Samuel Blanquart

Présentation

Publications

Article dans une revue (21)

FUSE-PhyloTree: Linking functions and sequence conservation modules of a protein family through phylogenomic analysis Olivier Dennler,Elisa Chenel,François Coste,Samuel Blanquart,Catherine Belleannéeet al. Bioinformatics, 2025, pp.btaf479. ⟨10.1093/bioinformatics/btaf479⟩ Article dans une revue hal-05238604v1
A duo of fungi and complex and dynamic bacterial community networks contribute to shape the Ascophyllum nodosum holobiont Coralie Rousseau,Gwenn Tanguy,Erwan Legeay,Samuel Blanquart,Arnaud Belcouret al. Environmental Microbiome, 2025, pp.1-53. ⟨10.1186/s40793-025-00825-z⟩ Article dans une revue hal-05413201v1
SPARTA: Interpretable functional classification of microbiomes and detection of hidden cumulative effects Baptiste Ruiz,Arnaud Belcour,Samuel Blanquart,Sylvie Buffet-Bataillon,Isabelle Luron Le Huërou-Luronet al. PLoS Computational Biology, 2024, 20 (11), pp.e1012577. ⟨10.1371/journal.pcbi.1012577⟩ Article dans une revue hal-04816962v1
Empirical evidence for metabolic drift in plant and algal lipid biosynthesis pathways Maëlle Zonnequin,Arnaud Belcour,Ludovic Delage,Anne Siegel,Samuel Blanquartet al. Frontiers in Plant Science, 2024, 15, pp.1339132. ⟨10.3389/fpls.2024.1339132⟩ Article dans une revue (article de synthèse) hal-04473577v1
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe Arnaud Belcour,Jeanne Got,Méziane Aite,Ludovic Delage,Jonas Collénet al. Genome Research, 2023, 33, pp.972 - 987. ⟨10.1101/gr.277056.122⟩ Article dans une revue hal-04192851v3
Identifying genes with conserved splicing structure and orthologous isoforms in human, mouse and dog Nicolas Guillaudeux,Catherine Belleannée,Samuel Blanquart BMC Genomics, 2022, 23 (1), pp.1-14. ⟨10.1186/s12864-022-08429-4⟩ Article dans une revue hal-03616626v1
Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins : Deciphering Gene Trajectories and Changes in Biochemical Properties Samuel Blanquart,Mathieu Groussin,Aline Le Roy,Gergely J Szöllosi,Eric Girardet al. Molecular Biology and Evolution, 2021, 38 (9), pp.3754-3774. ⟨10.1093/molbev/msab146⟩ Article dans une revue hal-03231689v1
Sequence selection by FitSS4ASR alleviates ancestral sequence reconstruction as exemplified for geranylgeranylglyceryl phosphate synthase Kristina Straub,Mona Linde,Cosimo Kropp,Samuel Blanquart,Patrick Babingeret al. Biological Chemistry, 2019, 400 (3), pp.367-381. ⟨10.1515/hsz-2018-0344⟩ Article dans une revue hal-02284913v1
Evolution of the human cold/menthol receptor, TRPM8 Samuel Blanquart,Anne-Sophie Borowiec,Philippe Delcourt,Martin Figeac,Christopher A Emerlinget al. Molecular Phylogenetics and Evolution, 2019, 136, pp.104-118. ⟨10.1016/j.ympev.2019.04.011⟩ Article dans une revue hal-02284919v1
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes Pierre Pericard,Yoann Dufresne,Loïc Couderc,Samuel Blanquart,Hélène Touzet Bioinformatics, 2017, 34 (4), pp.585-591. ⟨10.1093/bioinformatics/btx644⟩ Article dans une revue hal-01646297v2
Assisted transcriptome reconstruction and splicing orthology Samuel Blanquart,Jean-Stéphane Varré,Paul Guertin,Amandine Perrin,Anne Bergeronet al. BMC Genomics, 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786. ⟨10.1186/s12864-016-3103-6⟩ Article dans une revue hal-01396410v1
ProCARs: Progressive Reconstruction of Ancestral Gene Orders Amandine Perrin,Jean-Stéphane Varré,Samuel Blanquart,Aïda Ouangraoua BMC Genomics, 2015, 16 (Suppl 5), pp.S6. ⟨10.1186/1471-2164-16-S5-S6⟩ Article dans une revue hal-01217311v1
Evidence for the Existence of Elaborate Enzyme Complexes in the Paleoarchean Era Bernd Reisinger,Josef Sperl,Alexandra Holinski,Veronika Schmid,Chitra Rajendranet al. Journal of the American Chemical Society, 2014, pp.122-9. ⟨10.1021/ja4115677⟩ Article dans une revue hal-00924047v1
The molecular signal for the adaptation to cold temperature during early life on Earth Mathieu Groussin,Bastien Boussau,Sandrine Charles,Samuel Blanquart,Manolo Gouy Biology Letters, 2013, 9 (5), pp.20130608. ⟨10.1098/rsbl.2013.0608⟩ Article dans une revue hal-00918283v1
Mitochondrial genes support a common origin of rodent malaria parasites and Plasmodium falciparum's relatives infecting great apes Samuel Blanquart,Olivier Gascuel BMC Evolutionary Biology, 2011, 11 (1), pp.70. ⟨10.1186/1471-2148-11-70⟩ Article dans une revue hal-00784426v1
Computational and experimental evidence for the evolution of a (beta alpha)8-barrel protein from an ancestral quarter-barrel stabilised by disulfide bonds. Markus Richter,Manal Bosnali,Linn Carstensen,Tobias Seitz,Helmut Durchschlaget al. Journal of Molecular Biology, 2010, 398 (5), pp.763-73. ⟨10.1016/j.jmb.2010.03.057⟩ Article dans une revue istex hal-00755666v1
Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny. Tiratha Raj Singh,Georgia Tsagkogeorga,Frédéric Delsuc,Samuel Blanquart,Noa Shenkaret al. BMC Genomics, 2009, 10, pp.534. ⟨10.1186/1471-2164-10-534⟩ Article dans une revue halsde-00438100v1
A Site- and Time-Heterogeneous Model of Amino Acid Replacement Samuel Blanquart,Nicolas Lartillot Molecular Biology and Evolution, 2008, 25 (5), pp.842-858. ⟨10.1093/molbev/msn018⟩ Article dans une revue lirmm-00324422v1
Parallel Adaptations to High Temperatures in the Archean Eon Bastien Boussau,Samuel Blanquart,Anamaria Necsulea,Nicolas Lartillot,Manolo Gouy Nature, 2008, 456 (7224), pp.942-945. ⟨10.1038/nature07393⟩ Article dans une revue lirmm-00324159v1
Translational machinery of the chaetognath Spadella cephaloptera: a transcriptomic approach to the analysis of cytosolic ribosomal protein genes and their expression Roxane M. Barthelemy,Anne Chenuil,Samuel Blanquart,Jean-Paul Casanova,Eric Faure BMC Evolutionary Biology, 2007, 7 (1), ⟨10.1186/1471-2148-7-146⟩ Article dans une revue hal-01631361v1
A Bayesian Compound Stochastic Process for Modeling Nonstationary and Nonhomogeneous Sequence Evolution Samuel Blanquart,Nicolas Lartillot Molecular Biology and Evolution, 2006, 23 (11), pp.2058-2071. ⟨10.1093/molbev/msl091⟩ Article dans une revue lirmm-00135037v1

Communication dans un congrès (2)

Reconstruction of full-length 16S rRNA sequences for taxonomic assignment in metagenomics Pierre Pericard,Yoann Dufresne,Samuel Blanquart,Hélène Touzet JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France Communication dans un congrès hal-01574629v1
ProCARs: Progressive Reconstruction of Ancestral Gene Orders Amandine Perrin,Jean-Stéphane Varré,Samuel Blanquart,Aïda Ouangraoua ISCB-Latin America, Oct 2014, Belo Horizonte, Brazil Communication dans un congrès hal-01083841v1

Poster de conférence (5)

Functional Motif Prediction in ADAMTS-TSL proteins Based on Module(s) and Phenotype(s) Co-appearance Olivier Dennler,Samuel Blanquart,François Coste,Catherine Belleannée,Nathalie Théret ALPHY/AIEM 2022 - Rencontres Génomique évolutive, Bioinformatique, Alignement et Phylogénie, Mar 2022, Rennes, France Poster de conférence hal-03870590v1
Machine Learning classification performance on mechanistic representations of the gut microbiota built from abundance profiles Baptiste Ruiz,Arnaud Belcour,Samuel Blanquart,Isabelle Luron Le Huërou-Luron,Sylvie Buffet-Bataillonet al. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2022, Rennes, France. , pp.181, 2022, Proceedings Poster de conférence hal-04155624v1
Phylogenetic Functional Module Characterization of the ADAMTS / ADAMTS like Protein Family Olivier Dennler,Samuel Blanquart,François Coste,Catherine Belleannée,Nathalie Theret JOBIM : Journées Ouvertes en Biologie, Informatique & Mathématiques, Jul 2021, Paris, France Poster de conférence hal-03543182v2
Phylogenetic Functional Module Characterization of the ADAMTS / ADAMTS like Protein Family Olivier Dennler,Samuel Blanquart,François Coste,Catherine Belleannée,Nathalie Theret WABI 2021 - Workshop on Algorithms in Bioinformatics, Aug 2021, Chicago (Online), United States Poster de conférence hal-03543214v1
Predicting isoform transcripts: What does the comparison of known transcripts in human, mouse and dog tell us? Nicolas Guillaudeux,Catherine Belleannée,Samuel Blanquart,Jean-Stéphane Varré JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. 8, pp.1, 2019, ⟨10.7490/f1000research.1117311.1⟩ Poster de conférence hal-02267357v1

Chapitre d'ouvrage (1)

Phylogénie moléculaire Samuel Blanquart,Alexis Criscuolo,Christophe J Douady,Emmanuel Douzery,Nicolas Lartillotet al. Thierry Lefèvre; Michel Raymond; Frédéric Thomas. Biologie évolutive, De Boeck, 2010, 9782804101619 Chapitre d'ouvrage hal-04001134v1

Pré-publication, Document de travail (1)

Estimating consensus proteomes and metabolic functions from taxonomic affiliations Arnaud Belcour,Pauline Hamon-Giraud,Alice Mataigne,Baptiste Ruiz,Yann Le Cunffet al. 2025 Pré-publication, Document de travail hal-03697249v2

Logiciel (1)

MATAM Hélène Touzet,Pierre Pericard,Samuel Blanquart 2018, ⟨swh:1:dir:ad4b9d5ee4ecd6c901731a7e4f79b5481e949f01;origin=https://hal.archives-ouvertes.fr/hal-04454135;visit=swh:1:snp:6f8708c1b9e9a23cdc168fb6d796ff3805d768de;anchor=swh:1:rel:29d4e0794204463094dedf0d0d7c08835360e787;path=/⟩ Logiciel hal-04454135v1