Skip to Main content
New interface
Number of documents

1

Samuel Blanquart, Inria researcher in bioinformatics and molecular biology


Main research topics

  • Phylogenetics. Phylogenetic modelling (PhD thesis 2007), phylogenetic inferences and ancestral sequence reconstruction (e.g. see Blanquart et al. 2021). Phylogenetic and functional nalysis of a complex multi-paralog and multidomaine gene familly, the ADAM TS/TSL (PhD student: Olivier Dennler).
  • Metagenomics. Reconstruction of phylogenetic markers from metagenomic data (PhD student, Pierre Pericard).
  • Transcriptomics. Modelling of the gene orthologous splicing structures and prediction of orthologous isoforms (PhD student: Nicolas Guillaudeux. Postdoctoral fellow: Antoine Aymeric-Lorquin, 2018). Evolution of the TRPM8 isoforms in Amniota (Blanquart et al 2019).
  • System biology. Estimating ecosystem metabolisms from sequenced 16S RNA environmental samples (PhD student Arnaud Belcour).

 

PhD Students

  • Pierre Pericard. PhD defense December 2017. BONSAI team, Inria / Lille University.
  • Nicolas Guillaudeux. 2018-2021. PhD defense December 2021. DYLISS team, Inria Rennes University.
  • Arnaud Belcour. Since 2019. DYLISS team, Inria / Rennes University.
  • Olivier Dennler. Since 2019. DYLISS team, Inria / Rennes University.

 

Positions

  • Since 2018. Junior researcher at Inria Rennes - Bretagne Atlantique, DYLISS team (Rennes, France).
  • 2010 to 2018. Junior researcher at Inria Lille - Nord Europe, BONSAI team (Lille France).
  • 2010. Posdoctoral fellow at ISEM, Molecular evolution team (Montpellier, France).
  • 2009. Postdoctoral fellow at EBI, Goldman group (Cambridge, UK).
  • 2007 to 2009. Postdoctoral fellow at LIRMM, MAB team (Montepellier, France).
  • 2004 to 2007. PhD student at LIRMM, MAB team (Montpellier, France).


Emmanuel J.P. Douzery   

Journal articles1 document

  • Tiratha Raj Singh, Georgia Tsagkogeorga, Frédéric Delsuc, Samuel Blanquart, Noa Shenkar, et al.. Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.. BMC Genomics, BioMed Central, 2009, 10, pp.534. ⟨10.1186/1471-2164-10-534⟩. ⟨halsde-00438100⟩