Sandrine Lagarrigue

283

Documents

Presentation

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Publications

	Face au changement climatique, quelles stratégies d’atténuation et d’adaptation pour les productions avicoles ? Anne Collin , Vincent Coustham , Jacob Kokou Tona , Sophie Tesseraud , Sandrine Mignon-Grasteau INRAE Productions Animales, 2024, 37 (1), pp.8069. ⟨10.20870/productions-animales.2024.37.1.8069⟩ Journal articles hal-04575196v1
	Variant calling and genotyping accuracy of ddRAD-seq: Comparison with 20X WGS in layers Mathilde Doublet , Fabien Degalez , Sandrine Lagarrigue , Laetitia Lagoutte , Elise Gueret PLoS ONE, 2024, 19 (7), pp.e0298565. ⟨10.1371/journal.pone.0298565⟩ Journal articles hal-04666242v1
	Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan Scientific Reports, 2024, 14 (1), pp.6588. ⟨10.1038/s41598-024-56705-y⟩ Journal articles hal-04575157v1
	Comparative Genomics and Epigenomics of Transcriptional Regulation Huaijun Zhou , Emily L. Clark , Dailu Guan , Sandrine Lagarrigue , Lingzhao Fang Annual Review of Animal Biosciences, 2024, 14 (1), ⟨10.1146/annurev-animal-111523-⟩ Journal articles hal-04802793v1
	Relationship between feed efficiency and gut microbiota in laying chickens under contrasting feeding conditions Maria Bernard , Alexandre Lecoeur , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet Scientific Reports, 2024, 14 (1), pp.8210. ⟨10.1038/s41598-024-58374-3⟩ Journal articles hal-04538081v1
	GEGA (Gallus Enriched Gene Annotation): an online tool providing genomics and functional information across 47 tissues for a chicken gene-enriched atlas gathering Ensembl and Refseq genome annotations Fabien Degalez , Philippe Bardou , Sandrine Lagarrigue NAR Genomics and Bioinformatics, 2024, 6 (3), pp.lqae101. ⟨10.1093/nargab/lqae101⟩ Journal articles hal-04685713v1
	Epigenetics, genes and the environment: what importance for breeding practices and selection methods in poultry? Vincent Coustham , Charlotte Andrieux , Chloé Cerutti , Anne Collin , Ingrid David INRAE Productions Animales, 2023, 36 (4), pp.7384. ⟨10.20870/productions-animales.2023.36.4.7384⟩ Journal articles hal-04356432v1
	Fourth report on chicken genes and chromosomes 2022 Jacqueline Smith , James Alfieri , Nick Anthony , Peter Arensburger , Giridhar Athrey Cytogenetic and Genome Research, 2023, 162 (8-9), pp.405-528. ⟨10.1159/000529376⟩ Journal articles hal-04217636v1
	LncRNAs in domesticated animals: from dog to livestock species Sandrine Lagarrigue , Matthias Lorthiois , Fabien Degalez , David Gilot , Thomas Derrien Mammalian Genome, 2022, 33 (2), pp.248-270. ⟨10.1007/s00335-021-09928-7⟩ Journal articles hal-03467210v1
	Difference in Pap test uptake between women who have sex with women and other women in France: A comparative survey of 2032 women Camille Poupon , Maud Poirier , Yuna Blum , Sandrine Lagarrigue , Cécile Parléani Preventive Medicine Reports, 2022, 30, pp.101990. ⟨10.1016/j.pmedr.2022.101990⟩ Journal articles hal-03811844v1
	Integrative study of diet-induced mouse models of NAFLD identifies PPARα as a sexually dimorphic drug target Sarra Smati , Arnaud Polizzi , Anne Fougerat , Sandrine Ellero-Simatos , Yuna Blum Gut, 2022, 71 (4), pp.807-821. ⟨10.1136/gutjnl-2020-323323⟩ Journal articles hal-03215969v1
	RNA-Seq Data for Reliable SNP Detection and Genotype Calling Frédéric Jehl , Fabien Degalez , Frédéric Lecerf , Maria Bernard , Laetitia Lagoutte Frontiers in Genetics, 2021, 12, pp.655707. ⟨10.3389/fgene.2021.655707⟩ Journal articles hal-03276149v1
	Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained Fabien Degalez , Frédéric Jehl , Kévin Muret , Maria Bernard , Frédéric Lecerf Frontiers in Genetics, 2021, 12, pp.659287. ⟨10.3389/fgene.2021.659287⟩ Journal articles hal-03280040v1
	An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues Frédéric Jehl , Kévin Muret , Maria Bernard , Morgane Boutin , Laetitia Lagoutte Scientific Reports, 2020, 10 (1), pp.1-17. ⟨10.1038/s41598-020-77586-x⟩ Journal articles hal-03039897v1
	Multi-species annotation of transcriptome and chromatin structure in domesticated animals Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau BMC Biology, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩ Journal articles hal-02437599v1
	Long noncoding RNAs in lipid metabolism: literature review and conservation analysis across species Kévin Muret , Colette Désert , Laetitia Lagoutte , Morgane Boutin , Florence Gondret BMC Genomics, 2019, 20, pp.882. ⟨10.1186/s12864-019-6093-3⟩ Journal articles hal-02387579v1
	Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach Frédéric Jehl , Colette Désert , Christophe Klopp , Mathias Brenet , Andrea Rau BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6384-8⟩ Journal articles hal-02463367v1
	Maternal high-protein and low-protein diets perturb hypothalamus and liver transcriptome and metabolic homeostasis in adult mouse offspring Lisa J. Martin , Qingying Meng , Montgomery Blencowe , Sandrine Lagarrigue , Sheila Xiao Frontiers in Genetics, 2018, 9, ⟨10.3389/fgene.2018.00642⟩ Journal articles hal-01977616v1
	Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis Colette Désert , Elisabeth Baéza , Meziane Aite , Morgane Boutin , Aurélie Le Cam BMC Genomics, 2018, 19 (1), pp.1-19. ⟨10.1186/s12864-018-4520-5⟩ Journal articles hal-01727161v1
	Muscle transcriptome analysis reveals molecular pathways and biomarkers involved in extreme ultimate pH and meat defect occurrence in chicken Stéphane Beauclercq , Christelle Hennequet-Antier , Christophe Praud , Estelle Godet , Anne Collin Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-06511-6⟩ Journal articles hal-01595496v1
	A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs Florence Gondret , Annie Vincent , Magalie Houée-Bigot , Anne Siegel , Sandrine Lagarrigue BMC Genomics, 2017, 18 (1), pp.244. ⟨10.1186/s12864-017-3639-0⟩ Journal articles hal-01494107v1
	Long noncoding RNA repertoire in chicken liver and adipose tissue Kévin Muret , Christophe Klopp , Valentin Wucher , Diane Esquerré , Fabrice Legeai Genetics Selection Evolution, 2017, 49 (1), pp.6. ⟨10.1186/s12711-016-0275-0⟩ Journal articles hal-01431420v1
	Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals Alexandra Montagner , Agata Korecka , Arnaud Polizzi , Yannick Lippi , Yuna Blum Scientific Reports, 2016, 6 (1), pp.1-14. ⟨10.1038/srep20127⟩ Journal articles hal-01482816v1
	The extent of mRNA editing is limited in chicken liver and adipose, but impacted by tissular context, genotype, age and feeding as exemplified with a conserved edited site in COG3 Pierre-François Roux , Laure Fresard , Morgane Boutin , Sophie Leroux , Christophe Klopp G3, 2016, 6 (2), pp.321-335. ⟨10.1534/g3.115.022251⟩ Journal articles hal-01251260v1
	Liver PPARα is crucial for whole-body fatty acid homeostasis and is protective against NAFLD Alexandra Montagner , Arnaud Polizzi , Edwin Fouché , Simon Ducheix , Yannick Lippi Gut, 2016, 65 (7), pp.1202-1214. ⟨10.1136/gutjnl-2015-310798⟩ Journal articles inserm-02339685v1
	Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location Florence Gondret , Annie Vincent , Magalie Houée-Bigot , Anne Siegel , Sandrine Lagarrigue BMC Genomics, 2016, 17 (1), pp.120. ⟨10.1186/s12864-016-2438-3⟩ Journal articles hal-01286555v1
	Thermal manipulation of the chicken embryo triggers differential gene expression in response to a later heat challenge Thomas Loyau , Christelle Hennequet-Antier , Vincent Coustham , Cécile Berri , Marie Leduc BMC Genomics, 2016, 17 (1), 15 p. ⟨10.1186/s12864-016-2661-y⟩ Journal articles hal-02636990v1
	Transcriptomes of whole blood and PBMC in chickens Colette Désert , Elodie Merlot , Tatiana Zerjal , Bertrand Bed'Hom , Sonja Härtle Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2016, 20, pp.1-9. ⟨10.1016/j.cbd.2016.06.008⟩ Journal articles hal-01341819v1
	Expanding Duplication of Free Fatty Acid Receptor-2 (GPR43) Genes in the Chicken Genome C. Meslin , Colette Desert , I. Callebaut , A. Djari , C. Klopp Genome Biology and Evolution, 2015, 7 (5), pp.1332-1348. ⟨10.1093/gbe/evv072⟩ Journal articles hal-01157691v1
	Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates Laure Fresard , Sophie Leroux , Pierre-François Roux , Christophe Klopp , Stéphane Fabre PLoS ONE, 2015, 10 (5), pp.1-20. ⟨10.1371/journal.pone.0126776⟩ Journal articles hal-01207762v1
	Pertinent plasma indicators of the ability of chickens to synthesize and store lipids Elisabeth Baéza , Maëva Jégou , Florence Gondret , J Lalande-Martin , I Tea Journal of Animal Science, 2015, 93 (1), pp.107-116. ⟨10.2527/jas.2014-8482⟩ Journal articles hal-01207761v1
	The ability of genetically lean or fat slow-growing chickens to synthesize and store lipids is not altered by the dietary energy source Elisabeth Baéza , Florence Gondret , Pascal Chartrin , Elisabeth Duval , Cécile Berri Animal, 2015, 9 (10), pp.1643-1652. ⟨10.1017/S1751731115000683⟩ Journal articles hal-01211037v1
	Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation. Pierre-François Roux , Simon Boitard , Anne Blum , Brian Parks , Alexandra Montagner G3, 2015, 5, pp.517-529. ⟨10.1534/g3.115.016865⟩ Journal articles hal-01194040v1
	Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings Pierre-François Roux , Sylvain Marthey , Anis Djari , Marco Moroldo , Diane Esquerre Animal Genetics, 2015, 46 (1), pp.82-86. ⟨10.1111/age.12248⟩ Journal articles hal-01194013v1
	Transcriptome-wide investigation of genomic imprinting in chicken Laure Fresard , Sophie Leroux , Bertrand Servin , David Gourichon , Patrice Dehais Nucleic Acids Research, 2014, 42 (6), pp.3768-3782. ⟨10.1093/nar/gkt1390⟩ Journal articles hal-01019569v1
	The loss of adipokine genes in the chicken genome and implications for insulin metabolism Natasa Dakovic , Morgane Terezol , Frederique Pitel , Virginie Maillard , Sébastien Elis Molecular Biology and Evolution, 2014, 31 (10), pp.2637-2646. ⟨10.1093/molbev/msu208⟩ Journal articles hal-01129850v1
	Dietary energy sources affect the partition of body lipids and the hierarchy of energy metabolic pathways in growing pigs differing in feed efficiency Florence Gondret , Isabelle Louveau , Jacques Mourot , Michel Jacques M.J. Duclos , Sandrine Lagarrigue Journal of Animal Science, 2014, 92 (11), pp.4865-4877. ⟨10.2527/jas.2014-7995⟩ Journal articles hal-01207757v1
	Re-sequencing data for refining candidate genes and polymorphisms in QTL regions affecting adiposity in chicken Pierre-François Roux , Morgane Boutin , Colette Désert , Anis Djari , Diane Esquerre PLoS ONE, 2014, 9 (10), pp.e111299. ⟨10.1371/journal.pone.0111299⟩ Journal articles hal-01207758v1
	Using a large-scale knowledge database on reactions and regulations to propose key upstream regulators of various sets of molecules participating in cell metabolism Pierre Blavy , Florence Gondret , Sandrine Lagarrigue , Jaap J. van Milgen , Anne Siegel BMC Systems Biology, 2014, 8 (1), pp.32. ⟨10.1186/1752-0509-8-32⟩ Journal articles hal-00980499v1
	Farm feed findings Florence Gondret , Sandrine Lagarrigue International innovation - environment, 2013, 08/2013, pp.73-75 Journal articles hal-01210874v1
	Limited RNA editing in exons of mouse liver and adipose Sandrine Lagarrigue , Farhad Hormozdiari , Lisa Martin , Frédéric Lecerf , Yehudit Hasin Genetics, 2013, 193 (4), pp.1107-1115. ⟨10.1534/genetics.112.149054⟩ Journal articles hal-01207749v1
	Genome-wide interval mapping using SNPs identifies new QTL for growth, body composition and several physiological variables in an F-2 intercross between fat and lean chicken lines Olivier Demeure , Michel Jacques M.J. Duclos , Nicola Bacciu , Guillaume Le Mignon , Olivier Filangi Genetics Selection Evolution, 2013, 45, online (september), Non paginé. ⟨10.1186/1297-9686-45-36⟩ Journal articles hal-01207752v1
	Analysis of Allele-Specific Expression in Mouse Liver by RNA-Seq: A Comparison With Cis-eQTL Identified Using Genetic Linkage Sandrine Lagarrigue , Lisa Martin , Farhad Hormozdiari , Pierre-François Roux , Calvin Pan Genetics, 2013, 195 (3), pp.1157-1166. ⟨10.1534/genetics.113.153882⟩ Journal articles hal-01207753v1
	Pleiotropic effects of polymorphism of the gene diacylglycerol-O-transferase 1 (DGAT1) in the mammary gland tissue of dairy cows Núria Mach , Yuna Blum , A. Bannink , David Causeur , M. Houee-Bigot Journal of Dairy Science, 2012, 95 (9), pp.4989-5000. ⟨10.3168/jds.2012-5348⟩ Journal articles hal-00841015v1
	[Emerging key role of cell cycle regulators in cell metabolism] S. Lagarrigue , E. Blanchet , J. S. Annicotte , L. Fajas Médecine/Sciences, 2011, 27 (5), pp.508--13. ⟨10.1051/medsci/2011275016⟩ Journal articles hal-02193321v1
	E2F transcription factor-1 regulates oxidative metabolism E. Blanchet , J. S. Annicotte , S. Lagarrigue , V. Aguilar , C. Clape Nature Cell Biology, 2011, 13 (9), pp.1146--52. ⟨10.1038/ncb2309⟩ Journal articles hal-02193308v1
	Regulation of LPCAT3 by LXR. O. Demeure , Frédéric Lecerf , C. Duby , Colette Désert , S. Ducheix Gene, 2011, 470 (1-2), pp.7-11. ⟨10.1016/j.gene.2010.09.002⟩ Journal articles hal-00729271v1
	Detection of a Cis eQTL Controlling BMCO1 Gene Expression Leads to the Identification of a QTG for Chicken Breast Meat Color Elisabeth Le Bihan-Duval , Javad Nadaf , Cécile Berri , Frederique Pitel , Benoit Graulet PLoS ONE, 2011, 6 (7), non paginé. ⟨10.1371/journal.pone.0014825⟩ Journal articles hal-00729320v1
	Nouvelles approches de phénotypage pour la sélection animale Sandrine Lagarrigue , Michèle Tixier-Boichard INRA Productions Animales, 2011, 24 (4), pp.377-386 Journal articles hal-01189574v1
	Genetically regulated metabolic networks: Gale-Nikaido modules and differential inequalities Ovidiu Radulescu , Anne Siegel , Elisabeth Pecou , Clément Chatelain , Sandrine Lagarrigue Transactions on Computational Systems Biology, 2011, Transactions on Computational Systems Biology XIII, 6575 (Lecture Notes in Computer Science 6575), pp.110-130. ⟨10.1007/978-3-642-19748-2_6⟩ Journal articles inria-00538136v1
	New approaches of phenotyping for animal breeding Sandrine Lagarrigue , M. Tixier-Boichard Productions Animales, 2011, 24 (4), pp.10 Journal articles hal-00730158v1
	Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken Yuna Blum , Guillaume Le Mignon , David Causeur , Olivier Filangi , Colette Désert BMC Genomics, 2011, 12 (november), pp.8. ⟨10.1186/1471-2164-12-567⟩ Journal articles hal-00730144v1
	AnnotQTL: a new tool to gather functional and comparative information on a genomic region Frédéric Lecerc , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Yuna Blum Nucleic Acids Research, 2011, 39 (Suppl 2), open access. ⟨10.1093/nar/gkr361⟩ Journal articles hal-00597398v1
	A factor model to analyze heterogeneity in gene expression. Yuna Blum , Guillaume Le Mignon , Sandrine Lagarrigue , David Causeur BMC Bioinformatics, 2010, 11 (368), pp.368. ⟨10.1186/1471-2105-11-368⟩ Journal articles hal-00729426v1
	Apports de la génomique fonctionnelle à la cartographie fine de QTL Guillaume Le Mignon , Yuna Blum , Olivier Demeure , Christian Diot , Elisabeth Le Bihan-Duval INRA Productions Animales, 2010, 23 (4), pp.343-358 Journal articles hal-00729443v1
	Using transcriptome profiling to characterize QTL regions on chicken chromosome 5 G. Le Mignon , Colette Désert , Frederique Pitel , S. Leroux , O. Demeure BMC Genomics, 2009, 10, non paginé. ⟨10.1186/1471-2164-10-575⟩ Journal articles hal-00730106v1
	Methods for interpreting lists of affected genes obtained in a DNA microarray experiment C. Arce , S. Bicciato , A. Bonnet , B. Buitenhuis , M. Collado-Romero BMC Proceedings, 2009, 3, pp.1-7 Journal articles hal-00730017v1
	Pathway results from the chicken data set using GOTM, Pathway studio and ingenuity softwares Agnès Bonnet , Sandrine Lagarrigue , Laurence Liaubet , Christèle Robert-Granié , Magali San Cristobal BMC Proceedings, 2009, 3 (Suppl 4), pp.1-6. ⟨10.1186/1753-6561-3-S4-S11⟩ Journal articles hal-00730039v1
	CXC ligand 5 is an adipose-tissue derived factor that links obesity to insulin resistance C. Chavey , Gwendal Lazennec , S. Lagarrigue , C. Clape , I. Iankova Cell Metabolism, 2009, 9 (4), pp.339--49. ⟨10.1016/j.cmet.2009.03.002⟩ Journal articles hal-02194094v1
	A comprehensive analysis of QTL for abdominal fat and breast muscle weights on chicken chromosome 5 using a multivariate approach. G. Le Mignon , Frederique Pitel , Hélène Gilbert , Elisabeth Le Bihan-Duval , F. Vignoles Animal Genetics, 2009, 40 (2), pp.157-64. ⟨10.1111/j.1365-2052.2008.01817.x⟩ Journal articles hal-00729933v1
	Methods for interpreting lists of affected genes obtained in a DNA microarray experiment Jakob Hedegaard , Cristina Arce , Silvio Bicciato , Agnès Bonnet , Bart Buitenhuis BMC Proceedings, 2009, 3, online (Suppl.4), Non paginé. ⟨10.1186/1753-6561-3-S4-S5⟩ Journal articles hal-02665629v1
	Liver X receptor alpha regulates fatty acid synthase expression in chicken. O. Demeure , C. Duby , Colette Désert , S. Assaf , Dominique Hazard Poultry Science, 2009, 88 (12), pp.2628-35. ⟨10.3382/ps.2009-00258⟩ Journal articles hal-00730008v1
	Detection of Turkey, Duck, and guinea fowl egg in hen egg products by species-specific PCR Francoise Nau , Colette Désert , Marie-Françoise Cochet , Maryvonne Pasco , Sophie Jan Food Analytical Methods, 2009, 2 (3), pp.231-238. ⟨10.1007/s12161-009-9077-0⟩ Journal articles hal-01454132v1
	A minimal model for hepatic fatty acid balance during fasting: Application to PPAR alpha-deficient mice Pierre Blavy , Florence Gondret , Hervé Guillou , Sandrine Lagarrigue , P.G.P. Martin Journal of Theoretical Biology, 2009, 261 (2), pp.266. ⟨10.1016/j.jtbi.2009.07.025⟩ Journal articles hal-00559147v1
	Swelling kinetics of waxy maize and maize starches at high temperatures and heating rates S. Lagarrigue , G. Alvarez , G. Cuvelier , D. Flick Carbohydrate Polymers, 2008, 73 (1), pp.148-155. ⟨10.1016/j.carbpol.2007.11.018⟩ Journal articles hal-02594873v1
	Transcriptome profiling of the feeding-to-fasting transition in chicken liver. Colette Désert , Michel Jacques M.J. Duclos , Pierre Blavy , Frédéric Lecerf , François Moreews BMC Genomics, 2008, 9 (611), pp.611. ⟨10.1186/1471-2164-9-611⟩ Journal articles hal-00729919v1
	Rheological characterisation of starch based food products under unsteady temperature conditions and high heating rate S. Lagarrigue , G. Alvarez , D. Flick Journal of Food Engineering, 2007, 81, pp.273-281 Journal articles hal-02589548v1
	Qualitative analysis of the relation between DNA microarray data and behavioral models of regulation networks. A. Siegel , O. Radulescu , Mathieu Le Borgne , Philippe Veber , - Ouy J BioSystems, 2006, 84, pp.153-174 Journal articles hal-02656133v1
	Topology and static response of interaction networks in molecular biology Ovidiu Radulescu , Sandrine Lagarrigue , Anne Siegel , Philippe Veber , Michel Le Borgne Journal of the Royal Society Interface, 2006, 3 (6), pp.185 - 196. ⟨10.1098/rsif.2005.0092⟩ Journal articles inria-00178842v1
	Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatness Sandrine Lagarrigue , Frederique Pitel , Wilfrid Carré , Behnam Abasht , Pascale P. Le Roy Genetics Selection Evolution, 2006, 38, pp.85-97 Journal articles hal-02658083v1
	Microarray analysis of differential gene expression in the liver of lean and fat chickens. Emmanuelle Bourneuf , Frédéric Hérault , Céline Chicault , Wilfrid Carré , Sirine Assaf Gene, 2006, 372, pp.162-70. ⟨10.1016/j.gene.2005.12.028⟩ Journal articles hal-00085700v1
	Topology and static response of interaction networks in molecular biology. O. Radulescu , Sandrine Lagarrigue , A. Siegel , Philippe Veber , Mathieu Le Borgne Journal of the Royal Society Interface, 2006, 3, pp.185-196 Journal articles hal-02654772v1
	Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatness Sandrine Lagarrigue , Frederique Pitel , Wilfrid Carré , Behnam Abasht , Pascale Le Roy Genetics Selection Evolution, 2006, 38 (1), pp.85-97 Journal articles hal-00894553v1
	Fatness QTL on chicken chromosome 5 and interaction with sex Behnam Abasht , Frederique Pitel , Sandrine Lagarrigue , Elisabeth Le Bihan-Duval , Pascale P. Le Roy Genetics Selection Evolution, 2006, 38, pp.297-311 Journal articles hal-02661352v1
	Qualitative analysis of the relation between DNA microarray data and behavioral models of regulation networks Anne Siegel , Ovidiu Radulescu , Michel Le Borgne , Philippe Veber , Julien Ouy BioSystems, 2006, 84, pp.153-174 Journal articles inria-00178809v1
	A gene-based radiation hybrid map of chicken microchromosome 14 : comparison to human and alignment to the assembled chicken sequence Mireille Morisson , Sophie S. Leroux , Carine Jiguet-Jiglaire , Sirine Assaf , Frederique Pitel Genetics Selection Evolution, 2005, 37, pp.229-251. ⟨10.1051/gse:2004046⟩ Journal articles hal-02670446v1
	Complex Qualitative Models in Biology: a new approach Philippe Veber , Michel Le Borgne , Anne Siegel , Sandrine Lagarrigue , Ovidiu Radulescu Complexus, 2005, 2, pp.140-151 Journal articles inria-00178819v1
	A high-resolution radiation hybrid map of chicken chromosome 5 and comparison with human chromosomes Frederique Pitel , Behnam Abasht , Mireille Morisson , Richard Pma Crooijmans , Florence F. Vignoles BMC Genomics, 2004, 5, pp.142E-U6. ⟨10.1186/1471-2164-5-66⟩ Journal articles hal-02678290v1
	Genetic linkage and expression analysis of SREBP and lipogenic genes in fat and lean chickens S. Assaf , Sandrine Lagarrigue , Stéphanie Daval , M. Sansom , B. Leclercq Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology, 2004, 137, pp.433-441. ⟨10.1016/j.cbpc.2004.02.005⟩ Journal articles hal-02670700v1
	Cloning of cDNA encoding the nuclear form of chicken sterol response element binding protein-2 (SREBP-2), chromosomal localization, and tissue expression of chicken SREBP-1 and -2 genes S. Assaf , Dominique Hazard , Frederique Pitel , Mireille Morisson , M. Alizadeh Poultry Science, 2003, 82, pp.54-61 Journal articles hal-02670802v1
	Cloning and characterization of HEP21, a new member of the uPAR/Ly6 protein superfamily predominantly expressed in hen egg white F. Nau , C. Guerin-Dubiard , Colette Désert , Joël Gautron , S. Bouton Poultry Science, 2003, 82, pp.242-250 Journal articles hal-02671060v1
	A chicken lipid metabolism macroarray. S. Assaf , Dominique Hazard , Madeleine Douaire , Sandrine Lagarrigue Archiv für Geflügelkunde. Sonderheft, 2002, Special Issue, pp.96 Journal articles hal-02669670v1
	The rheology of starch dispersions at high temperatures and high shear rates: a review S. Lagarrigue , G. Alvarez Journal of Food Engineering, 2001, 50, pp.189-202. ⟨10.1016/S0260-8774(00)00239-9⟩ Journal articles hal-02580048v1
	Development of 112 unique expressed sequence tags from chicken liver using an arbitrarily primed reverse transcriptase-polymerase chain reaction and single strand conformation gel purification method Wilfrid Carré , Christian Diot , R.P.M.A. Crooijmans , Sandrine Lagarrigue , Mark Morrisson Animal Genetics, 2001, 32, pp.289-297 Journal articles hal-02674219v1
	Hepatic lipogenesis gene expression in two experimental egg-laying lines divergently selected on residual food consumption Sandrine Lagarrigue , Stéphanie Daval , André A. Bordas , M. Douaire Genetics Selection Evolution, 2000, 32 (2), pp.205-216 Journal articles hal-02690903v1
	Gènes associés à la lipogénèse chez le poulet M. Douaire , Sandrine Lagarrigue Productions Animales, 2000, HS 2000, pp.169-170 Journal articles hal-02685400v1
	Cloning and mapping of the ACLY gene to a chicken microchromosome Stéphanie Daval , Frederique Pitel , C. Le Nigen , M. Douaire , Alain Vignal Animal Genetics, 2000, 31, pp.404-419 Journal articles hal-02686283v1
	Messenger RNA levels and transcription rates of hepatic lipogenesis genes in genetically lean and fat chickens Stéphanie Daval , Sandrine Lagarrigue , Madeleine Douaire Genetics Selection Evolution, 2000, 32 (5), pp.521-531. ⟨10.1051/gse:2000134⟩ Journal articles hal-00894352v1
	Hepatic lipogenesis gene expression in two experimental egg-laying lines divergently selected on residual food consumption Sandrine Lagarrigue , Stéphanie Daval , André Bordas , Madeleine Douaire Genetics Selection Evolution, 2000, 32 (2), pp.205-216. ⟨10.1051/gse:2000114⟩ Journal articles hal-00894307v1
	Messenger RNA levels and transcription rates of hepatic lipogenesis genes in genetically lean and fat chickens Stéphanie Daval , Sandrine Lagarrigue , M. Douaire Genetics Selection Evolution, 2000, 32 (4), pp.521-531 Journal articles hal-02690958v1
	Role of hepatic lipogenesis in the susceptibility to fatty liver in the goose (Anser anser) Jacques Mourot , Gérard Guy , Sandrine Lagarrigue , P. Peiniau , Dominique D. Hermier Comparative Biochemistry and Physiology Part B: Comparative Biochemistry, 2000, 126, pp.81-87 Journal articles hal-02691295v1
	La stéatose hépatique des palmipèdes gavés : bases métaboliques et sensibilité génétique Dominique D. Hermier , M.R. Salichon , Gérard Guy , Rosaria Peresson , Jacques Mourot Productions Animales, 1999, 12 (4), pp.265-271 Journal articles hal-02697440v1
	L'engraissement chez le poulet : aspects métaboliques et génétiques Fabien Alleman , André A. Bordas , J.P. Caffin , Stéphanie Daval , Christian Diot Productions Animales, 1999, 12 (4), pp.257-264 Journal articles hal-02697188v1
	Mapping of the ME1 locus to chicken chromosome 3. Frederique Pitel , Sandrine Lagarrigue , M. Moro , M. Douaire , Joel Gellin Animal Genetics, 1998, 29 (6), pp.475-476 Journal articles hal-02685474v1
	Analyse génétique d'un caractère quantitatif M. Sourdioux , Sandrine Lagarrigue , M. Douaire Productions Animales, 1997, 10 (3), pp.251-258 Journal articles hal-02693262v1
	Expression of c-fos and jun protooncogenes in ovine trophoblasts in relation to interferon-tau expression and early implantation process F. Xavier , Sandrine Lagarrigue , Michel M. Guillomot , I. Gaillard-Sanchez Molecular Reproduction and Development, 1997, 46, pp.127-137 Journal articles hal-02690401v1
	Apoprotein A1 mRNA levels differ in genetically lean and fat chickens. Stéphanie Daval , Sandrine Lagarrigue , J.P. Caffin , B. Leclercq , Madeleine Douaire Animal Genetics, 1996, suppl. 2, pp.107 Journal articles hal-02693248v1
	Suppression of oncogene-induced transformation by quercetin and retinoic acid in rat liver epithelial cells Sandrine Lagarrigue , Catherine C. Chaumontet , Christine Heberden , Paule Latino-Martel , I. Gaillard-Sanchez Cellular and Molecular Biology Research, 1995, 41 (6), pp.551-560 Journal articles hal-02701405v1
	The transformation of c-jun-overexpressing cells is correlated with IGFS-induced c-jun phosphorylation Sandrine Lagarrigue , Christine Heberden , Paule Latino-Martel , I. Gaillard-Sanchez Biochemical and Biophysical Research Communications, 1995, 217 (2), pp.501-508 Journal articles hal-02700455v1
	Altered response to growth factors in rat epithelial liver cells overexpressing human c-Fos protein Sandrine Lagarrigue , C. Seillan-Heberden , Paule Latino-Martel , I. Gaillard-Sanchez FEBS Letters, 1992, 314 (3), pp.399-403 Journal articles hal-02711271v1

	Étude des réponses moléculaires des embryons de poulet à l'exposition à la chaleur de leur mère Keyvan Karami , Sophie Leroux , Jules Sabban , C. Cerutti , Guillaume Devailly 15. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras (JRAPFG), Mar 2024, Tours, France. pp.204, ⟨10.1016/j.anscip.2024.06.034⟩ Conference papers hal-04700042v1
	Transgenerational response to an endocrine disruptor ingestion : phenotypic, genetic and epigenetic analyses in quail. Stacy Rousse , Sophie Leroux , David Gourichon , Ludovic Calandreau , Tatiana Zerjal EpiPHASE 2024, Oct 2024, Saint Pée sur Nivelle, France Conference papers hal-04770243v1
	A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan 39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. pp.47 Conference papers hal-04217589v1
	A richer gut microbiota is related to better feed efficiency and diet adaptability in laying hens Maria Bernard , Alexandre Lecoeur , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet 74. Annual meeting of the european federation of animal science (EAAP), EAAP, Aug 2023, Lyon, France. pp.740 Conference papers hal-04199104v1
	GEroNIMO : Genome and Epigenome eNabled breedIng in MOnogastrics Frédérique Pitel , Tatiana Zerjal , Sandrine Lagarrigue 74. Annual meeting of the european federation of animal science (EAAP), EAAP; INRAE, Aug 2023, Lyon, France. pp.930 Conference papers hal-04241497v1
	RNA-seq data for detecting reliable SNPs & genotypes in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression ! Frédéric Jehl , Fabien Degalez , Maria Bernard , Frédéric Lecerf , Laetitia Lagoutte World Poultry Congress (WPC) 2022, Aug 2022, Paris, France Conference papers hal-04258396v1
	RNA-SEQ data for reliable SNP detection and genotype calling in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression Frédéric Jehl , Fabien Degalez , Maria Bernard , Frédéric Lecerf , Laetitia Lagoutte 26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.405 Conference papers hal-04132375v1
	Selective sweep mapping in the R+ R-chicken lines divergently selected for RFI (residual feed intake) Frédéric Jehl , Simon Boitard , Jean-Noël Hubert , Denis Laloë , Sandrine Lagarrigue 26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.407 Conference papers hal-03797331v1
	L’épigénétique à l’interface entre l’environnement et l'ADN : quelle importance pour les pratiques d’élevage et les méthodes de sélection ? Vincent Coustham , Charlotte Andrieux , Anne Collin , Ingrid David , Julie Demars 14. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, ITAVI; INRAE; ANSES; WVPA; WPSA; CTCPA, Mar 2022, Tours, France. pp.628-629, ⟨10.1016/j.anscip.2022.05.028⟩ Conference papers hal-03616157v1
	Combined strategies for adapting poultry production to climate change Anne Collin , Vincent Coustham , Jacob Kokou Tona , Sophie Tesseraud , Sandrine Mignon-Grasteau 26. World’s Poultry Congress (WPC), WPSA, Aug 2022, Paris, France. pp.122-146 Conference papers hal-04129464v1
	Epigenetics as a mediator of genome x environment interactions Frederique Pitel , Ingrid David , Julie Demars , Sandrine Mignon-Grasteau , Sandrine Lagarrigue 26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.199-212 Conference papers hal-03797557v1
	FR-Agencode: An Update Elisabetta Giuffra , Sarah Djebali , Andrea Rau , Sandrine Lagarrigue , Hervé Acloque The Plant and Animal Genome XXVII Conference (PAG), Jan 2019, San Diego, United States Conference papers hal-03364351v1
	Integrated metabolomic and transcriptomic analysis evaluating heat and feed stress in layer chickens Denis Laloë , Frédéric Jehl , Colette Désert , Morgane Boutin , Sophie Leroux 37. International Society for Animal Genetics (ISAG) Conference, Jul 2019, Lleida, Spain Conference papers hal-02737948v1
	An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues Frédéric Jehl , Kévin Muret , Maria Bernard , Diane Esquerré , Hervé Acloque PAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States Conference papers hal-02790912v1
	Chromatin accessibility conservation across four livestock species Sarah Djebali Quelen , Sylvain Foissac , Nathalie Vialaneix , Kylie Munyard , Andrea Rau Conference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Llieda, Spain Conference papers hal-02788732v1
	Multi-level conservation of chromosome conformation across livestock species reveals evolutionary links between genome structure and function Sylvain Foissac , Sarah Djebali Quelen , Nathalie Vialaneix , Matthias Zytnicki , Andrea Rau Conference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Lleida, Spain Conference papers hal-02788476v1
	Functional annotation of livestock genomes: chromatin structure and regulation of gene expression Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau ASAS/ASDS Midwest Joint Meeting, Mar 2019, Omaha, United States. ⟨10.1093/jas/skz122.028⟩ Conference papers hal-02735898v1
	Transcriptomics data of liver and adipose tissue highlight lncRNAs as candidates for the lipid metabolism regulation in broilers Kévin Muret , Christophe Klopp , Diane Esquerre , Morgane Boutin , Colette Désert PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States Conference papers hal-01860010v1
	Layers response to a suboptimal diet through phenotype and transcriptome changes in four tissues Frédéric Jehl , M. Brenet , Andrea Rau , Colette Désert , Morgane Boutin 69. Annual Meeting of the European Association of Animal Production, Aug 2018, Dubrovnik, Croatia Conference papers hal-02734608v1
	Le MOOC un nouvel outil pédagogique au service de l’élevage Sandrine Lagarrigue Natural concept. La durabilité des filières animales au cœur des échanges, Dec 2018, Rennes, France Conference papers hal-02270128v1
	Spontaneous intake of essential oils after a negative postnatal experience in chicks and long-term effects on blood transcriptome Laurence A. Guilloteau , Anne Collin , Aline Foury , Jean-Christophe Helbling , Alexia Koch XVth EUROPEAN POULTRY CONFERENCE;EPC2018, Sep 2018, Dubrovnik, Croatia Conference papers hal-02785657v1
	Effect of long-term heat stress on production, egg quality and physiological traits in four experimental lines of layers differing in heat tolerance and feed efficiency Adelie Tholance , Dzidzo Nyuiadzi , Veerle M. Darras , Denis Laloë , Florence Jaffrezic XVth EUROPEAN POULTRY CONFERENCE, Sep 2018, Dubrovnik, Croatia Conference papers hal-02735488v1
	Effect of gut microbiota on production traits, interaction with genetics Hélène Gilbert , Sandrine Lagarrigue , L.M.G. Verschuren , Olivier Zemb , M. Velasco 69. Annual Meeting of the European Association of Animal Production, Aug 2018, Dubrovnik, Croatia. 705 p Conference papers hal-02738445v1
	Profiling the landscape of transcription and chromatin conformation reveals regulatory mechanisms involved in immune and metabolic functions Sylvain Foissac , Sarah Djebali Quelen , Hervé Acloque , Marie-Hélène Pinard-van Der Laan , Sandrine Lagarrigue 3. Journée de Séminaires du Département Phase sur l'Epigénétique EpiPhase, May 2017, Jouy-en-Josas, France Conference papers hal-01603057v1
	Liver and whole blood transcriptome response to chronic heat exposure in laying hens Frédéric Jehl , Andrea Rau , Colette Désert , Morgane Boutin , Kévin Muret 36. International Conference on Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. pp.15 Conference papers hal-02463163v1
	Spontaneous intake of essential oils during the early rearing phase of chicks and long-term effects on performance and transcriptome regulation Laurence A. Guilloteau , Anne Collin , Aline Foury , Jean-Christophe Helbling , Alexia Koch 65. GA Congress. Society for Medicinal Plant and Natural Product Research., Sep 2017, Basel, Switzerland Conference papers hal-01604161v1
	Identification des fonctions biologiques, spécifiques d’un tissu ou partagées entre tissus, associées aux différences d’efficacité alimentaire chez le porc en croissance Florence Gondret , Annie Vincent , Magalie Houee , Anne Siegel , Sandrine Lagarrigue 49. Journées de la Recherche Porcine, Jan 2017, Paris, France. pp.13-18 Conference papers hal-01602699v1
	Effets durables d’un stress post-natal au cours de la vie du poulet d’élevage : recherche de marqueurs par analyse transcriptomique Aline Foury , Jean-Christophe Helbling , Anne Collin , Sabine Crochet , Sandrine Lagarrigue 34. Colloque de la Société de Neuroendocrinologie, Oct 2016, Corte, France Conference papers hal-01603535v1
	Long-lasting effects of thermal manipulation during embryogenesis in broiler chickens Thomas Loyau , Sonia Metayer-Coustard , Cécile Berri , Sandrine Grasteau , Christelle Hennequet-Antier 66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Warsaw, Poland. pp.538 Conference papers hal-01211058v1
	Comparaison des cibles d’une matrice de score et d’une expression régulière. Application à la recherche de sites de fixation du facteur de transcription LXR Aymeric Antoine-Lorquin , Sandrine Lagarrigue , Frédéric Lecerf , Jacques Nicolas , Catherine Belleannée JOBIM 2015- 16e Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France Conference papers hal-01197050v1
	Les métabolites plasmatiques peuvent-ils être des marqueurs du dépôt de gras dans les tissus périphériques chez le poulet ? Maëva Jégou , Isabelle Louveau , Florence Gondret , J Lalande-Martin , Illa Téa 11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France Conference papers hal-01210931v1
	Impact de la source énergétique alimentaire sur les métabolites digestifs microbiens chez le poulet Irène Gabriel , Julie Lalande , Illa Téa , Florence Gondret , Sandrine Lagarrigue 11ème Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France Conference papers hal-01210972v1
	Long-lasting effects of thermal manipulations during embryogenesis in broiler chickens Thomas Loyau , Sonia Metayer-Coustard , Cécile Berri , Sandrine Grasteau , Christelle Hennequet-Antier 66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Varsovie, Poland Conference papers hal-01211070v1
	RNA‐Seq in chicken with two focuses on long non coding RNA modeling (preliminary results) and RNA editing Frederique Pitel , Sandrine Lagarrigue , Kévin Muret , Pierre-François Roux , Laure Fresard Chick meeting du GDR 3604 "Modèle aviaire", Centre National de la Recherche Scientifique (CNRS). FRA., Jun 2015, Paris, France Conference papers hal-01211047v1
	RNA-seq: interests for research Sandrine Lagarrigue 6. Annual meeting of the EFOR Network, réseau EFOR (Etude Fonctionnelle chez les Organismes Modèles). FRA., Mar 2015, Paris, France Conference papers hal-01455880v1
	Sparse factor model for gene co-expression networks Anne Blum , Magalie Houee , Aldons J. Lusis , Sandrine Lagarrigue , David Causeur BioNetVisA Workshop, Sep 2014, Strasbourg, France Conference papers hal-01210988v1
	Transcriptome-wide investigation of genomic imprinting in chicken Laure Fresard , Sophie Leroux , Bertrand Servin , David Gourichon , Patrice Dehais 22. International Plant and Animal Genome (PAG), Jan 2014, San Diego, United States Conference papers hal-01193927v1
	Combining Genetics Mapping, Selective Sweeps, Genome Re-Requencing and Allele Specific Expression Reveals Several Serious Causative Genes for QTL Regions Pierre-François Roux , Simon Boitard , Anis Djari , Diane Esquerre , Colette Désert International Plant & Animal Genome XXII (PAG), Jan 2014, San Diego, United States Conference papers hal-01193794v1
	Métabolites microbiens dans le tractus digestif du poulet. Exemple chez des poulets de status métabolique différent Irène Gabriel , J Lalande , Illa Tea , Florence Gondret , Sandrine Lagarrigue Journées du réseau NEM (Nutrition et Ecosystème Microbien), Apr 2014, Clermont-Ferrand, France Conference papers hal-03365428v1
	Performance, carcass traits and meat quality of genetically fat and lean broilers are unaffected by dietary energy source Elisabeth Baéza , Pascal Chartrin , Anne Collin , Sonia Metayer-Coustard , Cécile Berri 14. European Poultry Conference, Jun 2014, Stavanger, Norway Conference papers hal-01210608v1
	Identification of candidate polymorphism in a QTL region by combining eQTL mapping with NGS data Pierre-François Roux , Yuna Blum , Colette Désert , Anis Djari , Diane Esquerre 64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.300 Conference papers hal-01019609v1
	Utilisation des NGS pour la caractérisation génétique de lignées de poulet de chair et poules de ponte Pierre-François Roux Roux , Frédéric Lecerf , Anis Djari , Diane D. Esquerre , Sylvain S. Marthey 10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France. pp.556-561 Conference papers hal-01000659v1
	Utilisation de SNP pour la cartographie de QTL de croissance, composition de la carcasse et qualité de la viande dans un croisement F2 de lignées de poulet grasse et maigre Olivier Demeure , Michel Jacques M.J. Duclos , Nicola Bacciu , Guillaume Le Mignon , Olivier Filangi 10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France Conference papers hal-01210361v1
	Spécificités évolutives du métabolisme des lipides chez le poulet Philippe Monget , Joëlle Dupont , Elisabeth Baéza , Frederique Pitel , Sandrine Lagarrigue 10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). Nouzilly, FRA. Institut National de la Recherche Agronomique (INRA). Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), FRA., Mar 2013, La Rochelle, France Conference papers hal-01210391v1
	Using NGS data to characterize genetics of meet-type and egg-type chicken lines Pierre-François Roux , Frédéric Lecerf , Anis Djari , Diane Esquerre , Sylvain Marthey 64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.296 Conference papers hal-01019218v1
	Genome-wide interval mapping using SNP identifies new QTL for growth, body composition, meat quality and several physiological parameters in an F2 intercross between Fat and Lean chicken lines Olivier Demeure , Michel Jacques M.J. Duclos , Nicola Bacciu , Guillaume Le Mignon , Olivier Filangi XXI Plant & Animal Genome (PAG), Jan 2013, San Diego, United States Conference papers hal-01210360v1
	Du gène au phénotype - apports de la génomique fonctionnelle Sandrine Lagarrigue Comité thématique avicole AGENAVI, 2012, Paris, France Conference papers hal-01210950v1
	Exploitation à large échelle de bases de données de connaissance sur les réactions et régulations pour trouver des régulateurs clés de groupe de gènes Pierre Blavy , Florence Gondret , Sandrine Lagarrigue , Jaap J. van Milgen , Anne Siegel Journées ouvertes en biologie, informatique et mathématiques, Jul 2012, Rennes, France. pp.161-170 Conference papers hal-01210385v1
	Genetic analysis of a complex trait using transcriptomic data: contribution of gene regulatory network modeling Yuna Blum , Magalie Houée , Chloé Friguet , Sandrine Lagarrigue , David Causeur XX. Conference of the plant & animal genome (PAG), Jan 2012, San Diego, United States. 1 p Conference papers hal-00841103v1
	Apport des NGS à la détection des mutations causales pour des caractères d’intérêt Sandrine Lagarrigue Réunion technique du Sysaaf : Apports des nouvelles technologies pour la sélection aquacole et avicole, Jun 2012, Paris, France Conference papers hal-01210949v1
	Inferring gene networks using a sparse factor model approach Anne Blum , Magalie Houee , Chloé Friguet , Sandrine Lagarrigue , David Causeur Statistical learning and data science, May 2012, Florence, Italy. 12 p Conference papers hal-02806777v1
	Using large scale knowledge database about reactions and regulations to find key regulators of sets of genes Pierre Blavy , Florence Gondret , Sandrine Lagarrigue , Jaap J. van Milgen , Anne Siegel JOBIM 2012, Inria, 2012, Rennes, France. pp.123-132 Conference papers hal-00750512v1
	Inferring gene networks using a sparse factor model approach, Statistical Learning and Data Science Yuna Blum , Magali Houée , Chloé Friguet , Sandrine Lagarrigue , David Causeur Learning and Data Science, May 2012, Florence (IT), Italy Conference papers hal-00841017v1
	Transcriptome-wide investigation of genomic imprinting in chicken Laure L. Fresard , Sophie S. Leroux , David Gourichon , Magali San Cristobal , Nathalie N. Marsaud 33. Conference of the International Society for Animal Genetics, Jul 2012, Cairns, Australia. pp.75 Conference papers hal-01000657v1
	Utilisation de la génétique et de la cartographie génétique pour l’intégration Sandrine Lagarrigue Ecole chercheurs en Biologie Intégrative et Génomique dans le Grand Ouest (BIGOU), Nov 2011, Auray, France Conference papers hal-02802853v1

Sandrine Lagarrigue

Presentation

Research domains

Publications

Face au changement climatique, quelles stratégies d’atténuation et d’adaptation pour les productions avicoles ?

Variant calling and genotyping accuracy of ddRAD-seq: Comparison with 20X WGS in layers

Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues

Comparative Genomics and Epigenomics of Transcriptional Regulation

Relationship between feed efficiency and gut microbiota in laying chickens under contrasting feeding conditions

GEGA (Gallus Enriched Gene Annotation): an online tool providing genomics and functional information across 47 tissues for a chicken gene-enriched atlas gathering Ensembl and Refseq genome annotations

Epigenetics, genes and the environment: what importance for breeding practices and selection methods in poultry?

Fourth report on chicken genes and chromosomes 2022

LncRNAs in domesticated animals: from dog to livestock species

Difference in Pap test uptake between women who have sex with women and other women in France: A comparative survey of 2032 women

Integrative study of diet-induced mouse models of NAFLD identifies PPARα as a sexually dimorphic drug target

RNA-Seq Data for Reliable SNP Detection and Genotype Calling

Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained

An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues

Multi-species annotation of transcriptome and chromatin structure in domesticated animals

Long noncoding RNAs in lipid metabolism: literature review and conservation analysis across species

Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach

Maternal high-protein and low-protein diets perturb hypothalamus and liver transcriptome and metabolic homeostasis in adult mouse offspring

Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis

Muscle transcriptome analysis reveals molecular pathways and biomarkers involved in extreme ultimate pH and meat defect occurrence in chicken

A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Long noncoding RNA repertoire in chicken liver and adipose tissue

Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals

The extent of mRNA editing is limited in chicken liver and adipose, but impacted by tissular context, genotype, age and feeding as exemplified with a conserved edited site in COG3

Liver PPARα is crucial for whole-body fatty acid homeostasis and is protective against NAFLD

Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location

Thermal manipulation of the chicken embryo triggers differential gene expression in response to a later heat challenge

Transcriptomes of whole blood and PBMC in chickens

Expanding Duplication of Free Fatty Acid Receptor-2 (GPR43) Genes in the Chicken Genome

Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates

Pertinent plasma indicators of the ability of chickens to synthesize and store lipids

The ability of genetically lean or fat slow-growing chickens to synthesize and store lipids is not altered by the dietary energy source

Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.

Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings

Transcriptome-wide investigation of genomic imprinting in chicken

The loss of adipokine genes in the chicken genome and implications for insulin metabolism

Dietary energy sources affect the partition of body lipids and the hierarchy of energy metabolic pathways in growing pigs differing in feed efficiency

Re-sequencing data for refining candidate genes and polymorphisms in QTL regions affecting adiposity in chicken

Using a large-scale knowledge database on reactions and regulations to propose key upstream regulators of various sets of molecules participating in cell metabolism

Farm feed findings

Limited RNA editing in exons of mouse liver and adipose

Genome-wide interval mapping using SNPs identifies new QTL for growth, body composition and several physiological variables in an F-2 intercross between fat and lean chicken lines

Analysis of Allele-Specific Expression in Mouse Liver by RNA-Seq: A Comparison With Cis-eQTL Identified Using Genetic Linkage

Pleiotropic effects of polymorphism of the gene diacylglycerol-O-transferase 1 (DGAT1) in the mammary gland tissue of dairy cows

[Emerging key role of cell cycle regulators in cell metabolism]

E2F transcription factor-1 regulates oxidative metabolism

Regulation of LPCAT3 by LXR.

Detection of a Cis eQTL Controlling BMCO1 Gene Expression Leads to the Identification of a QTG for Chicken Breast Meat Color

Nouvelles approches de phénotypage pour la sélection animale

Genetically regulated metabolic networks: Gale-Nikaido modules and differential inequalities

New approaches of phenotyping for animal breeding

Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken

AnnotQTL: a new tool to gather functional and comparative information on a genomic region

A factor model to analyze heterogeneity in gene expression.

Apports de la génomique fonctionnelle à la cartographie fine de QTL

Using transcriptome profiling to characterize QTL regions on chicken chromosome 5

Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

Pathway results from the chicken data set using GOTM, Pathway studio and ingenuity softwares

CXC ligand 5 is an adipose-tissue derived factor that links obesity to insulin resistance

A comprehensive analysis of QTL for abdominal fat and breast muscle weights on chicken chromosome 5 using a multivariate approach.

Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

Liver X receptor alpha regulates fatty acid synthase expression in chicken.

Detection of Turkey, Duck, and guinea fowl egg in hen egg products by species-specific PCR

A minimal model for hepatic fatty acid balance during fasting: Application to PPAR alpha-deficient mice

Swelling kinetics of waxy maize and maize starches at high temperatures and heating rates

Transcriptome profiling of the feeding-to-fasting transition in chicken liver.

Rheological characterisation of starch based food products under unsteady temperature conditions and high heating rate

Qualitative analysis of the relation between DNA microarray data and behavioral models of regulation networks.

Topology and static response of interaction networks in molecular biology

Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatness

Microarray analysis of differential gene expression in the liver of lean and fat chickens.

Topology and static response of interaction networks in molecular biology.

Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatness

Fatness QTL on chicken chromosome 5 and interaction with sex

Qualitative analysis of the relation between DNA microarray data and behavioral models of regulation networks

A gene-based radiation hybrid map of chicken microchromosome 14 : comparison to human and alignment to the assembled chicken sequence