-235. ⟨10.1002/sim.7957⟩ Article dans une revue hal-03161958v2
Serum ST2 level is an independent predictor of all-cause mortality in HIV-infected patients. Aquitaine Cohort, France Rodolphe Thiebaut,Sophie Hue,Fabien Le Marec,Jean-Daniel Lelievre,Michel Duponet al. AIDS. Official journal of the international AIDS Society, 2017 Article dans une revue hal-01671081v1
Integrative Analysis of Immunological Data to Explore Chronic Immune T-Cell Activation in Successfully Treated HIV Patients Marie-Quitterie Picat,Isabelle Pellegrin,Juliette Bitard,Linda Wittkop,Cécile Proust-Limaet al. PLoS ONE, 2017, 12 (1), pp.e0169164. ⟨10.1371/journal.pone.0169164⟩ Article dans une revue hal-01579159v1
No compensatory lung growth after resection in a one-year follow-up cohort of patients with lung cancer Stéphane Glénet,Claire De Bisschop,Frédéric Delcambre,Rodolphe Thiébaut,Laurent Francoiset al. Journal of Thoracic Disease, 2017, 9 (10), pp.3938-3945. ⟨10.21037/jtd.2017.08.135⟩ Article dans une revue hal-03010145v1
Systems Vaccinology Identifies an Early Innate Immune Signature as a Correlate of Antibody Responses to the Ebola Vaccine rVSV-ZEBOV Anne Rechtien,Laura Richert,Hadrien Lorenzo,Gloria Martrus,Boris P. Hejblumet al. Cell Reports, 2017, 20 (9), pp.2251 - 2261. ⟨10.1016/j.celrep.2017.08.023⟩ Article dans une revue hal-01579246v1
Public Health and Epidemiology Informatics Rodolphe Thiebaut,Frantz Thiessard IMIA Yearbook of Medical Informatics, 2017, ⟨10.15265/IY-2017-035⟩ Article dans une revue hal-01671095v1
Reference curves for CD4 T-cell count response to combination antiretroviral therapy in HIV-1-infected treatment-naïve patients Vincent Bouteloup,Caroline Sabin,Amanda Mocroft,Luuk Gras,Nikos Pantaziset al. HIV Medicine, 2017, 18 (1), pp.33 - 44. ⟨10.1111/hiv.12389⟩ Article dans une revue hal-01579158v1
CD4 Cell Count Response to First-Line Combination ART in HIV-2+ Patients Compared with HIV-1+ Patients: A Multinational, Multicohort European Study Linda Wittkop,Julie Arsandaux,Ana Trevino,Maarten Schim van der Loeff,Jane Andersonet al. Journal of Antimicrobial Chemotherapy, 2017, 72 (10), pp.2869--2878. ⟨10.1093/jac/dkx210⟩ Article dans une revue hal-03704080v1
Dynamic models for estimating the effect of HAART on CD4 in observational studies: Application to the Aquitaine Cohort and the Swiss HIV Cohort Study Mélanie Prague,Daniel Commenges,Jon Michael Gran,Bruno Ledergerber,Jim Younget al. Biometrics, 2017, 73 (1), pp.294 - 304. ⟨10.1111/biom.12564⟩ Article dans une revue hal-01406614v2
Modeling CD4 + T cells dynamics in HIV-infected patients receiving repeated cycles of exogenous Interleukin 7 Ana Jarne,Daniel Commenges,Mélanie Prague,Yves Levy,Rodolphe Thiébaut Annals of Applied Statistics, 2017 Article dans une revue hal-01579008v1
Serum suppression of tumorigenicity 2 level is an independent predictor of all-cause mortality in HIV-infected patients Rodolphe Thiebaut,Sophie Hue,Fabien Le Marec,Jean-Daniel Lelievre,Michel Duponet al. AIDS. Official journal of the international AIDS Society, 2017, 31 (17), pp.2355 - 2365. ⟨10.1097/QAD.0000000000001628⟩ Article dans une revue hal-01666072v1
Superior Efficacy of a Human Immunodeficiency Virus Vaccine Combined with Antiretroviral Prevention in Simian-Human Immunodeficiency Virus-Challenged Nonhuman Primates Roger Le Grand,Nathalie Dereuddre-Bosquet,Stefania Dispinseri,Leslie Gosse,Delphine Desjardinset al. Journal of Virology, 2016, 90 (11), pp.5315 - 5328 Article dans une revue hal-01406364v1
Targeting HIV-1 Env gp140 to LOX-1 Elicits Immune Responses in Rhesus Macaques Gerard Zurawski,Sandra Zurawski,Anne-Laure Flamar,Laura Richert,Ralf Wagneret al. PLoS ONE, 2016, 11 (4), ⟨10.1371/journal.pone.0153484⟩ Article dans une revue hal-01389087v1
Low CD4/CD8 Ratio Is Associated with Non AIDS-Defining Cancers in Patients on Antiretroviral Therapy: ANRS CO8 (Aproco/Copilote) Prospective Cohort Study Mariam Noelie Hema,Tristan Ferry,Michel Dupon,Lise Cuzin,Renaud Verdonet al. PLoS ONE, 2016, 11 (8), pp.e0161594. ⟨10.1371/journal.pone.0161594⟩ Article dans une revue hal-01406618v1
Repeated Cycles of Recombinant Human Interleukin 7 in HIV-Infected Patients With Low CD4 T-Cell Reconstitution on Antiretroviral Therapy: Results of 2 Phase II Multicenter Studies Rodolphe Thiébaut,Ana Jarne,Jean-Pierre Routy,Irini Sereti,Margaret Fischlet al. Clinical Infectious Diseases, 2016, 62 (9), pp.1178 - 1185. ⟨10.1093/cid/ciw065⟩ Article dans une revue hal-01406362v1
No Positive Association between Vitamin D Level and Immune Responses to Hepatitis B and Streptococcus pneumoniae Vaccination in HIV-Infected Adults Jean-Paul Viard,Alex Assuied,Yves Lévy,Jean-Claude Souberbielle,Rodolphe Thiébautet al. PLoS ONE, 2016, 11 (12), pp.e0168640. ⟨10.1371/journal.pone.0168640⟩ Article dans une revue hal-01449359v1
Immunologic response in treatment-naïve HIV-2-infected patients: the IeDEA West Africa cohort Eric Balestre,Didier Koumavi Ekouevi,Boris Tchounga,Serge Paul Eholie,Eugène Messouet al. Journal of the International AIDS Society, 2016, 19 (1), pp.20044. ⟨10.7448/IAS.19.1.20044⟩ Article dans une revue hal-01288896v1
Superior efficacy of an HIV vaccine combined with ARV prevention in SHIV challenged non-human primates Roger Le Grand,Nathalie Bosquet,Stefania Dispinseri,Leslie Gosse,Delphine Desjardinset al. Journal of Virology, 2016, ⟨10.1128/JVI.00230-16⟩ Article dans une revue hal-01579552v1
Early CD4+ T Cell Responses Are Associated with Subsequent CD8+ T Cell Responses to an rAd5-Based Prophylactic Prime-Boost HIV Vaccine Strategy Edouard Lhomme,Laura Richert,Zoe Moodie,Chloé Pasin,Spyros A. Kalamset al. PLoS ONE, 2016, 11 (4) Article dans une revue hal-01406611v1
Intrinsic Defect in Keratinocyte Function Leads to Inflammation in Hidradenitis Suppurativa Claire Hotz,Michele Boniotto,Aurélie Guguin,Mathieu Surénaud,Francette Jean-Louiset al. Journal of Investigative Dermatology, 2016, 136 (9), pp.1768 - 1780 Article dans une revue hal-01406612v1
A method to estimate the size and characteristics of HIV-positive populations using an individual-based stochastic simulation model Fumiyo Nakagawa,Ard van Sighem,Rodolphe Thiébaut,Colette Smith,Oliver Ratmannet al. Epidemiology, 2016, 27 (2), pp.247-256. ⟨10.1097/EDE.0000000000000423⟩ Article dans une revue hal-01288889v1
Preservation of Lymphopoietic Potential and Virus Suppressive Capacity by CD8+ T Cells in HIV-2-Infected Controllers. Mathieu Angin,Glenn Wong,Laura Papagno,Pierre Versmisse,Annie Davidet al. Journal of Immunology, 2016, 197 (7), pp.2787-95. ⟨10.4049/jimmunol.1600693⟩ Article dans une revue hal-01406621v1
Uptake of Home-Based HIV Testing, Linkage to Care, and Community Attitudes about ART in Rural KwaZulu-Natal, South Africa: Descriptive Results from the First Phase of the ANRS 12249 TasP Cluster-Randomised Trial Collins C. Iwuji,Joanna Orne-Gliemann,Joseph Larmarange,Nonhlanhla Okesola,Frank Tanseret al. PLoS Medicine, 2016, 13 (8), ⟨10.1371/journal.pmed.1002107⟩ Article dans une revue hal-01406616v1
Group and sparse group partial least square approaches applied in genomics context Benoit Liquet,Pierre Lafaye de Micheaux,Boris P. Hejblum,Rodolphe Thiébaut Bioinformatics, 2016, 32 (1), pp.35-42. ⟨10.1093/bioinformatics/btv535⟩ Article dans une revue hal-01288891v1
Dose finding with longitudinal data: simpler models, richer outcomes Xavier Paoletti,Adélaïde Doussau,Monia Ezzalfani,Elisa Rizzo,Rodolphe Thiébaut Statistics in Medicine, 2015, 34 (22), ⟨10.1002/sim.6552⟩ Article dans une revue istex hal-01288874v1
Optimization and evaluation of Luminex performance with supernatants of antigen-stimulated peripheral blood mononuclear cells Mathieu Surénaud,Céline Manier,Laura Richert,Rodolphe Thiébaut,Yves Levyet al. BMC Immunology, 2015, 17 (1), pp.44. ⟨10.1186/s12865-016-0182-8⟩ Article dans une revue inserm-01395760v1
Recent developments in clinical trial designs for HIV vaccine research. Laura Richert,Edouard Lhomme,Catherine Fagard,Yves Levy,Geneviève Chêneet al. Human Vaccines & Immunotherapeutics, 2015, 11 (4), pp.1022--9. ⟨10.1080/21645515.2015.1011974⟩ Article dans une revue hal-01164644v1
Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA). Anita Burgun,Dina V Oksen,Wolfgang Kuchinke,Hans-Ulrich Prokosch,Thomas Ganslandtet al. Studies in Health Technology and Informatics, 2015, 216, pp.1005. ⟨10.3233/978-1-61499-564-7-1005⟩ Article dans une revue hal-01232643v1
A new approach to integrate toxicity grade and repeated treatment cycles in the analysis and reporting of phase I dose-finding trials Adélaide Doussau,Rodolphe Thiebaut,B. Geoerger,Patrick Schoffski,Anne Floquetet al. Annals of Oncology, 2015, 26 (2), pp.422-428. ⟨10.1093/annonc/mdu523⟩ Article dans une revue hal-01288869v1
Guidelines for reporting methodological challenges and evaluating potential bias in dementia research Jennifer Weuve,Cécile Proust-Lima,Melinda C. Power,Alden L. Gross,Scott M. Hoferet al. Alzheimer's & Dementia : the Journal of the Alzheimer's Association, 2015, 11 (9), pp.1098-1109. ⟨10.1016/j.jalz.2015.06.1885⟩ Article dans une revue hal-01288885v1
CD41 T cell recovery during suppression of HIV replication: an international comparison of the immunological efficacy of antiretroviral therapy in North America, Asia and Africa. Elvin H Geng,Torsten B Neilands,Rodolphe Thièbaut,Mwebesa Bosco Bwana,Denis Nashet al. International Journal of Epidemiology, 2015, 44 (1), pp.251-63 Article dans une revue hal-01288872v1
Association of immune-activation and senescence markers with non-AIDS-defining comorbidities in HIV-suppressed patients Pierre Duffau,Linda Wittkop,Estibaliz Lazaro,Fabien Le Marec,Céline Cognetet al. AIDS. Official journal of the international AIDS Society, 2015, 29 (16), pp.2099-2108. ⟨10.1097/QAD.0000000000000807⟩ Article dans une revue hal-01288887v1
Decreased HIV-Specific T-Regulatory Responses Are Associated with Effective DC-Vaccine Induced Immunity Vedran Brezar,Nicolas Ruffin,Laura Richert,Mathieu Surénaud,Christine Lacabaratzet al. PLoS Pathogens, 2015, 11 (3), pp.e1004752. ⟨10.1371/journal.ppat.1004752⟩ Article dans une revue hal-01288864v1
Parameters identification for a model of T cell homeostasis Houssein Ayoub,Bedreddine Ainseba,Michel Langlais,Rodolphe Thiébaut Mathematical Biosciences and Engineering, 2015, 12 (5), pp.917--936. ⟨10.3934/mbe.2015.12.917⟩ Article dans une revue hal-01164668v1
Early initiation of combined antiretroviral therapy preserves immune function in the gut of HIV-infected patients Ayrin Kök,Laurent Hocqueloux,Hakim Hocini,Marie Carrière,Laurent Lefrouet al. Mucosal Immunology, 2015, 8 (1), pp.127-140. ⟨10.1038/mi.2014.50⟩ Article dans une revue hal-01288851v1
Diabetes and cognitive decline in a French cohort of patients infected with HIV-1 Carole Dufouil,Laura Richert,Rodolphe Thiébaut,Mathias Bruyand,Hélène Amievaet al. Neurology, 2015, 85 (12), pp.1065-1073. ⟨10.1212/WNL.0000000000001815⟩ Article dans une revue hal-01288876v1
Time-Course Gene Set Analysis for Longitudinal Gene Expression Data Boris P. Hejblum,Jason Skinner,Rodolphe Thiébaut PLoS Computational Biology, 2015, 11 (6), pp.e1004310. ⟨10.1371/journal.pcbi.1004310⟩ Article dans une revue hal-01203446v1
Surveillance of γδ T Cells Predicts Cytomegalovirus Infection Resolution in Kidney Transplants. Hannah Kaminski,Isabelle Garrigue,Lionel Couzi,Benjamin Taton,Thomas Bacheletet al. Journal of the American Society of Nephrology, 2015, 27 (2), pp.637-645. ⟨10.1681/ASN.2014100985⟩ Article dans une revue hal-01164667v1
Accelerating clinical development of HIV vaccine strategies: methodological challenges and considerations in constructing an optimised multi-arm phase I/II trial design. Laura Richert,Adélaïde Doussau,Jean-Daniel Lelièvre,Vincent Arnold,Véronique Rieuxet al. Trials, 2014, 15 (1), pp.68. ⟨10.1186/1745-6215-15-68⟩ Article dans une revue inserm-00955157v1
L’analyse des « Big Data » en recherche clinique Rodolphe Thiébaut,Boris P. Hejblum,Laura Richert Epidemiology and Public Health = Revue d'Epidémiologie et de Santé Publique, 2014, 62 (1), pp.1-4. ⟨10.1016/j.respe.2013.12.021⟩ Article dans une revue inserm-00933691v1
Systems analysis of sex differences reveals an immunosuppressive role for testosterone in the response to influenza vaccination. David Furman,Boris P. Hejblum,Noah Simon,Vladimir Jojic,Cornelia L. Dekkeret al. Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (2), pp.869-74. ⟨10.1073/pnas.1321060111⟩ Article dans une revue inserm-00933693v1
T-cell activation discriminates subclasses of symptomatic primary humoral immunodeficiency diseases in adults. Marie-Quitterie Picat,Rodolphe Thiébaut,François Lifermann,Xavier Delbrel,Daniel Adoueet al. BMC Immunology, 2014, 15 (1), pp.13. ⟨10.1186/1471-2172-15-13⟩ Article dans une revue inserm-00981320v1
[Mathematical dynamical models for personalized medicine]. Rodolphe Thiébaut,Mélanie Prague,Daniel Commenges Médecine/Sciences, 2014, 30 Spec No 2, pp.23-6 Article dans une revue hal-01108013v1
Body composition in 98 patients awaiting kidney transplantation. Karine Moreau,Aurélie Desseix,Christine Germain,Nicole Barthe,Thomas Bacheletet al. Nutrition, 2014, 30 (2), pp.186-91 Article dans une revue hal-01108163v1
Temporal trends in prognostic markers of HIV-1 virulence and transmissibility: an observational cohort study Nikos Pantazis,Kholoud Porter,Dominique Costagliola,Andrea de Luca,Jade Ghosnet al. Lancet HIV, 2014, 1 (3), pp.e119 - e126. ⟨10.1016/S2352-3018(14)00002-2⟩ Article dans une revue hal-01579153v1
The Impact of the 2013 WHO Antiretroviral Therapy Guidelines on the Feasibility of HIV Population Prevention Trials Eric Ross,Frank Tanser,Pamela Pei,Marie-Louise Newell,Elena Losinaet al. HIV Clinical Trials, 2014, 15 (5), pp.185-98. ⟨10.1310/hct1505-185⟩ Article dans une revue hal-01108183v1
Reproducibility issues in science, is P value really the only answer? Jean Gaudart,Laetitia L. Huiart,P. J. Milligan,Rodolphe Thiebaut,Roch Giorgi Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (19), pp.e1934. ⟨10.1073/pnas.1323051111⟩ Article dans une revue hal-01307492v1
An Evaluation of HIV Elite Controller Definitions within a Large Seroconverter Cohort Collaboration Ashley D. Olson,Laurence Meyer,Maria Prins,Rodolphe Thiébaut,Deepti Gurdasaniet al. PLoS ONE, 2014, 9 (1), pp.e86719. ⟨10.1371/journal.pone.0086719⟩ Article dans une revue hal-01368387v1
Quantifying and Predicting the Effect of Exogenous Interleukin-7 on CD4+T Cells in HIV-1 Infection Rodolphe Thiébaut,Julia Drylewicz,Mélanie Prague,Christine Lacabaratz,Stéphanie Beqet al. PLoS Computational Biology, 2014, 10 (5), pp.e1003630. ⟨10.1371/journal.pcbi.1003630⟩ Article dans une revue hal-01108204v1
Dendritic cell-based therapeutic vaccine elicits polyfunctional HIV-specific T-cell immunity associated with control of viral load. Yves Lévy,Rodolphe Thiébaut,Monica Montes,Christine Lacabaratz,Louis Sloanet al. European Journal of Immunology, 2014, 44 (9), pp.2802-10. ⟨10.1002/eji.201344433⟩ Article dans une revue hal-01108024v1
NIMROD: a program for inference via a normal approximation of the posterior in models with random effects based on ordinary differential equations. Mélanie Prague,Daniel Commenges,Jérémie Guedj,Drylewicz Julia,Rodolphe Thiébaut Computer Methods and Programs in Biomedicine, 2013, 111 (2), pp.447-458. ⟨10.1016/j.cmpb.2013.04.014⟩ Article dans une revue istex hal-00933752v1
Is the current use of 'positivity' thresholds meaningful for evaluating HIV-vaccine immunogenicity endpoints? Laura Richert,Rodolphe Thiébaut AIDS. Official journal of the international AIDS Society, 2013, 27 (8), pp.1362-5. ⟨10.1097/QAD.0b013e328360d52e⟩ Article dans une revue inserm-00933696v1
Effect of cytomegalovirus-induced immune response, self antigen-induced immune response, and microbial translocation on chronic immune activation in successfully treated HIV type 1-infected patients: the ANRS CO3 Aquitaine Cohort. Linda Dr Wittkop,Juliette Bitard,Estibaliz Lazaro,Didier Neau,Fabrice Bonnetet al. Journal of Infectious Diseases, 2013, 207 (4), pp.622-7. ⟨10.1093/infdis/jis732⟩ Article dans une revue inserm-00936482v1
Cytokine and gene transcription profiles of immune responses elicited by HIV lipopeptide vaccine in HIV-negative volunteers. Laura Richert,Sophie Hue,Hakim Hocini,Mathieu Raimbault,Christine Lacabaratzet al. AIDS. Official journal of the international AIDS Society, 2013, 27 (9), pp.1421-31. ⟨10.1097/QAD.0b013e32835f5b60⟩ Article dans une revue hal-00948406v1
Dose-finding design using mixed-effect proportional odds model for longitudinal graded toxicity data in phase I oncology clinical trials. Adélaïde Doussau,Rodolphe Thiébaut,Xavier Paoletti Statistics in Medicine, 2013, 32 (30), pp.5430-47. ⟨10.1002/sim.5960⟩ Article dans une revue istex hal-00936325v1
Effect of cytomegalovirus-induced immune response, self antigen-induced immune response, and microbial translocation on chronic immune activation in successfully treated HIV type 1-infected patients: the ANRS CO3 Aquitaine Cohort. Linda Wittkop,Juliette Bitard,Estibaliz Lazaro,Didier Neau,Fabrice Bonnetet al. The Internet Journal of Infectious Diseases, 2013, 207, pp.622-7 Article dans une revue hal-01101196v1
Dynamical models of biomarkers and clinical progression for personalized medicine: the HIV context. Mélanie Prague,Daniel Commenges,Rodolphe Thiébaut Advanced Drug Delivery Reviews, 2013, 65 (7), pp.954-65. ⟨10.1016/j.addr.2013.04.004⟩ Article dans une revue istex inserm-00939450v1
NIMROD: a program for inference via a normal approximation of the posterior in models with random effects based on ordinary differential equations. Mélanie Prague,Daniel Commenges,Jérémie Guedj,Julia Drylewicz,Rodolphe Thiébaut Computer Methods and Programs in Biomedicine, 2013, 111 (2), pp.447-58. ⟨10.1016/j.cmpb.2013.04.014⟩ Article dans une revue istex inserm-00939447v1
Clonally diverse T cell homeostasis is maintained by a common program of cell-cycle control. Thea Hogan,Andrey Shuvaev,Daniel Commenges,Andrew Yates,Robin Callardet al. Journal of Immunology, 2013, 190 (8), pp.3985-93. ⟨10.4049/jimmunol.1203213⟩ Article dans une revue inserm-00939457v1
Treatment Monitoring of HIV Infected Patients based on Mechanistic Models Mélanie Prague,Daniel Commenges,Julia Drylewicz,Rodolphe Thiébaut Biometrics, 2012, 14, pp.171 - 911. ⟨10.1191/0962280205sm390oa⟩ Article dans une revue hal-01579531v1
Mean CD4 cell count changes in patients failing a first-line antiretroviral therapy in resource-limited settings. Alexandra Calmy,Eric Balestre,Fabrice Bonnet,Andrew Boulle,Eduardo Sprinzet al. BMC Infectious Diseases, 2012, 12 (1), pp.147. ⟨10.1186/1471-2334-12-147⟩ Article dans une revue inserm-00788673v1
A new method for integrated analysis applied to gene expression and cytokines secretion in response to LIPO-5 vaccine in HIV-negative volunteers Rodolphe Thiébaut,Benoit Liquet,Hakim Hocini,Sophie Hue,Laura Richertet al. Retrovirology, 2012, 9 (Suppl 2), pp.P121 Article dans une revue inserm-00731770v1
A novel approach for biomarker selection and the integration of repeated measures experiments from two assays. Benoit Liquet,Kim-Anh Lê Cao,Hakim Hocini,Rodolphe Thiébaut BMC Bioinformatics, 2012, 13 (1), pp.325. ⟨10.1186/1471-2105-13-325⟩ Article dans une revue inserm-00814235v1
Heterogeneity in outcomes of treated HIV-positive patients in Europe and North America: relation with patient and cohort characteristics. Margaret T May,Robert S Hogg,Amy C Justice,Bryan E Shepherd,Dominique Costagliolaet al. International Journal of Epidemiology, 2012, 41 (6), pp.1807-20. ⟨10.1093/ije/dys164⟩ Article dans une revue hal-00875138v1
Vaccination with dendritic cells loaded with HIV-1 lipopeptides elicits broad T cell immunity and control of viral load in HIV infected patients Yves Lévy,Rodolphe Thiébaut,Monica Montes,Christine Lacabaratz,Louis Sloanet al. Retrovirology, 2012, 9 (Suppl 2), pp.P328 Article dans une revue inserm-00731768v1
CMV plasma DNAemia and risk of cancer among HIV-infected patients: a case-control study nested in the ANRS CO3 Aquitaine Cohort, France, 2002-2007. Mathias Bruyand,Marie-Anne Vandenhende,Guillaume Marcel,Estibaliz Lazaro,Marie-Edith Lafonet al. Journal of Clinical Virology, 2011, 50 (2), pp.177-80. ⟨10.1016/j.jcv.2010.10.021⟩ Article dans une revue istex hal-00594705v1
Universal definition of loss to follow-up in HIV treatment programs: a statistical analysis of 111 facilities in Africa, Asia, and Latin America. Benjamin H. Chi,Constantin T. Yiannoutsos,Andrew O. Westfall,Jamie E. Newman,Jialun Zhouet al. PLoS Medicine, 2011, 8 (10), pp.e1001111. ⟨10.1371/journal.pmed.1001111⟩ Article dans une revue inserm-00702729v1
Quantification of the relative importance of CTL, B cell, NK cell, and target cell limitation in the control of primary SIV-infection. Marjet Elemans,Rodolphe Thiébaut,Amitinder Kaur,Becca Asquith PLoS Computational Biology, 2011, 7 (3), pp.e1001103. ⟨10.1371/journal.pcbi.1001103⟩ Article dans une revue inserm-00704808v1
Comparison of early CD4 T-cell count in HIV-1 seroconverters in Côte d'Ivoire and France: the ANRS PRIMO-CI and SEROCO cohorts. Charlotte Lewden,Rodolphe Thiébaut,Faroudy Boufassa,Ali Coulibaly,Karen Malatesteet al. Journal of Acquired Immune Deficiency Syndromes - JAIDS, 2010, 53 (2), pp.260-5. ⟨10.1097/QAI.0b013e3181b84260⟩ Article dans une revue inserm-00416572v1
Prevalence and factors associated with renal impairment in HIV-infected patients, ANRS C03 Aquitaine Cohort, France. E. Kossi Déti,Rodolphe Thiébaut,Fabrice Bonnet,Sylvie Lawson-Ayayi,Michel Duponet al. HIV Medicine, 2010, 11 (5), pp.308-17. ⟨10.1111/j.1468-1293.2009.00780.x⟩ Article dans une revue inserm-00411631v1
Evolution of 2-long terminal repeat (2-LTR) episomal HIV-1 DNA in raltegravir-treated patients and in in vitro infected cells. Sandrine Reigadas,Marie-Line Andréola,Linda Wittkop,Ophélie Cosnefroy,Guerric Anieset al. Journal of Antimicrobial Chemotherapy, 2010, 65 (3), pp.434-7. ⟨10.1093/jac/dkp473⟩ Article dans une revue hal-00522698v1
First-year lymphocyte T CD4+ response to antiretroviral therapy according to the HIV type in the IeDEA West Africa collaboration. Julia Drylewicz,Serge Eholie,Moussa Maiga,Djimon-Marcel Zannou,Papa-Salif Sowet al. AIDS. Official journal of the international AIDS Society, 2010, 24 (7), pp.1043-50 Article dans une revue inserm-00414621v1
Influence of mannose-binding lectin genotypes and serostatus in allo-SCT: analysis of 131 recipients and donors. Olaf-Werner Neth,Ulrike Bacher,Purnima Das,Tatjana Zabelina,Hartmut Kabischet al. Bone Marrow Transplantation, 2010, 45 (1), pp.13-9. ⟨10.1038/bmt.2009.90⟩ Article dans une revue inserm-00414612v1
A new endpoint definition improved clinical relevance and statistical power in a vaccine trial. Gaëlle Pédrono,Rodolphe Thiébaut,Ahmadou Alioum,Philippe Lesprit,Bernard Fritzellet al. Journal of Clinical Epidemiology, 2009, 62 (10), pp.1054-61. ⟨10.1016/j.jclinepi.2008.10.014⟩ Article dans une revue inserm-00339872v1
Non-AIDS-defining deaths and immunodeficiency in the era of combination antiretroviral therapy. Benoît Marin,Rodolphe Thiébaut,Heiner C. Bucher,Virginie Rondeau,Dominique Costagliolaet al. AIDS. Official journal of the international AIDS Society, 2009, 23 (13), pp.1743-53. ⟨10.1097/QAD.0b013e32832e9b78⟩ Article dans une revue inserm-00388946v1
Virological and immunological response in HIV-1-infected patients with multiple treatment failures receiving raltegravir and optimized background therapy, ANRS CO3 Aquitaine Cohort. Linda Wittkop,Dominique Breilh,Daniel Da-Silva,Pierre Duffau,Patrick Merciéet al. Journal of Antimicrobial Chemotherapy, 2009, 63 (6), pp.1251-5. ⟨10.1093/jac/dkp114⟩ Article dans une revue inserm-00372614v1
Enhanced T cell recovery in HIV-1-infected adults through IL-7 treatment. Yves Levy,Christine Lacabaratz,Laurence Weiss,Jean-Paul Viard,Cecile Goujardet al. Journal of Clinical Investigation, 2009, 119 (4), pp.997-1007. ⟨10.1172/JCI38052⟩ Article dans une revue inserm-00484803v1
Role of uncontrolled HIV RNA level and immunodeficiency in the occurrence of malignancy in HIV-infected patients during the combination antiretroviral therapy era: Agence Nationale de Recherche sur le Sida (ANRS) CO3 Aquitaine Cohort. Mathias Bruyand,Rodolphe Thiébaut,Sylvie Lawson-Ayayi,Pierre Joly,Annie-Jeanne Sascoet al. Clinical Infectious Diseases, 2009, 49 (7), pp.1109-16. ⟨10.1086/605594⟩ Article dans une revue inserm-00391182v1
Association of non-HDL cholesterol with subclinical atherosclerosis in HIV-positive patients. Stéphanie Badiou,Rodolphe Thiébaut,Valérie Aurillac-Lavignolle,Francois Dabis,Frédéric Laporteet al. Journal of Infection, 2008, 57 (1), pp.47-54. ⟨10.1016/j.jinf.2008.05.007⟩ Article dans une revue inserm-00280760v1
Comparison of viro-immunological marker changes between HIV-1 and HIV-2-infected patients in France. Julia Drylewicz,Sophie Matheron,Estibaliz Lazaro,Florence Damond,Fabrice Bonnetet al. AIDS. Official journal of the international AIDS Society, 2008, 22 (4), pp.457-68. ⟨10.1097/QAD.0b013e3282f4ddfc⟩ Article dans une revue inserm-00258131v1
Transmission of HIV-1 minority-resistant variants and response to first-line antiretroviral therapy. Olivia Peuchant,Rodolphe Thiébaut,Sophie Capdepont,Valerie Lavignolle-Aurillac,Didier Neauet al. AIDS. Official journal of the international AIDS Society, 2008, 22 (12), pp.1417-23. ⟨10.1097/QAD.0b013e3283034953⟩ Article dans une revue inserm-00270200v1
Antiretroviral therapy in pregnant women with advanced HIV disease and pregnancy outcomes in Abidjan, Côte d'Ivoire. Didier Koumavi Ekouevi,Patrick A. Coffie,Renaud Becquet,Besigin Tonwe-Gold,Apollinaire Horoet al. AIDS. Official journal of the international AIDS Society, 2008, 22 (14), pp.1815-20. ⟨10.1097/QAD.0b013e32830b8ab9⟩ Article dans une revue inserm-00285869v1
When it is better to estimate a slope with only one point. Thiebaut Rodolphe,Sarah Walker QJM, 2008, 101 (10), pp.821-4. ⟨10.1093/qjmed/hcn099⟩ Article dans une revue inserm-00336900v1
Reduced bone mineral density in HIV-infected patients: prevalence and associated factors. Charles Cazanave,Michel Dupon,Valérie Lavignolle-Aurillac,Nicole Barthe,Sylvie Lawson-Ayayiet al. AIDS. Official journal of the international AIDS Society, 2008, 22 (3), pp.395-402. ⟨10.1097/QAD.0b013e3282f423dd⟩ Article dans une revue inserm-00186715v1
Alternative methods to analyse the impact of HIV mutations on virological response to antiviral therapy. Linda Wittkop,Daniel Commenges,Isabelle Pellegrin,Dominique Breilh,Didier Neauet al. BMC Medical Research Methodology, 2008, 8 (1), pp.68. ⟨10.1186/1471-2288-8-68⟩ Article dans une revue inserm-00333577v1
Practical identifiability of HIV dynamics models. Jérémie Guedj,Rodolphe Thiébaut,Daniel Commenges Bulletin of Mathematical Biology, 2007, 69 (8), pp.2493-513. ⟨10.1007/s11538-007-9228-7⟩ Article dans une revue inserm-00204273v1
Prevalence of resistance to nevirapine in mothers and children after single-dose exposure to prevent vertical transmission of HIV-1: a meta-analysis. Elise Arrivé,Marie-Louise Newell,Didier K. Ekouevi,Marie-Laure Chaix,Rodolphe Thiébautet al. International Journal of Epidemiology, 2007, 36 (5), pp.1009-21. ⟨10.1093/ije/dym104⟩ Article dans une revue inserm-00187308v1
Effectiveness of prenatal treatment for congenital toxoplasmosis: a meta-analysis of individual patients' data Rodolphe Thiébaut,Sandy Leproust,Geneviève Chêne,Ruth Gilbert The Lancet, 2007, 369 (9556), pp.115-122 Article dans une revue hal-00143965v1
Robustness of the linear mixed model to misspecied error distribution Hélène Jacqmin-Gadda,Solenne Sibillot,Cécile Proust,Jean-Michel Molina,Rodolphe Thiébaut Computational Statistics and Data Analysis, 2007, 51 (10), pp.5142-5154. ⟨10.1016/j.csda.2006.05.021⟩ Article dans une revue inserm-00084214v1
Maximum likelihood estimation in dynamical models of HIV. Jérémie Guedj,Rodolphe Thiébaut,Daniel Commenges Biometrics, 2007, 63 (4), pp.1198-206. ⟨10.1111/j.1541-0420.2007.00812.x⟩ Article dans une revue inserm-00204269v1
Estimation of dynamical model parameters taking into account undetectable marker values. Rodolphe Thiébaut,Jérémie Guedj,Hélène Jacqmin-Gadda,Geneviève Chêne,Pascale Trimouletet al. BMC Medical Research Methodology, 2006, 6, pp.38. ⟨10.1186/1471-2288-6-38⟩ Article dans une revue inserm-00101223v1
Change in T-lymphocyte count after initiation of highly active antiretroviral therapy in HIV-infected patients with history of Mycobacterium avium complex infection. Estibaliz Lazaro,Gaelle Coureau,Jérémie Guedj,Patrick Blanco,Isabelle Pellegrinet al. Antiviral Therapy, 2006, 11 (3), pp.343-50 Article dans une revue hal-00143964v1
Immunological markers after long-term treatment interruption in chronically HIV-1 infected patients with CD4 cell count above 400 x 10(6) cells/l. Rodolphe Thiébaut,Isabelle Pellegrin,Geneviève Chêne,Jean François Viallard,Hervé Fleuryet al. AIDS. Official journal of the international AIDS Society, 2005, 19 (1), pp.53-61 Article dans une revue hal-00143966v1
Modélisation longitudinale de données incomplètes : exemple de la charge virale plasmatique du VIH Rodolphe Thiébaut,Hélène Jacqmin-Gadda Journal de la Société Française de Statistique, 2004, 145 (2), pp.33-47 Article dans une revue inserm-00149860v1
Modèles de sélection pour données longitudinales gaussiennes : application à l'étude du vieillissement cognitif Hélène Jacqmin-Gadda,Rodolphe Thiébaut Journal de la Société Française de Statistique, 2004, 145 (2), pp.19-32 Article dans une revue inserm-00262012v1
[Joint modeling of quantitative longitudinal data and censored survival time] Hélène Jacqmin-Gadda,Rodolphe Thiébaut,Jean-François Dartigues Epidemiology and Public Health = Revue d'Epidémiologie et de Santé Publique, 2004, 52 (6), pp.502-10 Article dans une revue inserm-00262018v1
Mixed models for longitudinal left-censored repeated measures. Rodolphe Thiébaut,Hélène Jacqmin-Gadda Computer Methods and Programs in Biomedicine, 2004, 74 (3), pp.255-60. ⟨10.1016/j.cmpb.2003.08.004⟩ Article dans une revue hal-00143962v1
Changes over calendar time in the risk of specific first AIDS-defining events following HIV seroconversion, adjusting for competing risks. Abdel Babiker,Janet Darbyshire,Patrizio Pezzotti,Kholoud Porter,Giovanni Rezzaet al. International Journal of Epidemiology, 2002, 31 (5), pp.951-8 Article dans une revue inserm-00263560v1
Bivariate linear mixed models using SAS proc MIXED. Rodolphe Thiébaut,Hélène Jacqmin-Gadda,Geneviève Chêne,Catherine Leport,Daniel Commenges Computer Methods and Programs in Biomedicine, 2002, 69 (3), pp.249-56 Article dans une revue hal-00143963v1
Weight loss and body mass index as predictors of HIV disease progression to AIDS in adults. Aquitaine cohort, France, 1985-1997. Denis Malvy,Rodolphe Thiébaut,Catherine Marimoutou,François Dabis,Groupe d'Épidémiologie Clinique Du Sida En Aquitaine Journal of the American College of Nutrition, 2001, 20 (6), pp.609-15 Article dans une revue inserm-00263470v1

Communication dans un congrès (24)

Innovative clinical trial approach for evaluating digital medical devices under European HTA fast-Track frameworks Moreno Ursino,Sandrine Boulet,Corinne Collignon,Florence Francis-Oliviero,Edouard Lhommeet al. ISCB 2025 - 46th Annual Conference of the International Society for Clinical Biostatistics, Aug 2025, Basel, Switzerland Communication dans un congrès hal-05364910v1
Narrative review on the clinical evaluation of AI-based digital medical devices from a methodological perspective Sandrine Boulet,Vincent Thévenet,Judith Abécassis,Corinne Collignon,Bruno Giraudeauet al. PEPR-SanteNum 2025 - Journées Annuelles du PEPR Santé Numérique, PEPR Santé Numérique, Oct 2025, Lille, France Communication dans un congrès hal-05364958v1
Reservoir Computing for Short High-Dimensional Time Series: an Application to SARS-CoV-2 Hospitalization Forecast Thomas Ferté,Dan Dutartre,Boris P. Hejblum,Romain Griffier,Vianney Jouhetet al. ICML'24: Proceedings of the 41st International Conference on Machine Learning, Jul 2024, Vienna, Austria. pp.13570--13591, ⟨10.5555/3692070⟩ Communication dans un congrès hal-04693930v1
Optimizing Reservoir Computing with Genetic Algorithm for High-Dimensional SARS-CoV-2 Hospitalization Forecasting: Impacts of Genetic Algorithm Hyperparameters on Feature Selection and Reservoir Computing Hyperparameter Tuning Thomas Ferté,Dan Dutartre,Boris P. Hejblum,Romain Griffier,Vianney Jouhetet al. EA 2024 - 16th International Conference Artificial Evolution, Pierrick Legrand, Oct 2024, Bordeaux, France Communication dans un congrès hal-04905975v1
Méthodes pour l'inférence post-clustering appliquées à l'expression génique Benjamin Hivert,Denis Agniel,Rodolphe Thiébaut,Boris P. Hejblum SFDS 2022 - Journées de Statistique de la SFdS, Jun 2022, Lyon, France Communication dans un congrès hal-03906534v1
Multiblock supervised analyses, should we really normalize blocks? Jérôme Saracco,Hadrien Lorenzo,Olivier Cloarec,Rodolphe Thiébaut 17th Scandinavian Symposium on Chemometrics (SSC17), Sep 2021, Aalborg, Denmark Communication dans un congrès hal-03842510v1
Inférence post-clustering pour l'identification des variables responsables de la séparation de paires de clusters Benjamin Hivert,Denis Agniel,Rodolphe Thiébaut,Boris Hejblum Journées nationales « Statistiques & Santé » 2021, Oct 2021, Virtuel, France Communication dans un congrès hal-03906520v1
Une PLS parcimonieuse entre Statistique et Apprentissage Jérôme Saracco,Hadrien Lorenzo,Olivier Cloarec,Rodolphe Thiébaut Journées de Statistique 2021 – Société Française de Statistique, Jun 2021, Nice, France Communication dans un congrès hal-03842522v1
Comparison of AUC in clinical trials with follow up censoring: Application to HIV therapeutic vaccines Marie Alexandre,Mélanie Prague,Yves Lévy,Thiebaut Rodolphe ISCB 2020 - 41th Annual Conference of the International Society for Clinical Biostatistics, Aug 2020, Krakow / Virtual, Poland Communication dans un congrès hal-03151377v1
High-Dimensional Multi-Block Analysis of Factors Associated with Thrombin Generation Potential Hadrien Lorenzo,Misbah Razzaq,Jacob Odeber,Pierre-Emmanuel Morange,Jérôme Saraccoet al. CBMS 2019 - 32nd IEEE International Symposium on Computer-Based Medical Systems (CBMS), Jun 2019, Cordoba, Spain. pp.453-458, ⟨10.1109/CBMS.2019.00094⟩ Communication dans un congrès hal-02429302v1
Une PLS multivoie parcimonieuse avec observations manquantes pour données hétérogènes Hadrien Lorenzo,Jérôme Saracco,Rodolphe Thiébaut Journées de Statistique 2018 - Société Française de Statistique, May 2018, EDF Lab Paris Saclay, France Communication dans un congrès hal-01963431v1
From individual care trajectories to HIV care cascade at population level in rural KwaZulu-Natal (South Africa): the impact of population dynamics Joseph Larmarange,Hassimiou Mamadou Diallo,Nuala Mcgrath,Collins Iwuji,Rodolphe Thiébautet al. Life History Research Society Conference, May 2018, Paris, France Communication dans un congrès ird-04088658v1
Multi-block high-dimensional lasso-penalized analysis with imputation of missing data applied to postgenomic data in an Ebola vaccine trial Hadrien Lorenzo,Rodolphe Thiébaut,Jérôme Saracco Annual workshop on Statistical Methods for Post Genomic Data - SMPGD 2018, Jan 2018, Montpellier, France Communication dans un congrès hal-01664610v1
Use of mathematical modeling for optimizing and adapting immunotherapy protocols in HIV-infected patients Chloé Pasin,Laura Villain,François Dufour,Daniel Commenges,Mélanie Pragueet al. Population Approach Group Europe, May 2018, Montreux, Switzerland Communication dans un congrès hal-01934340v1
Adaptive protocols based on predictions from a mechanistic model of the effect of IL7 on CD4 counts Laura Villain,Daniel Commenges,Mélanie Prague,Chloé Pasin,Rodolphe Thiébaut International Biometric Conference, Jul 2018, Bacelone, Spain Communication dans un congrès hal-01973877v1
High-dimensional compositional microbiota data: state-of-the-art of methods and software implementations Perrine Soret,Marta Fernandez Avalos,Soon Cheng,Rodolphe Thiebaut 2017 - GDR « Statistiques et santé », Oct 2017, Bordeaux, France Communication dans un congrès hal-01667295v1
Joint-state and parameters estimation using nudging and SEIK filters for HIV mechanistic models Mélanie Prague,Rodolphe Thiébaut,Philippe Moireau,Annabelle Collin Journée de la statistique francaise, Jun 2017, Avignon, France Communication dans un congrès hal-01579068v1
Linking health and administrative data for maternal, child and young adult health Anita Burgun,Dina V Oksen,Wolfgang Kuchinke,Hans-Ulrich Prokosch,Thomas Ganslandtet al. 9. European Public Health Conference, Nov 2016, Vienne, Austria. ⟨10.1093/eurpub/ckw168.038⟩ Communication dans un congrès hal-01861720v1
Lasso-type estimators for non-parametric mixed-effects models: application to high-dimensional data from a vaccine clinical trial for HIV Perrine Soret,Cristian Meza,Marta Fernandez Avalos,Karine Bertin,Rodolphe Thiébaut 3rd conference of the International Society for Non-Parametric Statistics (ISNPS), Jun 2016, Avignon, France Communication dans un congrès hal-01396378v1
The impact of universal test and treat on HIV incidence in a rural South African population: ANRS 12249 TasP trial, 2012-2016 Collins Iwuji,Joanna Orne-Gliemann,Eric Balestre,Joseph Larmarange,Rodolphe Thiébautet al. 21st International AIDS Conference (AIDS 2016), IAS, Jul 2016, Durban, South Africa Communication dans un congrès hal-04118928v1
Lasso pour données censurées à gauche : une comparaison par simulation d’algorithmes proposés dans la littérature Perrine Soret,Marta Fernandez Avalos,Linda Wittkop,Rodolphe Thiébaut,Daniel Commenges 47èmes Journées de la Statistique, SFdS, 2015, Lille, France Communication dans un congrès hal-01578293v1
Feasibility and acceptability of an antiretroviral treatment as prevention (TasP) intervention in rural South Africa: results from the ANRS 12249 TasP cluster-randomised trial Collins Iwuji,Joanna Orne-Gliemann,Frank Tanser,Rodolphe Thiébaut,Joseph Larmarangeet al. 20th International AIDS Conference, IAS, Jul 2014, Melbourne, Australia Communication dans un congrès hal-04118836v1
Prise en compte de la censure à gauche dans la modélisation de données de grande dimension Nastasia Fouret,Marta Avalos,Linda Wittkop,Rodolphe Thiebaut,Daniel Commenges 46e Journées de Statistique, Jun 2014, Rennes, France Communication dans un congrès hal-01099341v1
Test du score pour l'exploration de modèles complexes: Application à la modélisation dynamique du VIH. Julia Drylewicz,Daniel Commenges,Rodolphe Thiébaut 41èmes Journées de Statistique, SFdS, Bordeaux, 2009, Bordeaux, France, France Communication dans un congrès inria-00386586v1

Poster de conférence (8)

Narrative review on the clinical evaluation of AI-based digital medical devices from a methodological perspective Sandrine Boulet,Vincent Thévenet,Judith Abécassis,Corinne Collignon,Bruno Giraudeauet al. SbN 2025 - 10th Statistics & Biopharmacy Conference, Oct 2025, Paris, France Poster de conférence hal-05364943v1
Narrative review on the clinical evaluation of AI-based digital medical devices from a methodological perspective Sandrine Boulet,Vincent Thévenet,Judith Abécassis,Corinne Collignon,Bruno Giraudeauet al. PEPR-SanteNum 2025 - Journées Annuelles du PEPR Santé Numérique, Oct 2025, Lille, France Poster de conférence hal-05347091v1
Innovative Clinical Trial Approach for Evaluating Digital Medical Devices under European Fast-Track Regulatory Frameworks Moreno Ursino,Sandrine Boulet,Corinne Collignon,Florence Francis-Oliviero,Edouard Lhommeet al. EPICLIN 2025 - Conférence francophone d’EPIdémiologie CLINique, May 2025, Bordeaux, France Poster de conférence hal-05085050v1
The respiratory microbiota alpha-diversity in chronic lung diseases: a systematic review and meta-analysis Marta Avalos,Thibaud Alin,Clémence Métayer,Rodolphe Thiébaut,Raphael Enaudet al. 32nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Apr 2022, Lisboa, Portugal. 2022 Poster de conférence hal-03877313v1
A simulation framework of high-dimensional phylogenetic microbiota data Perrine Soret,Marta Fernandez Avalos,Laurence Delhaes,Rodolphe Thiébaut 29th International Biometric Conference, Jul 2018, Barcelone, Spain Poster de conférence hal-01856324v1
Cascade of Care of HIV Seroconverters in the Context of Universal “Test and Treat” Joseph Larmarange,Hassimiou Diallo,Collins Iwuji,Joanna Orne-Gliemann,Nuala Mcgrathet al. CROI (Conference on Retroviruses and Opportunistic Infections), Feb 2017, Seattle, United States Poster de conférence ird-04109568v1
In Silico Evaluation of HIV Short-cycle Therapies with Dynamical Models Mélanie ´ Prague,Daniel Commenges,Rodolphe Thiébaut Keystone Symposium, Aug 2017, Este Park, United States Poster de conférence hal-01579070v1
High-dimensional longitudinal genomic data: a survey and evaluation of publicly available implementations of machine learning methods Perrine Soret,Marta Fernandez Avalos,Rodolphe Thiébaut Statistical Analysis of Massive Genomic Data, Nov 2015, Evry, France. , 2015 Poster de conférence hal-01253151v1

Pré-publication, Document de travail (12)

Adaptive Dirichlet Process mixture model with unknown concentration parameter and variance: Scaling high dimensional clustering via collapsed variational inference Annesh Pal,Aguirre Mimoun,Rodolphe Thiébaut,Boris P. Hejblum 2026 Pré-publication, Document de travail hal-05490235v1
Variational autoencoder for inference of nonlinear mixed effect models based on ordinary differential equations Zhe Li,Mélanie Prague,Rodolphe Thiébaut,Quentin Clairon 2026 Pré-publication, Document de travail hal-05472212v3
Representation Learning to Advance Multi-institutional Studies with Electronic Health Record Data Doudou Zhou,Han Tong,Linshanshan Wang,Suqi Liu,Xin Xionget al. 2025 Pré-publication, Document de travail hal-05222545v1
Epidemic Forecasting: Lessons Learned from the SARS-CoV-2 Pandemic to Balance Accuracy, Feasibility, and Impact Thomas Ferté,Vincent Thevenet,Xavier Hinaut,Pierrick Legrand,Dan Dutartreet al. 2025 Pré-publication, Document de travail hal-05392781v1
Comparative evaluation of methodologies for estimating the effectiveness of non-pharmaceutical interventions in the context of COVID-19: a simulation study Iris Ganser,Juliette Paireau,David L Buckeridge,Simon Cauchemez,Rodolphe Thiébautet al. 2024 Pré-publication, Document de travail hal-05073613v1
Practical limitations for real-life application of data fission and data thinning in post-clustering differential analysis Benjamin Hivert,Denis Agniel,Rodolphe Thiébaut,Boris P. Hejblum 2024 Pré-publication, Document de travail hal-04745517v1
Distribution-free complex hypothesis testing for single-cell RNA-seq differential expression analysis Marine Gauthier,Denis Agniel,Rodolphe Thiébaut,Boris P. Hejblum 2021 Pré-publication, Document de travail hal-03478097v1
Gene Set Analysis for time-to-event outcome with the Generalized Berk–Jones statistic Laura Villain,Thomas Ferté,Rodolphe Thiébaut,Boris P. Hejblum 2021 Pré-publication, Document de travail hal-03478102v1
Estimating R0 of SARS-COV-2 in healthcare settings Laura Temime,Marie-Paule Gustin,Audrey Duval,Niccolo Buetti,Pascal Crepeyet al. 2020 Pré-publication, Document de travail hal-02625428v1
Population modeling of early COVID-19 epidemic dynamics in French regions and estimation of the lockdown impact on infection rate Mélanie Prague,Linda Wittkop,Quentin Clairon,Dan Dutartre,Rodolphe Thiébautet al. 2020 Pré-publication, Document de travail hal-02555100v1
Random forests for high-dimensional longitudinal data Louis Capitaine,Robin Genuer,Rodolphe Thiébaut 2019 Pré-publication, Document de travail hal-02002979v1
HETEROGENEOUS VIRAL ENVIRONMENT IN A HIV SPATIAL MODEL Claude-Michel Brauner,Danaelle Jolly,Luca Lorenzi,Rodolphe Thiébaut 2009 Pré-publication, Document de travail hal-00383320v1

Thèse (1)

Modélisation longitudinales de marqueur du VIH Rodolphe Thiébaut Sciences du Vivant [q-bio]. Université Victor Segalen - Bordeaux II, 2002. Français. ⟨NNT : ⟩ Thèse tel-00121899v1