Raluca Uricaru

29

Documents

Publications

	Optimizing hybrid ensemble feature selection strategies for transcriptomic biomarker discovery in complex diseases Elsa Claude , Mickaël Leclercq , Patricia Thébault , Arnaud Droit , Raluca Uricaru NAR Genomics and Bioinformatics, 2024, 6 (3), ⟨10.1093/nargab/lqae079⟩ Journal articles hal-04709793v1
	Erratum to “N-3 PUFA deficiency disrupts oligodendrocyte maturation and myelin integrity during brain development” Quentin Leyrolle , Fanny Decoeur , Cyril Dejean , Marie-Galadriel Briere , Stephane Leon Glia, 2023, 71 (3), pp.796-796. ⟨10.1002/glia.24321⟩ Journal articles hal-03998738v1
	N‐3 PUFA deficiency disrupts oligodendrocyte maturation and myelin integrity during brain development Quentin Leyrolle , Fanny Decoeur , Cyril Dejean , Marie-Galadriel Briere , Stephane Leon Glia, 2022, 70 (1), pp.50-70. ⟨10.1002/glia.24088⟩ Journal articles hal-03347586v1
	Consensus clustering applied to multi-omics disease subtyping Galadriel Brière , Élodie Darbo , Patricia Thébault , Raluca Uricaru BMC Bioinformatics, 2021, 22 (1), pp.361. ⟨10.1186/s12859-021-04279-1⟩ Journal articles inserm-03282498v1
	Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads Yvan Le Bras , Olivier Collin , Cyril Monjeaud , Vincent Lacroix , Eric Rivals GigaScience, 2016, 5 (1), ⟨10.1186/s13742-015-0105-2⟩ Journal articles hal-01280238v1
	MICADo - Looking for mutations in targeted PacBio cancer data: an alignment-free method Justine Rudewicz , Hayssam Soueidan , Raluca Uricaru , Hervé Bonnefoi , Richard Iggo Frontiers in Genetics, 2016, ⟨10.3389/fgene.2016.00214⟩ Journal articles hal-01409750v1
	YOC, A new strategy for pairwise alignment of collinear genomes Raluca Uricaru , Célia Michotey , Hélène Chiapello , Eric Rivals BMC Bioinformatics, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩ Journal articles lirmm-01170968v1
	Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph Gaëtan Benoit , Claire Lemaitre , Dominique Lavenier , Erwan Drezen , Thibault Dayris BMC Bioinformatics, 2015, 16 (1), ⟨10.1186/s12859-015-0709-7⟩ Journal articles hal-01214682v1
	Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks. Patricia Thebault , Romain Bourqui , Benchimol William , Christine Gaspin , Pascal Sirand-Pugnet Briefings in Bioinformatics, 2015, 16 (5), pp.1-11. ⟨10.1093/bib/bbu045⟩ Journal articles hal-01090907v1
	Reference-free detection of isolated SNPs Raluca Uricaru , Guillaume Rizk , Vincent Lacroix , Elsa Quillery , Olivier Plantard Nucleic Acids Research, 2014, 43 (2), pp.e11. ⟨10.1093/nar/gku1187⟩ Journal articles hal-01083715v1
	KISSPLICE: de-novo calling alternative splicing events from RNA-seq data Gustavo Sacomoto , Janice Kielbassa , Rayan Chikhi , Raluca Uricaru , Pavlos Antoniou BMC Bioinformatics, 2012, 13 (Suppl 6), pp.S5. ⟨10.1186/1471-2105-13-S6-S5⟩ Journal articles hal-00784407v1
	An Alternative Approach to Multiple Genome Comparison Alban Mancheron , Raluca Uricaru , Eric Rivals Nucleic Acids Research, 2011, 39 (15), pp.e101. ⟨10.1093/nar/gkr177⟩ Journal articles lirmm-00620931v1
	Novel definition and algorithm for chaining fragments with proportional overlaps Raluca Uricaru , Alban Mancheron , Eric Rivals Journal of Computational Biology, 2011, 18 (9), pp.1141-1154. ⟨10.1089/cmb.2011.0126⟩ Journal articles lirmm-00834143v1
	Reliable Bacterial Genome Comparison Tools Eric Rivals , Alban Mancheron , Raluca Uricaru ERCIM News, 2010, 82, pp.017-018 Journal articles lirmm-00511509v1

	Exploring variability of machine learning methods: first steps towards cancer biomarkers consensus signatures Elsa Claude , Mickaël Leclercq , Arnaud Droit , Patricia Thebault , Raluca Uricaru Journées Ouvertes en Biologie, Informatique et Mathématiques JOBIM 2022, Jul 2022, Rennes, France Conference papers hal-04090236v1
	On the Shortest Common Superstring of NGS Reads Tristan Braquelaire , Marie Gasparoux , Mathieu Raffinot , Raluca Uricaru Theory and Applications of Models of Computation, Apr 2017, Bern, Switzerland. pp.97-111, ⟨10.1007/978-3-319-55911-7_8⟩ Conference papers hal-02492119v1
	Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps Raluca Uricaru , Alban Mancheron , Eric Rivals RECOMB-CG: Comparative Genomics, Oct 2010, Ottawa, Canada. pp.161-172, ⟨10.1007/978-3-642-16181-0_14⟩ Conference papers lirmm-00527915v1
	Improved sensitivity and reliability of anchor based genome alignment Raluca Uricaru , Célia Michotey , Laurent Noé , Helene H. Chiapello , Eric Rivals JOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p Conference papers hal-02751358v1
	Ehrlichia Ruminantium Genome Segmentations Reveal Novel Homologous Genes Alban Mancheron , Raluca Uricaru , Eric Rivals ISCB Africa ASBCB Joint Conference on Bioinformatics of Infectious Diseases, Nov 2009, Bamako, Mali Conference papers lirmm-00491362v1
	Improved Sensitivity And Reliability Of Anchor Based Genome Alignment Raluca Uricaru , Célia Michotey , Laurent Noé , Hélène Chiapello , Eric Rivals JOBIM 2009 - 10es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36 Conference papers lirmm-00407215v1
	A new type of Hidden Markov Models to predict complex domain architecture in protein sequences Raluca Uricaru , Laurent Brehelin , Eric Rivals JOBIM 2007 - 8es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2007, Marseille, France. pp.97-102 Conference papers lirmm-00195493v1
	A new type of Hidden Markov Models to predict complex motif organization in protein sequences Raluca Uricaru , Laurent Brehelin , Eric Rivals Integrative Post-Genomics, 2006, Lyon, pp.43 Conference papers lirmm-00120171v1

	Looking for mutations in PacBio cancer data: an alignment-free method Justine Rudewicz , Hayssam Soueidan , Raluca Uricaru , Richard Iggo , Jonas Bergh JOBIM 2015, Jul 2015, Clermont-Ferrand, France Conference poster hal-01254846v1
	SNP discovery in pea: a powerful tool for academic research and breeding Gilles Boutet , J. Duarte , Susete Alves Carvalho , Clément Lavaud , Raluca Uricaru 6. International Food Legumes Research Conference (IFLRC VI), Jul 2014, Saskatook, Canada. , 2014 Conference poster hal-01208702v1
	Reference-free high-throughput SNP detection in pea: an example of discoSnp usage for a non-model complex genome Susete Alves Carvalho , Raluca Uricaru , Jorge Duarte , Claire Lemaitre , Nathalie Rivière ECCB 2014, Sep 2014, Strasbourg, France Conference poster hal-01091184v1

	A Novel Approach for Comparative Genomics & Annotation Transfer Alban Mancheron , Raluca Uricaru , Eric Rivals 2010 Other publications lirmm-00491326v2

	On improving the approximation ratio of the r-shortest common superstring problem Tristan Braquelaire , Marie Gasparoux , Mathieu Raffinot , Raluca Uricaru 2019 Preprints, Working Papers, ... hal-02414032v1

	kisSplice, détection d'évènements d'épissages alternatifs dans les données RNA-seq Gustavo Akio Tominaga Sacomoto , J. Kielbassa , Pavlos Antoniou , Rayan Chikhi , Raluca Uricaru [Research Report] RR-7852, INRIA. 2011, pp.12 Reports hal-00654249v2

	Algorithms for genome comparison applied to bacterial genomes Raluca Uricaru Bioinformatics [q-bio.QM]. Université Montpellier 2, 2010. English. ⟨NNT : ⟩ Theses tel-01084551v1