Sandrine Lagarrigue
Présentation
My teaching activities cover different areas of genetics: molecular genetics, genomics, population genetics, quantitative genetics.
My research projects focus on scientific issues related to the regulation of gene expression and its involvement in complex trait variations (particularly those related to lipid metabolism) and in the adaptation of animals to environmental variations. In the last decade, I have strongly invested on the annotation of the chicken genome, in particular on the identification and characterization of long non-coding genes.
These projects combine multiple disciplines (molecular and cell biology, genetics, statistics and informatics) and high-throughput genetic approaches.
Publications
Publications
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Transgenerational response to the ingestion of an endocrine disruptor: phenotypic, genetic, and epigenetic analyses in quailPAG 33, Jan 2026, San Diego, United States |
Combining LD-Guided QTL Refinement, GEGA Annotation, and Tissue-Specific eQTL for Candidate Gene PrioritizationPAG33, Jan 2026, San Deigo, CA,, United States. https://plan.core-apps.com/pag33/abstract/e92da122-9a77-4241-ade6-da7ec88ff7f5 |
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Modelling genetic and epigenetic selection signatures from pool sequencing.Environmental and Agronomical Genomics Symposium, france génomique; greenomics, Feb 2026, Paris, France |
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Transgenerational response to an endocrine disruptor ingestion: phenotypic, genetic and epigenetic analyses in quail76. Annual Meeting of the European Federation of Animal Science (EAAP), Sep 2025, Innsbruck, Austria. pp.624 |
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Empowering Bioinformatics Communities with nf-core: The success of an open-source bioinformatics ecosystemIntelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom |
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The impact of chronic heat stress on DNA methylation and gene expression in laying hens76. Annual Meeting of the European Federation of Animal Science (EAAP), EAAP, Aug 2025, Innsbrück, Austria. pp.623 |
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Étude des réponses moléculaires des embryons de poulet à l'exposition à la chaleur de leur mère15. Journées de la Recherche Avicole et Palmipèdes à Foie Gras (JRAPFG), Mar 2024, Tours, France. pp.204, ⟨10.1016/j.anscip.2024.06.034⟩ |
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Adaptation au changement climatique chez les volaillesRéunion du groupe Filière Cunicole, INRAE, Nov 2024, Paris, France |
Transgenerational response to an endocrine disruptor ingestion : phenotypic, genetic and epigenetic analyses in quail.EpiPHASE 2024, Oct 2024, Saint Pée sur Nivelle, France |
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A richer gut microbiota is related to better feed efficiency and diet adaptability in laying hens74. Annual meeting of the european federation of animal science (EAAP), EAAP, Aug 2023, Lyon, France. pp.740 |
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A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. pp.47 |
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GEroNIMO : Genome and Epigenome eNabled breedIng in MOnogastrics74. Annual meeting of the european federation of animal science (EAAP), EAAP; INRAE, Aug 2023, Lyon, France. pp.930 |
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RNA-SEQ data for reliable SNP detection and genotype calling in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.405 |
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Combined strategies for adapting poultry production to climate change26. World’s Poultry Congress (WPC), WPSA, Aug 2022, Paris, France. pp.122-146 |
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L’épigénétique à l’interface entre l’environnement et l'ADN : quelle importance pour les pratiques d’élevage et les méthodes de sélection ?14. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, ITAVI; INRAE; ANSES; WVPA; WPSA; CTCPA, Mar 2022, Tours, France. pp.628-629, ⟨10.1016/j.anscip.2022.05.028⟩ |
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Selective sweep mapping in the R+ R-chicken lines divergently selected for RFI (residual feed intake)26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.407 |
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Epigenetics as a mediator of genome x environment interactions26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.199-212 |
RNA-seq data for detecting reliable SNPs & genotypes in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression !World Poultry Congress (WPC) 2022, Aug 2022, Paris, France |
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Integrated metabolomic and transcriptomic analysis evaluating heat and feed stress in layer chickens37. International Society for Animal Genetics (ISAG) Conference, Jul 2019, Lleida, Spain |
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Chromatin accessibility conservation across four livestock speciesConference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Llieda, Spain |
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An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissuesPAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States |
FR-Agencode: An UpdateThe Plant and Animal Genome XXVII Conference (PAG), Jan 2019, San Diego, United States |
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Functional annotation of livestock genomes: chromatin structure and regulation of gene expressionASAS/ASDS Midwest Joint Meeting, Mar 2019, Omaha, United States. ⟨10.1093/jas/skz122.028⟩ |
Multi-level conservation of chromosome conformation across livestock species reveals evolutionary links between genome structure and functionConference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Lleida, Spain |
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Effect of long-term heat stress on production, egg quality and physiological traits in four experimental lines of layers differing in heat tolerance and feed efficiencyXVth EUROPEAN POULTRY CONFERENCE, Sep 2018, Dubrovnik, Croatia |
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Le MOOC un nouvel outil pédagogique au service de l’élevageNatural concept. La durabilité des filières animales au cœur des échanges, Dec 2018, Rennes, France |
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Spontaneous intake of essential oils after a negative postnatal experience in chicks and long-term effects on blood transcriptomeXVth EUROPEAN POULTRY CONFERENCE;EPC2018, Sep 2018, Dubrovnik, Croatia |
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Layers response to a suboptimal diet through phenotype and transcriptome changes in four tissues69. Annual Meeting of the European Association of Animal Production, Aug 2018, Dubrovnik, Croatia |
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Effect of gut microbiota on production traits, interaction with genetics69. Annual Meeting of the European Association of Animal Production, Aug 2018, Dubrovnik, Croatia. 705 p |
Transcriptomics data of liver and adipose tissue highlight lncRNAs as candidates for the lipid metabolism regulation in broilersPAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States |
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Profiling the landscape of transcription and chromatin conformation reveals regulatory mechanisms involved in immune and metabolic functions3. Journée de Séminaires du Département Phase sur l'Epigénétique EpiPhase, May 2017, Jouy-en-Josas, France |
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Liver and whole blood transcriptome response to chronic heat exposure in laying hens36. International Conference on Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. pp.15 |
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Spontaneous intake of essential oils during the early rearing phase of chicks and long-term effects on performance and transcriptome regulation65. GA Congress. Society for Medicinal Plant and Natural Product Research., Sep 2017, Basel, Switzerland |
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Identification des fonctions biologiques, spécifiques d’un tissu ou partagées entre tissus, associées aux différences d’efficacité alimentaire chez le porc en croissance49. Journées de la Recherche Porcine, Jan 2017, Paris, France. pp.13-18 |
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Effets durables d’un stress post-natal au cours de la vie du poulet d’élevage : recherche de marqueurs par analyse transcriptomique34. Colloque de la Société de Neuroendocrinologie, Oct 2016, Corte, France |
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Long-lasting effects of thermal manipulation during embryogenesis in broiler chickens66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Warsaw, Poland. pp.538 |
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Comparaison des cibles d’une matrice de score et d’une expression régulière. Application à la recherche de sites de fixation du facteur de transcription LXRJOBIM 2015- 16e Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France |
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Long-lasting effects of thermal manipulations during embryogenesis in broiler chickens66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Varsovie, Poland |
RNA‐Seq in chicken with two focuses on long non coding RNA modeling (preliminary results) and RNA editingChick meeting du GDR 3604 "Modèle aviaire", Centre National de la Recherche Scientifique (CNRS). FRA., Jun 2015, Paris, France |
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RNA-seq: interests for research6. Annual meeting of the EFOR Network, réseau EFOR (Etude Fonctionnelle chez les Organismes Modèles). FRA., Mar 2015, Paris, France |
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Les métabolites plasmatiques peuvent-ils être des marqueurs du dépôt de gras dans les tissus périphériques chez le poulet ?11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France |
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Impact de la source énergétique alimentaire sur les métabolites digestifs microbiens chez le poulet11ème Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France |
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Sparse factor model for gene co-expression networksBioNetVisA Workshop, Sep 2014, Strasbourg, France |
Transcriptome-wide investigation of genomic imprinting in chicken22. International Plant and Animal Genome (PAG), Jan 2014, San Diego, United States |
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Combining Genetics Mapping, Selective Sweeps, Genome Re-Requencing and Allele Specific Expression Reveals Several Serious Causative Genes for QTL RegionsInternational Plant & Animal Genome XXII (PAG), Jan 2014, San Diego, United States |
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Métabolites microbiens dans le tractus digestif du poulet. Exemple chez des poulets de status métabolique différentJournées du réseau NEM (Nutrition et Ecosystème Microbien), Apr 2014, Clermont-Ferrand, France |
Performance, carcass traits and meat quality of genetically fat and lean broilers are unaffected by dietary energy source14. European Poultry Conference, Jun 2014, Stavanger, Norway |
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Utilisation de SNP pour la cartographie de QTL de croissance, composition de la carcasse et qualité de la viande dans un croisement F2 de lignées de poulet grasse et maigre10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France |
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Transcriptome-wide investigation of genomic imprinting in chicken33. Conference of the International Society for Animal Genetics, Jul 2012, Cairns, Australia. pp.75 |
Genome-wide interval mapping using SNP identifies new QTL for growth, body composition, meat quality and several physiological parameters in an F2 intercross between Fat and Lean chicken linesXXI Plant & Animal Genome (PAG), Jan 2013, San Diego, United States |
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Utilisation des NGS pour la caractérisation génétique de lignées de poulet de chair et poules de ponte10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France. pp.556-561 |
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Identification of candidate polymorphism in a QTL region by combining eQTL mapping with NGS data64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.300 |
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Spécificités évolutives du métabolisme des lipides chez le poulet10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). Nouzilly, FRA. Institut National de la Recherche Agronomique (INRA). Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), FRA., Mar 2013, La Rochelle, France |
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Using NGS data to characterize genetics of meet-type and egg-type chicken lines64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.296 |
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Exploitation à large échelle de bases de données de connaissance sur les réactions et régulations pour trouver des régulateurs clés de groupe de gènesJournées ouvertes en biologie, informatique et mathématiques, Jul 2012, Rennes, France. pp.161-170 |
Using large scale knowledge database about reactions and regulations to find key regulators of sets of genesJOBIM 2012, Inria, 2012, Rennes, France. pp.123-132 |
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Inferring gene networks using a sparse factor model approachStatistical learning and data science, May 2012, Florence, Italy. 12 p |
Apport des NGS à la détection des mutations causales pour des caractères d’intérêtRéunion technique du Sysaaf : Apports des nouvelles technologies pour la sélection aquacole et avicole, Jun 2012, Paris, France |
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Inferring gene networks using a sparse factor model approach, Statistical Learning and Data ScienceLearning and Data Science, May 2012, Florence (IT), Italy |
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Transcriptome profiling reveals interaction between two QTL for fatness in chicken15th European workshop on QTL mapping and marker assisted selection (QTLMAS), May 2011, Rennes (FR), France. 1 p |
Genetic analysis of a complex trait using transcriptomic data: contribution of gene regulatory network modelingXX. Conference of the plant & animal genome (PAG), Jan 2012, San Diego, United States. 1 p |
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LXRa : un gène candidat positionnel et fonctionnel pour un QTL d'engraissement chez le poulet de chair ?Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France |
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Du gène au phénotype - apports de la génomique fonctionnelleComité thématique avicole AGENAVI, 2012, Paris, France |
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A new method for modeling reactions and regulations to analyze high-throughout data4. International Symposium on Animal Functional Genomics, Sorcha De Gras; Sorcha De Gras, Oct 2011, Dublin, Ireland |
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Large-scale significance testing of high thoroughput Data with FAMT14. Conference of the Applied Stochastic Models and Data Analysis International Society, Jun 2011, Rome, Italy |
Effect of the gene diacylglycerol-O-transferase 1 (DGAT1) polymorphism on the global expression pattern of genes in the mammary gland tissue of dairy cows62. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2011, Stavanger, Norway |
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Utilisation de la génétique et de la cartographie génétique pour l’intégrationEcole chercheurs en Biologie Intégrative et Génomique dans le Grand Ouest (BIGOU), Nov 2011, Auray, France |
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AnnotQTL: a new tool to gather functional and comparative information on a genomic region15th QTLMAS, Institut National de Recherche Agronomique (INRA). UMR Génétique Animale (0598)., May 2011, Rennes, France |
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Integrating QTL controlling fatness, lipid metabolites and gene expressions to genetically dissect the adiposity complex trait in a meat chicken cross62. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2011, Stavanger, Norway |
La génomiqueSéminaire de la société ALLTECH, 2010, Rennes, France |
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Gene assisted selection for meat color in the chicken9. World Congress on genetics Applied to Livestock Production, Aug 2010, Leipzig, Germany |
Introduction aux concepts et outils de la génétique et génomiqueJournée thématique "génomique", Association de Coordination Technique Agricole (ACTA). FRA., Jan 2010, Paris, France |
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Intérêts de la génomique dans les filières animalesJournée de formation, Cooperl Arcatlantique. FRA., 2010 |
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A la croisée de la génomique positionnelle et fonctionnelle : application à l'identification d'une mutation chez le poulet et perspectives de recherches en qualité de la viande13. Journées "Sciences du Muscle et Technologies des Viandes", Oct 2010, Clermont-Ferrand (FR), France. pp.201-207 |
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Inférence sur réseaux géniques par Analyse en Facteurs42èmes Journées de Statistique, 2010, Marseille, France, France |
A la croisée de la génomique positionnelle et fonctionnelle : application à l'identification d'une mutation chez le poulet et perspectives de recherches en qualité de la viande13. Journées Sciences du Muscle et Technologies des Viandes, Oct 2010, Clermont-Ferrand, France |
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A factor model to analyze heterogeneity in gene expression in a context of QTL mapping8th workshop " Statistical Methods for Post-Genomic Data ", Jan 2010, Marseille, France |
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Recherche de QTL responsables de l'engraissement chez le poulet2. Rencontres annuelles de génomique avicole, Nov 2009, Paris, France |
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Utilisation du transcriptome pour préciser la localisation d'un QTL responsable de la variabilité d'engraissement chez le poulet de chairHuitièmes Journées de la Recherche Avicole, Mar 2009, Paris (FR), France |
Génomique : réalisation et perspectives8èmes Journées de la Recherche Avicole, Mar 2009, Paris (FR), France. pp.547-554 |
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Génomique : réalisation et perspectives8. Journées de la Recherche Avicole, Mar 2009, Saint-Malo, France |
Utilisation du transcriptome pour préciser la localisation d'un QTL responsable de la variabilité d'engraissement chez le poulet de chair.8. Journées de la Recherche Avicole, Mar 2009, Saint-Malo, France |
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eQTL Mapping allows to refine abdominal fatness QTL in chickenPlant & Animal Genomes, XVI Conference, Jan 2008, San Diego (US), United States |
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Pathway results from the chicken data set using several softwaresEADGENE and SABRE Post-Analyses, Animal Sciences Group, Nov 2008, Lelystad (NL), Netherlands |
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Intérêt de l'approche eQTL pour l'identification de gènes responsables de la variabilité de caractères quantitatifsJournées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France |
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Eléments de compréhension de la génétique et génomique dans le contexte de la sélection animaleSéminaire génomique Bioporc, Nov 2008, Rennes, France |
Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotidesJournées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France |
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Pathway results from the chicken data set using several softwaresEADGENE and SABRE Post-Analyses, Animal Sciences Group, 2008, Lelystad, Netherlands |
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A minimal and dynamic model for fatty acid metabolism in mouse liverJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2008, Lille (FR), France |
Intérêt de l'approche eQTL pour l'identification de gènes responsables de la variabilité de caractères quantitatifs.Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau |
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LXRa : un gène candidat positionnel et fonctionnel pour un QTL d'engraissement chez le poulet de chair ?Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau |
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A minimal and dynamical model for fatty acid metabolism in mouse liverJournées Ouvertes Biologie Informatique Mathématiques, 2008, Lille, France. pp.Inconnu |
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Eléments de compréhension de la génétique et génomique dans le contexte de la sélection animaleSéminaire Génomique, Jul 2008, Paris, France |
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Modélisation multi-organes et multi-espèces du métabolisme des lipides2. Journées d'Animation Scientifique du Département PHASE, Oct 2007, Tours, France |
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Localisation de QTL contrôlant les poids de gras abdominal et de filet sur le chromosome 5 du poulet7. Journées de la Recherche Avicole, Mar 2007, Tours, France |
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Intérêt de l’approche eQTL (QTL d’expression) pour l’identification de gènes responsables de la variabilité de caractères quantitatifsSéminaire AGENAE/GENANIMAL 2007, Oct 2007, Paris, France |
Mapping male-specific fatness QTL at the distal part of chicken chromosome 5.XII European Poultry Conference (EPC), 10-14 september 2006, Sep 2006, Verona, pp.Inconnu |
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Advanced backcross generations allowed refining sex-specific fatness QTL regions in a polygenic chicken model of fatness.Stadler Genetics Symposium Genomics of Disease, October 2-4, 2006, Columbia, pp.Inconnu |
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Sex by fatness QTL interaction with transgressive variation in fat and lean lines.Gordon Conference on Quantitative Genetics and Genomics, 2005, Ventura, pp.Inconnu |
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Former pour l'amélioration génétique : questions anciennes et nouveaux défis.12èmes Rencontres Recherches Ruminants, Dec 2005, Paris, France |
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Différential gene expression in the liver of lean and fat chickens4th European Poultry Genetics Symposium, Oct 2005, Dubrovnik, Croatia |
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Extraction d'information appliquée au domaine biomédical : apprentissage et traitement automatique de la langueConférence internationale de fouille de texte, CIFT-04, Jun 2004, La Rochelle, France |
Characterisation of quantitative trait loci affecting fatness on chicken chromosome 522. World's Poultry Congress, Jun 2004, Istanbul, Turkey |
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Event-based Information Extraction for the biomedical domain: the Caderige projectProceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and Its Applications (COLING'04), 2004, Geneva, Switzerland. pp.43-49 |
A functional approach to fattening in chickensSpring Meeting of the WPSA French Branch, Mar 2003, Tours, France. pp.793-794, ⟨10.1080/00071660410001666826⟩ |
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Identification de QTL pour l'état d'engraissement et le poids de filet chez le poulet de chair.5èmes Journées de la Recherche Avicole, 2003, Tours, France |
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Identification of 3 new minor hen egg white proteins16. European Symposium on the Quality of Poultry Meat & 10. European Symposium on the Quality of Eggs and Egg Products, Sep 2003, Saint Brieuc - Ploufragan, France |
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Approche transcriptomique de l'engraissement chez le poulet de chair5. Journées de la Recherche Avicole, Mar 2003, Tours, France |
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Analyse du transcriptome de poule (Gallus) ; profil d'expression des ARNm de différents tissus et analyse du métabolisme des lipides.Colloque Génomique des animaux d'élevage, Seignosse-le-Penon, May 2003, Seignosse-le-Peignon, France |
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An initial QTL scan for abdominal fatness and breast muscle weight in broiler chickens.Plant and Animal Genome XI Conference, San Diego, Jan 2003, California, pp.Inconnu |
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A two-step procedure for fat QTL identification in meat-type chickens7. World Congress on Genetics Applied to Livestock Production, Aug 2002, Montpellier, France |
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Comportement rhéologique évolutif de suspensions d'amidon soumises à des cinétiques rapides de température et de cisaillementJournée Jeunes Chercheurs UMR GENIAL, INAPG, 11 juin 2002, 2002, France. pp.1 |
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A chicken lipid metabolism macroarray.11th European Poultry Conference, Sep 2002, Bremen, Germany |
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Gradient de température radial dans un écoulement de Couette lors de cinétiques de températureJournée Jeunes Chercheurs UMR GENIAL, ENSIA, 2001, 2001, France. pp.1 |
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Lipogenesis genes and fatness in the chicken.27th International Conference on Animal Genetics, Jul 2000, Minnesota, United States |
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Activité transcriptionnelle de genes impliqués dans le métabolisme des lipides chez des lignées grasse et maigre de poulet3. Journées de la recherche avicole, Mar 1999, Saint-Malo, France |
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Analyse fonctionnelle de gènes du métabolisme des lipides et association génétique avec l'état d'engraissement : deux analyses génétiques complémentaires d'un caractère quantitatif3. Journées de la recherche avicole, Mar 1999, Saint-Malo, France |
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Gènes associés à la lipogénèse chez le pouletSéminaire du département de génétique animale, Sep 1999, Cap d'Agde, France |
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Analysis of genetical association between lipogenic genes and fatness in R+/Regg-laying lines10. European poultry conference, Jun 1998, Jerusalem, Israel |
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Lipogenesis gene expression in divergently selected lean and fat chickens10. European Poultry Congress, Jun 1998, Jérusalem, Israel |
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Lipogenic gene expression in divergently selected egg-laying lines on residual food consumption10. European Poultry Congress, Jun 1998, Jérusalem, Israel |
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Comparison of liver lipogenic mRNA levels between two breeds of geese with different abilities to hepatic steatosis11. European symposium, Sep 1997, Nantes, France |
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Les insulin-like growth factors modifient l'état de phosphorylation de la protéine c-jun4. Colloque de Biomatec, Mar 1996, Paris, France |
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Suppression of oncogene-induced transformation by quercetin and retinoic acid in rat liver epithelial cells2. International congress, May 1996, Ede, Netherlands |
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Apoprotein A1 mRNA levels differ in genetically lean and fat chickens.XXV International Conference on Animal Genetics, Jul 1996, Tours, France |
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Active proliferation of adult chicken hepatocytes ex vivo40. Meeting of the European Tissue Culture Society, Jul 1993, Rennes, France |
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Genetic and epigenetic selection signatures from pool sequencing expeimentEpigenetic inheritance symposium, Aug 2025, Zurich, Switzerland |
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Genetic and epigenetic selection signatures from pool sequencing experimentBiology of genomes, May 2025, Cold Spring Harbor (NY), United States |
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Modelling genetic and epigenetic selection signatures from pool sequencingEpiphase, Nov 2025, Toulouse, France |
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Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore TechnologyInternational congress in Ecology and Evolution, Oct 2024, Lyon, France |
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Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore TechnologyEnvironmental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. , pp.118, Book of abstracts |
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Transgenerational response to endocrine disruptor : phenotypic, genotypic and epigenotypic analyses in quailEnvironmental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. , pp.128, 2024, Book of abstracts |
LncRNA analysis in response to diet changes in broiler chickens39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. , pp.74, 2023, Abstracts |
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A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. , pp.78, 2023, Abstracts |
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The richer the better: 16S metabarcoding analysis of gut microbiota of laying hens in relation to feed efficiency and adaptation to diet change13. International Gut Microbiology Symposium 2023, Jun 2023, Aberdeen, United Kingdom. , 2023, Programme and book of abstracts |
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The evolution of epigenetics across multiple generationsEpigenetic inheritance symposium, Aug 2023, Zurich, Switzerland. 2023 |
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Genetic architecture of the persistency of production, quality, and efficiency traits in laying hens74. Annual meeting of the european federation of animal science (EAAP), Aug 2023, Lyon, France. Wageningen Academic Publishers, Book of abstracts, 29, pp.812, 2023, Book of abstracts of the 74th annual meeting of the european federation of animal science |
Investigating the molecular responses of chicken embryos to their mothers heat stress using DNA methylationEpigenetic inheritance symposium, Aug 2023, Zurich, Switzerland. 2023 |
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Influence of early rearing system on later performance of commercial laying hens74. Annual meeting of the european federation of animal science (EAAP), Aug 2023, Lyon, France. Wageningen Academic Publishers, Book of abstracts, 29, pp.418, 2023, Book of abstracts of the 74th annual meeting of the european federation of animal science |
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Gene orthology detection for long noncoding RNA (lncRNA)39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. , pp.61, 2023, Abstracts |
Variant calling and genotyping accuracy of ddRAD-seq: comparison with WGS in layers74. Annual meeting of the european federation of animal science (EAAP), Aug 2023, Lyon, France. Wageningen Academic Publishers, Book of abstracts, 29, pp.796, 2023, Book of abstracts of the 74th annual meeting of the european federation of animal science |
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L’évolution de l’épigénétique au cours de plusieurs générations de sélectionEpiPhase, Oct 2023, Jouy en Josas, France |
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A lncRNA gene-enriched atlas for GRCg7b chicken genome using Ensembl, RefSeq and two FAANG databases74. Annual meeting of the european federation of animal science (EAAP), Aug 2023, Lyon, France. Wageningen Academic Publishers, Book of abstracts, 29, pp.932, 2023, Book of abstracts of the 74st annual meeting of the european federation of animal science |
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Impact of host genetics and abiotic stresses on caecal microbiota composition in four different laying hen lines?Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France |
Gene orthology detection for Long Non Coding RNA (LncRNA)Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2022, Rennes, France. , pp.71, Proceedings |
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Evaluate the impact of abiotic stressors (heat and suboptimal diet) on the gut microbiota of two chicken lines diverging in feed efficiency, using the 16S rRNA high throughput sequence technologyJOBIM 2020, Jun 2020, Montpellier, France. |
Layers response to suboptimal diet through phenotypic and transcriptomic changes in four tissuesPAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States. , 2019 |
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Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomesEuropean Conference on Computational Biology (ECCB 2018), Sep 2018, Athènes, Greece. , 2018 |
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Consommation spontanée d'huiles essentielles pendant la phase de démarrage du poussin de chair et effets à long terme sur la performance et le transcriptome sanguinJournées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. , 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés |
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Recherche de régions génomiques responsables du diabète insipide et de la couleur de la coquille celadon chez la Caille japonaise par RADseq12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 12, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras |
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Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
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Liver and whole blood transcriptome response to chronic heat exposure in laying hens36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, Proceedings of the 36th International Conference on Animal Genetics |
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Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
Une nouvelle facette du génome de poule : les genes “longs non-codants12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras |
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Phenotype and multi-tissue transcriptome response to diet changes in laying hens36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
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Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
Long-non coding RNAs repertoire in liver and adipose tissue in chickenXXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016 |
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THERMOCHICK : Acclimatation embryonnaire à la chaleur. Quels sont les mécanismes modifiés chez le poulet de chair en finition ?Journées du Métaprogramme ACCAF, Mar 2016, Marne-La-Vallée, France. 2016 |
La combinaison de cartographie de signatures de sélection, de re-séquençage de génomes et d'analyses d'expression révèle PARK2 et JAG2 comme nouveaux genes candidats régulant l'adiposité11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2015, Journées de la Recherche Avicole et Palmipèdes à Foie Gras |
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Contributions des transcriptomes du foie, tissu adipeux et muscle aux mécanismes d'adaptation des poulets de chair face à une variation de la source d'énergie dans l'aliment11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2015, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras |
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Integrative responses of pig adipose tissues to high-fat high-fiber diet: towards key regulators of energy flexibilityASAS/ADSA midwest meeting, Mar 2015, Des Moines, United States. Journal of Animal Science, 93 (Suppl. 2), 2015, Abstract book of the ASAS/ADSA midwest meeting |
Acclimatation embryonnaire à la chaleur : quels sont les mécanismes moléculaires modifiées chez le poulet de chair en finition ?11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. ITAVI, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2015, Journées de la Recherche Avicole et Palmidèdes à Foie Gras |
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La capacité de stockage des lipides par des poulets maigres ou gras n'est pas influencée par la source d'énergie de l'aliment11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2015, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras |
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Age effect on liver trascriptome in chicken lines selected for residual feed consumption14. European Poultry Conference, Jun 2014, Stavanger, Norway. , 2014 |
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The R package FANet: sparse factor analysis model for high dimensional gene co-expression networksThe International R Users Conference, Jun 2014, Los Angeles, United States. 2014, UserR contributed abstracts |
Long-lasting effects of thermal manipulation during embryogenesis on muscle gene expression profile in fast-growing chickens.14. European Poultry Conference, Jun 2014, Stavanger, Norway. WPSA, Branche Norvégienne, 2014, 14. European Poultry Conference |
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Can plasma metabolites predict fat deposition in peripheral tissues of chicken?14. European Poultry Conference, Jun 2014, Stavanger, Norway. WPSA, Branche Norvégienne, 2014, XIVTH EUROPEAN POULTRY CONFERENCE |
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Selective sweeps using hapFLK combined with genome re-sequencing data reveals strong candidate mutations in QTL regions in divergent chicken lines8th European Symposium on Poultry Genetics (ESPG), Sep 2013, Venise, Italy. 2013, Proceedings of the 8th European Symposium on Poultry Genetics |
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Genome-wide transcriptomic analysis of liver from chicken lines selected for residual feed consumption8. European Symposium on Poultry Genetics (ESPG), Sep 2013, Venise, Italy. 2013, Proceedings of the 8th European Symposium on Poultry Genetics |
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Y a-t-il de l'empreinte chez la poule ?10. Journées de la Recherche Avicoles et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France. pp.551-555, 2013 |
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Analysis of allele specific expression in mouse liver by RNA-Seq63. Annual Meeting of the Amercian Society of Human Genetics (ASHG), Oct 2013, Boston, United States. , 2013, Poster book |
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AnnotQTL: a new tool to gather functional and comparative information on a genomic region12. Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2011, JOBIM 2011 |
Genome-Wide QTL detection for growth, body composition and quality related traits in chickenXXXII International Conference on Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics |
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A factor model to analyse heterogeneity in gene expression in a context of QTL characterizationXXXII International Conference on Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics |
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Transcriptome profiling reveals interaction between two QTL for fatness in chickenXXXII International Conference on Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics |
Contribution to the annotation of the chicken 20K oligo microarray of ARK-genomicsPlant & Animal Genomes, XVI Conference, Jan 2008, San Diego (US), United States. , 2008 |
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eQTL Mapping allows to refine abdominal fatness QTL in chickenPlant & Animal Genomes, XVI Conference, Jan 2008, Inconnu, , 2008 |
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Qualitative, integrated modeling of lipid metabolism in hepatocytes7th International Conference on Systems Biology - Yokohama, 2006, Japan. pp.Inconnu, 2006 |
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Réseaux d'ADNc pour l'analyse du transcriptome des animaux d'élevageSéminaire des programmes INRA de génomique animale, végétale et des microorganismes, Dec 2004, Paris, France. 2004 |
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Elaboration d'une puce à ADN en vue d'étudier la régulation du métabolisme hépatique des lipides chez le poulet.5. Journées de la Recherche Avicole, Mar 2003, Tours, France. 2003, 5èmes Journées de la Recherche Avicole |
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Lipogenic gene expression and genetic association with fatness in broiler chicken lines.11th European Poultry Conference, 2002, Bremen, Germany. pp.Inconnu, 2002 |
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Expression and genetic association of SREBP and lipogenesis genes for effects on fatness in broiler chicken lines11th European Poultry Conference, Sep 2002, Bremen, Germany |
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Localisation de 10 genes sur la carte génétique de la pouleColloque annuel S.F.G. - Génomique Comparative, Apr 1999, Toulouse, France. 1 p., 1999 |
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Genetical and nutritional regulation of lipogenesis in chicken3ème Colloque Franco-Britannique de Nutrition, Sep 1998, Nancy, France |
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Lipid metabolism and breed-related susceptibility to hepatic steatosis in the gooseColloque Franco-Britannique de Nutrition, Sep 1998, Nancy, France. 1 p., 1998 |
L'aviculture, une filière d'avenirL'aviculture, une filière d'avenir, 2018 |
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Comportement rhéologique de suspensions d'amidon soumises à des cinétiques de température et de cisaillement élevées : synthèse bibliographique2000, pp.1 |
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Transgenerational transmission of an environmental modification in quails: changes in phenotypic variance components across three generations2025 |
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Molecular responses of chicken embryos to maternal heat stress through DNA methylation and gene expression2024 |
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Empowering bioinformatics communities with Nextflow and nf-core2024 |
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Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig2018 |
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Adapting the feed, the animal and the feeding techniques to improve the efficiency and sustainability of monogastric livestock production systemsDeliverable D5.2, INRAE; IRTA; Topigs Norwin; IFIP; Agrocampus ouest. 2019, 56 p |
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Genome-wide characterization of RNA editing in chicken: lack of evidence for non-A-to-I events[University works] auto-saisine. 2014 |