romain guyot Institut de recherche pour le développement France-Sud: Montpellier, Languedoc-Roussillon, FR2005-01-01 jusqu'à présent | Directeur de Recherche

Identifiants chercheurs

IdHAL :

romain-guyot

ORCID :

0000-0002-7016-7485

IdRef :

224213946

ResearcherID :

http://www.researcherid.com/rid/M-1118-2015

Publications

Article dans une revue (42)

The evolutionary history of three Baracoffea species from western Madagascar revealed by chloroplast and nuclear genomes Rickarlos Bezandry,Mathilde Dupeyron,Laura Natalia Gonzalez-Garcia,Artemis Anest,Perla Hamonet al. PLoS ONE, 2024, 19, ⟨10.1371/journal.pone.0296362⟩ Article dans une revue hal-04448243v1
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars J. Salojaervi,A. Rambani,Z. Yu,Romain Guyot,S. Strickleret al. Nature Genetics, 2024, 56 (4), pp.721-731. ⟨10.1038/s41588-024-01695-w⟩ Article dans une revue hal-04611385v1
How genomics can help biodiversity conservation Kathrin Theissinger,Carlos Fernandes,Giulio Formenti,Iliana Bista,Paul Berget al. Trends in Genetics, 2023, ⟨10.1016/j.tig.2023.01.005⟩ Article dans une revue hal-04082874v1
Efficient homology‐based annotation of transposable elements using minimizers Laura Natalia Gonzalez-García,Daniela Lozano-Arce,Juan Pablo Londoño,Romain Guyot,Jorge Duitama Applications in Plant Sciences, 2023, 11 (4), e11520 [11 p.]. ⟨10.1002/aps3.11520⟩ Article dans une revue hal-05252379v1
Bactris gasipaes Kunth var. gasipaes complete plastome and phylogenetic analysis Maria Camila Buitrago Acosta,Rommel Montúfar,Romain Guyot,Cédric Mariac,Timothy J. Tranbargeret al. Mitochondrial DNA Part B Resources, 2022, 7 (8), pp.1540-1544. ⟨10.1080/23802359.2022.2109437⟩ Article dans une revue ird-04119645v1
The era of reference genomes in conservation genomics Giulio Formenti,Kathrin Theissinger,Carlos Fernandes,Iliana Bista,Aureliano Bombarelyet al. Trends in Ecology & Evolution, 2022, 37 (3), pp.197-202. ⟨10.1016/j.tree.2021.11.008⟩ Article dans une revue hal-03854324v1
Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee) Jean-Claude Charr,Andrea Garavito,Christophe Guyeux,Dominique Crouzillat,Patrick Descombeset al. Molecular Phylogenetics and Evolution, 2020, 151, ⟨10.1016/j.ympev.2020.106906⟩ Article dans une revue hal-02934893v1
High-quality genome sequence of white lupin provides insight into soil exploration and seed quality Barbara Hufnagel,André Marques,Alexandre Soriano,Laurence Marquès,Fanchon Divolet al. Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩ Article dans une revue hal-02460008v1
WCSdb: a database of wild &lt;i&gt;Coffea&lt;/i&gt; species Romain Guyot,Perla Hamon,Emmanuel Couturon,Nathalie Raharimalala,Jean-Jacques Rakotomalalaet al. Database - The journal of Biological Databases and Curation, 2020, 2020, ⟨10.1093/database/baaa069⟩ Article dans une revue (data paper) hal-04182535v1
Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis Shuangyang Wu,Romain Guyot,Stéphanie Bocs,Gaëtan Droc,Fetrina Oktaviaet al. International Journal of Molecular Sciences, 2020, 21 (12), pp.4220. ⟨10.3390/ijms21124220⟩ Article dans une revue hal-02923368v1
Phenotypic diversity assessment wihin a major ex situ collection of coffees in Madagascar Aurore Rimlinger,Nathalie Raharimalala,Véronique Letort,Jean-Jacques Rakotomalala,Dominique Crouzillatet al. Annals of Botany, 2020, 126 (5), pp.849-863. ⟨10.1093/aob/mcaa073⟩ Article dans une revue hal-03167205v1
High-quality genome sequence of white lupin provides insight into soil exploration and seed quality Bárbara Hufnagel,André Marques,Alexandre Soriano,Laurence Marquès,Fanchon Divolet al. Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩ Article dans une revue hal-04721448v1
Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species Christophe Guyeux,Jean Charr,Hue T Tran,Agnelo Furtado,Robert J Henryet al. PLoS ONE, 2019, 14 (6), pp.e0216347. ⟨10.1371/journal.pone.0216347⟩ Article dans une revue hal-02370722v1
An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses Tiago Benedito dos Santos,João Danillo Moura Soares,Joni Esrom Lima,Juliana Christiny Silva,Suzana Tiemi Ivamotoet al. Functional and Integrative Genomics, 2019, 19 (1), pp.151-169. ⟨10.1007/s10142-018-0634-8⟩ Article dans une revue hal-03469108v1
Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions Renata de Castro Nunes,Simon Orozco-Arias,Dominique Crouzillat,Lukas Mueller,Suzy Strickleret al. Frontiers in Plant Science, 2018, 9, pp.175. ⟨10.3389/fpls.2018.00175⟩ Article dans une revue hal-03421885v1
Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L Gustavo C. Sant’ana,Luiz Pereira,David Pot,Suzana Tiemi Ivamoto,Douglas Domingueset al. Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-017-18800-1⟩ Article dans une revue hal-02546614v1
Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics Simon Orozco-Arias,Juan Liu,Reinel Tabares-Soto,Diego Ceballos,Douglas Silva Domingueset al. Biology, 2018, 7 (2), pp.32. ⟨10.3390/biology7020032⟩ Article dans une revue hal-03472296v1
CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora Jean-Christophe Breitler,Eveline Dechamp,Claudine Campa,Leonardo Augusto Zebral Rodrigues,Romain Guyotet al. Plant Cell, Tissue and Organ Culture, 2018, 134 (3), pp.383-394. ⟨10.1007/s11240-018-1429-2⟩ Article dans une revue hal-03432730v1
Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species Perla Hamon,Corrinne Grover,Aaron Davis,Jean-Jacques Rakotomalala,Nathalie Raharimalalaet al. Molecular Phylogenetics and Evolution, 2017, 109, pp.351-361. ⟨10.1016/j.ympev.2017.02.009⟩ Article dans une revue hal-03422451v1
Methylcytosine dioxygenase TET3 interacts with thyroid hormone nuclear receptors and stabilizes their association to chromatin Wenyue Guan,Romain Guyot,Jacques Samarut,Frederic Flamant,Jiemin Wonget al. Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (31), pp.8229-8234. ⟨10.1073/pnas.1702192114⟩ Article dans une revue hal-03278385v1
Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons Mathilde Dupeyron,Rogerio Fernandes de Souza,Perla Hamon,Alexandre de Kochko,Dominique Crouzillatet al. Molecular Genetics and Genomics, 2017, 292 (4), pp.741-754. ⟨10.1007/s00438-017-1308-2⟩ Article dans une revue hal-03423453v1
Pineapple Genome: A Reference for Monocots and CAM Photosynthesis Ray Ming,Ching Man Wai,Romain Guyot Trends in Genetics, 2016, 32 (11), pp.690-696. ⟨10.1016/j.tig.2016.08.008⟩ Article dans une revue hal-03477103v1
Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species Julissa Roncal,Romain Guyot,Perla Hamon,Dominique Crouzillat,Michel Rigoreauet al. Molecular Genetics and Genomics, 2016, 291 (1), pp.155-168. ⟨10.1007/s00438-015-1098-3⟩ Article dans une revue hal-03431261v1
Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico Andrea Garavito,Christophe Montagnon,Romain Guyot,Benoît Bertrand BMC Plant Biology, 2016, 16 (1), pp.242. ⟨10.1186/s12870-016-0933-y⟩ Article dans une revue hal-03443157v1
Developmental programmed cell death during asymmetric microsporogenesis in holocentric species of Rhynchospora (Cyperaceae) Danilo Rocha,André Marques,Celia G.T.J. Andrade,Romain Guyot,Srinivasa Chaluvadiet al. Journal of Experimental Botany, 2016, 67 (18), pp.5391-5401. ⟨10.1093/jxb/erw300⟩ Article dans une revue hal-03477144v1
Are Genetic and Epigenetic Instabilities of Plant Embryogenic Cells a Fatality? The Experience of Coffee Somatic Embryogenesis Herve Etienne,Benoit Bertrand,Eveline Dechamp,Patrick Maurel,Frédéric Georgetet al. Human Genetics & Embryology, 2016, 06 (01), pp.136. ⟨10.4172/2161-0436.1000136⟩ Article dans une revue hal-03476825v1
Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories Romain Guyot,Thibaud Darré,Mathilde Dupeyron,Alexandre de Kochko,Serge Hamonet al. Molecular Genetics and Genomics, 2016, 291 (5), pp.1979-1990. ⟨10.1007/s00438-016-1235-7⟩ Article dans une revue hal-03430588v1
Terminal-repeat Retrotransposons with GAG domain (TR-GAG) in plant genomes: A new testimony on the complex world of transposable elements Cristian Chaparro,Thomas Gayraud,Rogerio Fernandes de Souza,Douglas Silva Domingues,Sélastique Doffou Akaffouet al. Genome Biology and Evolution, 2015, 7 (2), pp.493-504. ⟨10.1093/gbe/evv001⟩ Article dans une revue hal-01162666v2
Assessment of genetic and epigenetic changes during cell culture ageing and relations with somaclonal variation in Coffea arabica Roberto Bobadilla Landey,Alberto Cenci,Romain Guyot,Benoît Bertrand,Frédéric Georgetet al. Plant Cell, Tissue and Organ Culture, 2015, 122 (3), pp.517-531. ⟨10.1007/s11240-015-0772-9⟩ Article dans une revue hal-03388147v1
The pineapple genome and the evolution of CAM photosynthesis Ray Ming,Robert Vanburen,Ching Man Wai,Haibao Tang,Michael C. Schatzet al. Nature Genetics, 2015, 47 (12), pp.1435-1442. ⟨10.1038/ng.3435⟩ Article dans une revue hal-03478898v1
Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses Fabíola Carvalho Santos,Romain Guyot,Cacilda Borges Do Valle,Lucimara Chiari,Vânia Helena Techioet al. Chromosome Research, 2015, 23 (3), pp.571-582. ⟨10.1007/s10577-015-9492-6⟩ Article dans une revue hal-03478996v1
Genome-wide analysis of LTR-retrotransposons in oil palm Thierry Beulé,Mawussé Dt Agbessi,Stephane Dussert,Estelle Jaligot,Romain Guyot BMC Genomics, 2015, 16, pp.795. ⟨10.1186/s12864-015-2023-1⟩ Article dans une revue hal-03205781v1
Large distribution and high sequence identity of a Copia‑type retrotransposon in angiosperm families Elaine Silva Dias,Clémence Hatt,Perla Hamon,Serge Hamon,Michel Rigoreauet al. Plant Molecular Biology, 2015, 89 (1-2), pp.83-97. ⟨10.1007/s11103-015-0352-8⟩ Article dans une revue ird-01225496v1
Origin and domestication of papaya Y-h chromosome Robert Vanburen,Fanchang Zeng,Cuixia Chen,Jisen Zhang,Ching Man Waiet al. Genome Research, 2015, 25 (4), pp.524-533. ⟨10.1101/gr.183905.114⟩ Article dans une revue hal-03479048v1
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis France Denoeud,Lorenzo Carretero-Paulet,Alexis Dereeper,Gaëtan Droc,Romain Guyotet al. Science, 2014, 345 (6201), pp.1181-1184. ⟨10.1126/science.1255274⟩ Article dans une revue hal-02641562v1
BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution Alexis Dereeper,Romain Guyot,Christine Tranchant-Dubreuil,François Anthony,Xavier Argoutet al. Plant Molecular Biology, 2013, 83, pp.177-189. ⟨10.1007/s11103-013-0077-5⟩ Article dans une revue istex cea-04667063v1
In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1 Mauricio Soto-Suárez,Diana Bernal,Carolina González,Boris Szurek,Romain Guyotet al. BMC Microbiology, 2010, 10, pp.170. ⟨10.1186/1471-2180-10-170⟩ Article dans une revue ird-01075143v1
A genetic model for the female sterility barrier between Asian and African cultivated rice species. Andrea Garavito,Romain Guyot,Jaime Lozano,Frédérick F. Gavory,Sylvie Samainet al. Genetics, 2010, 185 (4), pp.1425-40. ⟨10.1534/genetics.110.116772⟩ Article dans une revue hal-00787398v1
Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes. Romain Guyot,Marion de La Mare,Véronique Viader,Perla Hamon,Olivier Coritonet al. BMC Plant Biology, 2009, 9 (22), pp.22. ⟨10.1186/1471-2229-9-22⟩ Article dans une revue hal-00695701v1
RetrOryza: a database of the rice LTR-retrotransposons. Cristian Chaparro,Romain Guyot,Andrea Zuccolo,Benoit Piegu,Olivier Panaud Nucleic Acids Research, 2007, 35 (Database issue), pp.D66-70. ⟨10.1093/nar/gkl780⟩ Article dans une revue hal-00164403v1
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Benoit Piegu,Romain Guyot,Nathalie Picault,Anne Roulin,Abhijit Saniyalet al. Genome Research, 2006, 16 (10), pp.1262-9. ⟨10.1101/gr.5290206⟩ Article dans une revue hal-00164404v1
Identification of 66 box C/D snoRNAs in Arabidopsis thaliana: extensive gene duplications generated multiple isoforms predicting new ribosomal RNA 2'-O-methylation sites Fredy Barneche,Christine Gaspin,Romain Guyot,Manuel Echeverria Journal of Molecular Biology, 2001, 311 (1), pp.57-73. ⟨10.1006/jmbi.2001.4851⟩ Article dans une revue istex hal-02677526v1

Communication dans un congrès (2)

Genome-wide analysis of Transcriptional and post-Transcriptionnal regulations in hevea under abiotic stresses Wu Shuangyang,Romain Guyot,Romain Guyot,Stéphanie Sidibé-Bocs,Benoît Farinaset al. International Conference on Crop Improvement (ICCI 2019), Nov 2019, Kuala Lumpur, Malaysia. pp.1-4 Communication dans un congrès hal-05174567v1
Genome-wide association study identify SNPs and genomic regions for lipids and diterpenes contents in Coffea arabica related to its domestication Luiz Filipe P. Pereira,Gustavo Cesar Sant'Ana,Rafaelle V. Ferreira,Bruna S.R. Silva,Lívia M. Nogueiraet al. Biennial ASIC Conference, ASIC; SCA, Sep 2018, Portland, United States. 1 p Communication dans un congrès hal-05174204v1

Chapitre d'ouvrage (1)

From Rice to Other Cereals: Comparative Genomics Richard Cooke,Benoit Piegu,Olivier Panaud,Romain Guyot,Jérôme Salseet al. Rice Functional Genomics, Springer New York, pp.429-479, 2007 Chapitre d'ouvrage hal-02114392v1

Pré-publication, Document de travail (1)

Genome sequence of the cluster root forming white lupin; Barbara Hufnagel,André Marques,Alexandre Soriano,Laurence Marquès,Fanchon Divolet al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02790529v1