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Raluca Uricaru



MICADo - Looking for mutations in targeted PacBio cancer data: an alignment-free method

Justine Rudewicz , Hayssam Soueidan , Raluca Uricaru , Hervé Bonnefoi , Richard Iggo
Frontiers in Genetics, 2016, ⟨10.3389/fgene.2016.00214⟩
Journal articles hal-01409750v1
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Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras , Olivier Collin , Cyril Monjeaud , Vincent Lacroix , Eric Rivals
GigaScience, 2016, 5 (1), ⟨10.1186/s13742-015-0105-2⟩
Journal articles hal-01280238v1

Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks.

Patricia Thebault , Romain Bourqui , Benchimol William , Christine Gaspin , Pascal Sirand-Pugnet
Briefings in Bioinformatics, 2015, 16 (5), pp.1-11. ⟨10.1093/bib/bbu045⟩
Journal articles hal-01090907v1
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Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

Gaëtan Benoit , Claire Lemaitre , Dominique Lavenier , Erwan Drezen , Thibault Dayris
BMC Bioinformatics, 2015, 16 (1), ⟨10.1186/s12859-015-0709-7⟩
Journal articles hal-01214682v1
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YOC, A new strategy for pairwise alignment of collinear genomes

Raluca Uricaru , Célia Michotey , Hélène Chiapello , Eric Rivals
BMC Bioinformatics, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩
Journal articles lirmm-01170968v1
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Reference-free detection of isolated SNPs

Raluca Uricaru , Guillaume Rizk , Vincent Lacroix , Elsa Quillery , Olivier Plantard
Nucleic Acids Research, 2014, 43 (2), pp.e11. ⟨10.1093/nar/gku1187⟩
Journal articles hal-01083715v1
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KISSPLICE: de-novo calling alternative splicing events from RNA-seq data

Gustavo Sacomoto , Janice Kielbassa , Rayan Chikhi , Raluca Uricaru , Pavlos Antoniou
BMC Bioinformatics, 2012, 13 (Suppl 6), pp.S5. ⟨10.1186/1471-2105-13-S6-S5⟩
Journal articles hal-00784407v1
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An Alternative Approach to Multiple Genome Comparison

Alban Mancheron , Raluca Uricaru , Eric Rivals
Nucleic Acids Research, 2011, 39 (15), pp.e101. ⟨10.1093/nar/gkr177⟩
Journal articles lirmm-00620931v1
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Novel definition and algorithm for chaining fragments with proportional overlaps

Raluca Uricaru , Alban Mancheron , Eric Rivals
Journal of Computational Biology, 2011, 18 (9), pp.1141-1154. ⟨10.1089/cmb.2011.0126⟩
Journal articles lirmm-00834143v1
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Reliable Bacterial Genome Comparison Tools

Eric Rivals , Alban Mancheron , Raluca Uricaru
ERCIM News, 2010, 82, pp.017-018
Journal articles lirmm-00511509v1
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Exploring variability of machine learning methods: first steps towards cancer biomarkers consensus signatures

Elsa Claude , Mickaël Leclercq , Arnaud Droit , Patricia Thebault , Raluca Uricaru
Journées Ouvertes en Biologie, Informatique et Mathématiques JOBIM 2022, Jul 2022, Rennes, France
Conference papers hal-04090236v1

On the Shortest Common Superstring of NGS Reads

Tristan Braquelaire , Marie Gasparoux , Mathieu Raffinot , Raluca Uricaru
Theory and Applications of Models of Computation, Apr 2017, Bern, Switzerland. pp.97-111, ⟨10.1007/978-3-319-55911-7_8⟩
Conference papers hal-02492119v1
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Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps

Raluca Uricaru , Alban Mancheron , Eric Rivals
RECOMB-CG: Comparative Genomics, Oct 2010, Ottawa, Canada. pp.161-172, ⟨10.1007/978-3-642-16181-0_14⟩
Conference papers lirmm-00527915v1
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Improved Sensitivity And Reliability Of Anchor Based Genome Alignment

Raluca Uricaru , Célia Michotey , Laurent Noé , Hélène Chiapello , Eric Rivals
JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36
Conference papers lirmm-00407215v1

Ehrlichia Ruminantium Genome Segmentations Reveal Novel Homologous Genes

Alban Mancheron , Raluca Uricaru , Eric Rivals
ISCB Africa ASBCB Joint Conference on Bioinformatics of Infectious Diseases, Nov 2009, Bamako, Mali
Conference papers lirmm-00491362v1
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Improved sensitivity and reliability of anchor based genome alignment

Raluca Uricaru , Célia Michotey , Laurent Noé , Helene H. Chiapello , Eric Rivals
JOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p
Conference papers hal-02751358v1
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A new type of Hidden Markov Models to predict complex domain architecture in protein sequences

Raluca Uricaru , Laurent Brehelin , Eric Rivals
JOBIM: Journées Ouvertes Biologie, Informatique, Mathématiques, Jul 2007, Marseille, France. pp.97-102
Conference papers lirmm-00195493v1

A new type of Hidden Markov Models to predict complex motif organization in protein sequences

Raluca Uricaru , Laurent Brehelin , Eric Rivals
Integrative Post-Genomics, 2006, Lyon, pp.43
Conference papers lirmm-00120171v1
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Algorithms for genome comparison applied to bacterial genomes

Raluca Uricaru
Bioinformatics [q-bio.QM]. Université Montpellier 2, 2010. English. ⟨NNT : ⟩
Theses tel-01084551v1