Sabine Peres

Publications

Proceedings/Recueil des communications (1)

Proceedings of the 23rd International Conference on Computational Methods in Systems Biology François Fages,Sabine Pérès CMSB 2025, Sep 2025, Lyon, France. Lecture Notes in Computer Science, Lecture Notes in Computer Science (LNCS-15959), Springer Nature Switzerland, 2025, Proceedings of the 23rd International Conference on Computational Methods in Systems Biology, CMSB 2025., ⟨10.1007/978-3-032-01436-8⟩ Proceedings/Recueil des communications hal-05396349v1

Article dans une revue (25)

Modelling energy metabolism dysregulations in neuromuscular diseases: A case study of calpainopathy Camille Siharath,Olivier Biondi,Sabine Peres Heliyon, 2024, 10 (24), pp.e40918. ⟨10.1016/j.heliyon.2024.e40918⟩ Article dans une revue hal-04845028v1
Logic programming-based Minimal Cut Sets reveal consortium-level therapeutic targets for chronic wound infections Maxime Mahout,Ross Carlson,Laurent Simon,Sabine Peres npj Systems Biology and Applications, 2024, 10 (1), pp.34. ⟨10.1038/s41540-024-00360-6⟩ Article dans une revue hal-04610153v1
Metabolic modelling links Warburg effect to collagen formation, angiogenesis and inflammation in the tumoral stroma Maxime Mahout,Laurent Schwartz,Romain Attal,Ashraf Bakkar,Sabine Peres PLoS ONE, 2024, 19 (12), pp.e0313962. ⟨10.1371/journal.pone.0313962⟩ Article dans une revue hal-04873696v1
Special Issue on “Frontiers in Connecting Steady-State and Dynamic Approaches for Modelling Cell Metabolic Behavior” Sabine Peres,Mario Jolicoeur Processes, 2022, Frontiers in Connecting Steady-State and Dynamic Approaches for Modelling Cell Metabolic Behavior), 10 (8), pp.1612. ⟨10.3390/pr10081612⟩ Article dans une revue hal-03903344v1
Combining Kinetic and Constraint-Based Modelling to Better Understand Metabolism Dynamics Cecile Moulin,Laurent Tournier,Sabine S. Peres Processes, 2021, 9 (10), pp.1701. ⟨10.3390/pr9101701⟩ Article dans une revue hal-03592743v1
Fine-tuning mitochondrial activity in Yarrowia lipolytica for citrate overproduction Jorgelindo da Veiga Moreira,Mario Jolicoeur,Laurent Schwartz,Sabine Peres Scientific Reports, 2021, 11 (1), pp.878. ⟨10.1038/s41598-020-79577-4⟩ Article dans une revue hal-03209507v1
Cancer and Alzheimer’s disease: intracellular pH scales the metabolic disorders Laurent Schwartz,Sabine S. Peres,Mario Jolicoeur,Jorgelindo da Veiga Moreira Biogerontology, 2020, 21 (6), pp.683-694. ⟨10.1007/s10522-020-09888-6⟩ Article dans une revue hal-02968151v1
Answer Set Programming for Computing Constraints-Based Elementary Flux Modes: Application to Escherichia coli Core Metabolism Maxime Mahout,Ross Carlson,Sabine Peres Processes, 2020, 8 (12), pp.1649. ⟨10.3390/pr8121649⟩ Article dans une revue hal-03209519v1
A kinetic metabolic study of lipid production in Chlorella protothecoides under heterotrophic condition Xiaojie Ren,Jean-Sébastien Deschênes,Réjean Tremblay,Sabine Pérès,Mario Jolicœur Microbial Cell Factories, 2019, 18 (1), pp.113. ⟨10.1186/s12934-019-1163-4⟩ Article dans une revue hal-02531282v1
Metabolic therapies inhibit tumor growth in vivo and in silico Jorgelindo da Veiga Moreira,Minoo Hamraz,Mohammad Abolhassani,Laurent H Schwartz,Mario Jolicœuret al. Scientific Reports, 2019, 9 (1), pp.3153. ⟨10.1038/s41598-019-39109-1⟩ Article dans une revue hal-02392935v1
Thermodynamic constraints for identifying elementary flux modes Sabine Pérès,Stefan Schuster,Philippe Dague Biochemical Society Transactions, 2018, 46 (3), pp.641-647. ⟨10.1042/BST20170260⟩ Article dans une revue hal-01802074v1
Identifying Biomarkers of Wharton’s Jelly Mesenchymal Stromal Cells Using a Dynamic Metabolic Model: The Cell Passage Effect Benoît Laflaquière,Gabrielle Leclercq,Chandarong Choey,Jingkui Chen,Sabine Pérèset al. Metabolites, 2018, 8 (1), pp.18. ⟨10.3390/metabo8010018⟩ Article dans une revue hal-01784012v1
A dynamic metabolic flux analysis of ABE (acetone-butanol-ethanol) fermentation by Clostridium acetobutylicum ATCC 824, with riboflavin as a by-product Xinhe Zhao,Mayssa Kasbi,Jingkui Chen,Sabine Pérès,Mario Jolicœur Biotechnology and Bioengineering, 2017, 114 (12), pp.2907 - 2919. ⟨10.1002/bit.26393⟩ Article dans une revue hal-01709638v1
How important is thermodynamics for identifying elementary flux modes? Sabine Pérès,Mario Jolicœur,Cecile Moulin,Philippe Dague,Stefan Schuster PLoS ONE, 2017, 12 (2), pp.e0171440. ⟨10.1371/journal.pone.0171440⟩ Article dans une revue hal-01709642v1
The Redox Status of Cancer Cells Supports Mechanisms behind the Warburg Effect Jorgelindo da Veiga Moreira,Minoo Hamraz,Mohammad Abolhassani,Erwan Bigan,Sabine Pérèset al. Metabolites, 2016, 6 (4), 12 p. ⟨10.3390/metabo6040033⟩ Article dans une revue hal-01417967v1
Cell cycle progression is regulated by intertwined redox oscillators Jorgelindo da Veiga Moreira,Sabine Pérès,Jean-Marc Steyaert,Erwan Bigan,Loïc Paulevéet al. Theoretical Biology and Medical Modelling, 2015, 12 (1), pp.10. ⟨10.1186/s12976-015-0005-2⟩ Article dans une revue hal-01158514v1
Elementary Flux Modes Analysis of Functional Domain Networks Allows a Better Metabolic Pathway Interpretation Sabine Pérès,Liza L. Felicori,Franck Molina PLoS ONE, 2013, 8 (10), ⟨10.1371/journal.pone.0076143⟩ Article dans une revue hal-01709661v1
Analysis of the variability of human normal urine by 2D-GE reveals a &quot;public&quot; and a &quot;private&quot; proteome Laurence Molina,Nicolas Salvetat,Randa Ben Ameur,Sabine Pérès,Nicolas Sommereret al. Journal of Proteomics, 2011, 75 (1), pp.70 - 80. ⟨10.1016/j.jprot.2011.06.031⟩ Article dans une revue istex hal-02652376v1
ACoM: A classification method for elementary flux modes based on motif finding Sabine Pérès,Francois Vallee,Marie M. Beurton-Aimar,Jean-Pierre Mazat BioSystems, 2011, 103 (3), pp.410-419 Article dans une revue hal-00629161v1
Computing biological functions using BioΨ, a formal description of biological processes based on elementary bricks of actions Sabine Peres,Liza Felicori,Stéphanie Rialle,Elodie Jobard,Franck Molina Bioinformatics, 2010, 26 (12), pp.1542-1547. ⟨10.1093/bioinformatics/btq169⟩ Article dans une revue hal-04814816v1
BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks Stéphanie Rialle,Liza Felicori,Camila Dias-Lopes,Sabine Peres,Sanaâ El Atiaet al. Bioinformatics, 2010, 26 (18), pp.2298-2304. ⟨10.1093/bioinformatics/btq409⟩ Article dans une revue hal-04814810v1
A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics Sabine Peres,Laurence Molina,Nicolas Salvetat,Claude Granier,Franck Molina BMC Bioinformatics, 2008, 9 (1), pp.460. ⟨10.1186/1471-2105-9-460⟩ Article dans une revue hal-04814821v1
Structure et modélisation des réseaux métaboliques Jean-Pierre Mazat,Christine Nazaret,Sabine Pérès Biofutur, 2007, 275, pp.29-33 Article dans une revue hal-00282723v1
Mycotoxin fumonisin B-1 selectively down-regulates the basal IL-8 expression in pig intestine: in vivo and in vitro studies S Bouhet,E Le Dorze,Sabine Pérès,Jm Fairbrother,Isabelle P. Oswald Food and Chemical Toxicology, 2006, 44 (10), pp.1768-1773 Article dans une revue hal-02665625v1
Contribution of Computational Tree Logic to Biological Regulatory Networks: Example from Pseudomonas Aeruginosa Sabine Peres,Comet Jean-Paul Lecture Notes in Computer Science, 2003, Lecture Notes in Computer Science, 2602, pp.47-56. ⟨10.1007/3-540-36481-1_5⟩ Article dans une revue hal-04814744v1

Communication dans un congrès (23)

Computing Thermodynamically Consistent Elementary Flux Modes with Answer Set Programming Emma Crisci,Maxime Mahout,Sabine Peres CMSB 2024 - 22nd International Conference Computational Methods in Systems Biology, Sep 2024, Pise, Italy. pp.80-88, ⟨10.1007/978-3-031-71671-3_7⟩ Communication dans un congrès hal-04707880v1
Hybrid modelling to Solve Optimal Concentrations of Metabolites and Enzymes in Constraint-based modelling Sabine Peres BIOSTEC 2023, Feb 2023, Lisbon (Portugal), Portugal Communication dans un congrès hal-04036239v1
Minimal Cut Sets of a Consortium Model of P. aeruginosa and S. aureus Reveal New Cross-Feeding Interactions Maxime Mahout,Sabine Peres Metabolic Pathway Analysis 2023, Jul 2023, Séoul [en ligne], South Korea Communication dans un congrès hal-04392553v1
Geometric programming to Solve Optimal Concentrations of Metabolites and Enzymes in Constraint-based modelling Sabine Peres,Marc Dinh,Vincent Fromion International Conference on System Biology, Oct 2022, Berlin, Germany Communication dans un congrès hal-03903360v1
Mod ́elisation m ́etabolique pour identifier de nouvelles strat ́egies de contrˆole des organismes vivants Sabine Peres Meetochondrie, May 2022, Lège-Cap-Ferret, France Communication dans un congrès hal-03903355v1
Hybrid metabolic modeling to identify new control strategies of living organisms Sabine Peres Hybrid models and methods in systems medicine, Jul 2022, Paris, France Communication dans un congrès hal-03903353v1
Answer set programming to compute constraint elementary flux modes Maxime Mahout,Laurent Simon,Sabine Peres Metabolic Pathway Analysis, Aug 2021, Knoxville, United States Communication dans un congrès hal-03903367v1
Answer set programming to compute constraint elementary flux modes Maxime Mahout,Laurent Simon,Sabine Peres Computational Methods in System Biology, Sep 2021, Bordeaux, France Communication dans un congrès hal-03903363v1
Modulating mitochondria horsepower for biotechnological applications Jorgelindo da Veiga Moreira,Laurent Schwartz,Sabine S. Peres Metabolic Pathway Analysis 2019, Aug 2019, Riga, Latvia Communication dans un congrès hal-03230443v1
Using a hybrid approach to model central carbon metabolism across the cell cycle Cecile Moulin,Laurent Tournier,Sabine Pérès International Workshop on Hybrid Systems Biology, Apr 2019, Prague, Czech Republic. ⟨10.1007/978-3-030-28042-0_9⟩ Communication dans un congrès hal-02791386v1
Metabolic view of tumor growth: a kinetic model to screen potential therapeutic targets Sabine Pérès Computational systems biology for cancer, Jan 2018, Paris, France Communication dans un congrès hal-01802079v1
HSM a reduced model of Central Carbon Metabolism: a dynamical approach Bertrand Beauvoit,Sophie Colombie,Razanne Issa,Jean-Pierre Mazat,Christine Nazaretet al. advances in Systems and Synthetic Biology, Mar 2017, Lyon, France Communication dans un congrès hal-01709748v1
Computing EFMs consistent with equilibrium constants Sabine Pérès,Philippe Dague,Mario Jolicœur,Stefan Schuster Metabolic Pathway Analysis MPA 2017, Jul 2017, Bozeman, United States Communication dans un congrès hal-01676892v1
Human-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cells Bertrand Beauvoit,Sophie Colombie,Razanne Issa,Jean-Pierre Mazat,Christine Nazaretet al. advances in Systems and Synthetic Biology, Mar 2016, Evry, France Communication dans un congrès hal-01709760v1
Représentation systémique multi-échelle des processus biologiques de la bactérie Vincent Henry,Arnaud Ferré,Christine Froidevaux,Anne Goelzer,Vincent Fromionet al. IC201: 27es Journées francophones d'Ingénierie des Connaissances, Jun 2016, Montpellier, France Communication dans un congrès hal-02741418v1
Représentation systémique multi-échelle des processus biologiques de la bactérie Vincent J. Henry,Arnaud Ferré,Christine Froidevaux,Anne Goelzer,Vincent V. Fromionet al. IC2016 - Ingénierie des Connaissances, Jun 2016, Montpellier, France Communication dans un congrès hal-01442727v1
Minimality of Metabolic Flux Modes under Boolean Regulation Constraints Morterol Martin,Philippe Dague,Sabine Pérès,Laurent Simon 12th International Workshop on Constraint-Based Methods for Bioinformatics WCB’16, Sep 2016, Toulouse, France Communication dans un congrès hal-01483433v1
Systematic study of a metabolic network Bertrand P Beauvoit,Sophie Colombié,Jean-Pierre Mazat,Christine Nazaret,Sabine Pérès advances in Systems and Synthetic Biology, Mar 2014, Evry, France. 173 p Communication dans un congrès hal-01108859v1
SAT-Based Metabolics Pathways Analysis without Compilation Sabine Pérès,Morterol Martin,Laurent Simon CMSB 2014, Nov 2014, Manchester, United Kingdom Communication dans un congrès hal-01108840v1
Analysis of metabolic networks using elementary flux modes Sabine Pérès Advances in systems and synthetic biology, Mar 2013, La Colle-sur-Loup, France. pp.165--170 Communication dans un congrès hal-00946692v1
Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study Cécile Fleury,Marie Francoise M. F. Gautier,Pierre Larmande,Sabine Pérès,Frédéric F. de Lamotteet al. JOBIM2010, Sep 2010, Montpellier, France Communication dans un congrès hal-02753839v1
Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study Cécile Fleury,Marie Francoise M. F. Gautier,Pierre Larmande,Sabine Pérès,Frédéric F. de Lamotteet al. Séminaire Génomique Végétale, Mar 2010, Pont-Royal en Provence, France Communication dans un congrès hal-02752562v1
Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study Cécile Fleury,Marie Francoise M. F. Gautier,Pierre Larmande,Sabine Pérès,Frédéric F. de Lamotteet al. 18. Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Jul 2010, Boston, United States Communication dans un congrès hal-02753301v1

Chapitre d'ouvrage (1)

Thermodynamic Approaches in Flux Analysis Sabine S. Peres,Vincent Fromion Metabolic Flux Analysis in Eukaryotic Cells, Humana, pp.359-367, 2020, Methods in Molecular Biology, ⟨10.1007/978-1-0716-0159-4_17⟩ Chapitre d'ouvrage hal-02968157v1

Ouvrages (1)

Géographie des interfaces. Une nouvelle vision du territoire C. Lampin-Maillet,Sabine Pérès,J.P. Ferrier,P. Allard Editions Quae, pp.168, 2010, 978-2-7592-0857-9 Ouvrages hal-02593957v1